AT5G51450

E3 ubiquitin- protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
20892643 .. 20897959
5317 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51450.1

Sequence Viewer

Length: 1734 bp
ATGGGGATAACATATTTGCACATTTCCGTGGCAACAACAGCTTTGAGCTTTGTGGGTTTACAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATAATCACCAAGAACATTTCTTTAGGGAATTCTGAGAATACCCTTGAGCTTCTTCTGAGTTCTCACACTACAATTGCATTGCTGGCAAGTTTTGTTCTCAATATCTACATTCTTCTTGTTCTTTCTCTCAAGACTCTGTTTTTTGGAGATCTATATGCCATTGAAACTAGAAAACTGGTGGAAAGGCTTGCCAATTACATCATTTACAAGGGCACTTTTCTGCCATTCGTGGTTCCACGAACAGTATTTCAGGGGGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGCTTTGGCTAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCGACTCCTTGGACATACTTTCGTGTGTATTCAGCACTGTTCATGGTTCTCTCTACTGATTTGTGCTGGATAAAGCTTTCCCTTATGATATACAATACAGTTGGTTCGTCTGTCTATTTACTGTTACTTTTTGAGCCATGCGGTATAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGATATGTGGATCAACCACTTAGCAGTCAAGAATTCAGATTGCCAGAGATCAAAGTTTTATGATTCCATGACAGCAGGCTCGTTATTGGAATGGAAAGGCCTCCTCAACCGAAATCTTGGTTTCTTCCTAGACATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTGGTGGCTCCATGGAATGGCCTTCCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCCTTGCTAAGTTCAATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTTTAGGTGCTCTTCATGCAGCTCTTCTTGATGCAACTTCAGAAGAGCTACGGGATTATGATGACGAATGTGCTATATGTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCATCTTGGCTGCCTACGATCATGGTTGGATCAAGGTTTAAATGAGGTTTACTCTTGTCCTACTTGCCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCTAGCAGAGGAGAAGTCTCAAGCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAACAATTCTGTGCATGCACTAACCACTGGAATGTTTCCAACTGAGACGCCAAATTTCACCGAAAGTGATCCTTGGAGGAATTCAGAGGTGGATCCAAGCTGGCTGCAAACATGGTCAGATCAGGGTGTTGATGTTGTGGGTTCCTCTGCAGGCTCCAGATCCGTTGGGCTGGGGCAGGTTCAATTGATGATGAGGCATCTTGCATCTGTAGGGGAAGGTTCTGCTCAGACTACACTTGACGATGCTTCTTGGGGTCTCTGGCCAATGAATCCTTCGCAAGCATCGACTTCATCTACATATGTTCCTCCTGGTGCTGGAGGAAGAACAGGTGGTCTGCATCTAAGAACTGTCTCCCGTGCAGCAAATAACATGGCGAGTATACTAGCAATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAATAATTTTTCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCAGATGTGA

Protein Analysis

577

Amino Acids

64.52

Weight (kDa)

6.5

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_SYVN1_N PF25563 53 - 301 3.3e-20 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
zf-RING_2 PF13639 335 - 379 1.9e-08 Ring finger domain
zf-C3HC4 PF00097 337 - 378 9.3e-07 Zinc finger, C3HC4 type (RING finger)
CUE PF02845 541 - 577 3.1e-08 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 76
Acc36I ACCTGC 2 cut(s) 1399, 1689
AccB7I CCANNNNNTGG 2 cut(s) 841, 856
AccI GTMKAC 1 cut(s) 1612
AciI CCGC 1 cut(s) 597
AclWI GGATC 6 cut(s) 668, 1104, 1295, 1319, 1332, 1386
AcoI YGGCCR 2 cut(s) 1493, 1623
AcsI RAATTY 5 cut(s) 133, 682, 1285, 1312, 1693
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 1280
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 5 cut(s) 784, 841, 856, 1184, 1547
AflIII ACRYGT 1 cut(s) 1651
AgsI TTSAA 7 cut(s) 269, 410, 442, 644, 900, 907, 1415
AjnI CCWGG 1 cut(s) 1540
AjuI GAANNNNNNNTTGG 2 cut(s) 1489, 1521
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 8 cut(s) 84, 605, 1198, 1222, 1271, 1493, 1588, 1622
AlwI GGATC 6 cut(s) 668, 1104, 1295, 1319, 1332, 1386
AlwNI CAGNNNCTG 1 cut(s) 1681
AoxI GGCC 5 cut(s) 748, 801, 843, 1493, 1623
ApeKI GCWGC 4 cut(s) 959, 1077, 1336, 1592
ApoI RAATTY 5 cut(s) 133, 682, 1285, 1312, 1693
Asp700I GAANNNNTTC 1 cut(s) 1693
AspS9I GGNCC 3 cut(s) 361, 802, 1678
AsuHPI GGTGA 2 cut(s) 103, 1282
AvaII GGWCC 2 cut(s) 361, 1678
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 1495
BamHI GGATCC 1 cut(s) 1324
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 4 cut(s) 971, 1064, 1323, 1604
BccI CCATC 2 cut(s) 95, 858
BceAI ACGGC 1 cut(s) 1119
BciT130I CCWGG 1 cut(s) 1542
BciVI GTATCC 1 cut(s) 914
BcoDI GTCTC 8 cut(s) 84, 605, 1198, 1222, 1271, 1493, 1588, 1622
BfaI CTAG 5 cut(s) 273, 420, 779, 1179, 1616
BfmI CTRYAG 2 cut(s) 1380, 1440
BfuAI ACCTGC 2 cut(s) 1399, 1689
BfuI GTATCC 1 cut(s) 914
BglII AGATCT 1 cut(s) 253
BisI GCNGC 4 cut(s) 960, 1078, 1337, 1593
BlsI GCNGC 4 cut(s) 961, 1079, 1338, 1594
Bme1390I CCNGG 1 cut(s) 1542
Bme18I GGWCC 2 cut(s) 361, 1678
BmgT120I GGNCC 3 cut(s) 361, 802, 1678
BmiI GGNNCC 7 cut(s) 339, 362, 833, 1026, 1326, 1375, 1387
BmrFI CCNGG 1 cut(s) 1542
BmsI GCATC 8 cut(s) 455, 850, 961, 1438, 1445, 1465, 1523, 1579
BplI GAGNNNNNCTC 2 cut(s) 1103, 1135
BpmI CTGGAG 3 cut(s) 1372, 1569, 1709
Bpu10I CCTNAGC 1 cut(s) 1035
BpuEI CTTGAG 3 cut(s) 170, 218, 1180
Bsa29I ATCGAT 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 1280
BsaI GGTCTC 2 cut(s) 605, 1493
BsaJI CCNNGG 6 cut(s) 27, 464, 792, 805, 835, 1304
Bsc4I CCNNNNNNNGG 5 cut(s) 784, 841, 856, 1184, 1547
Bse1I ACTGG 2 cut(s) 285, 1264
Bse3DI GCAATG 2 cut(s) 182, 1626
BseBI CCWGG 1 cut(s) 1542
BseCI ATCGAT 1 cut(s) 436
BseDI CCNNGG 6 cut(s) 27, 464, 792, 805, 835, 1304
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 5 cut(s) 784, 841, 856, 1184, 1547
BseMI GCAATG 2 cut(s) 182, 1626
BseMII CTCAG 5 cut(s) 129, 152, 923, 1266, 1472
BseNI ACTGG 2 cut(s) 285, 1264
BseRI GAGGAG 2 cut(s) 743, 1200
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 4 cut(s) 971, 1064, 1323, 1604
BseYI CCCAGC 1 cut(s) 1402
BsgI GTGCAG 1 cut(s) 1611
BshFI GGCC 5 cut(s) 750, 803, 845, 1495, 1625
BshVI ATCGAT 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 952
BslI CCNNNNNNNGG 5 cut(s) 784, 841, 856, 1184, 1547
BsmAI GTCTC 8 cut(s) 84, 605, 1198, 1222, 1271, 1493, 1588, 1622
BsmBI CGTCTC 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 5 cut(s) 750, 803, 845, 1495, 1625
Bso31I GGTCTC 2 cut(s) 605, 1493
Bsp1286I GDGCHC 2 cut(s) 320, 952
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 1 cut(s) 597
BspANI GGCC 5 cut(s) 750, 803, 845, 1495, 1625
BspCNI CTCAG 5 cut(s) 130, 153, 924, 1267, 1471
BspDI ATCGAT 1 cut(s) 436
BspLI GGNNCC 7 cut(s) 339, 362, 833, 1026, 1326, 1375, 1387
BspMAI CTGCAG 1 cut(s) 1384
BspMI ACCTGC 2 cut(s) 1399, 1689
BspPI GGATC 6 cut(s) 668, 1104, 1295, 1319, 1332, 1386
BspQI GCTCTTC 3 cut(s) 957, 969, 978
BspTNI GGTCTC 2 cut(s) 605, 1493
BsrDI GCAATG 2 cut(s) 182, 1626
BsrI ACTGG 2 cut(s) 285, 1264
BssECI CCNNGG 6 cut(s) 27, 464, 792, 805, 835, 1304
BssNAI GTATAC 1 cut(s) 1613
BssNI GRCGYC 1 cut(s) 1280
BssT1I CCWWGG 4 cut(s) 464, 792, 835, 1304
Bst1107I GTATAC 1 cut(s) 1613
Bst2UI CCWGG 1 cut(s) 1542
Bst4CI ACNGT 8 cut(s) 349, 385, 495, 556, 579, 1582, 1633, 1711
Bst6I CTCTTC 3 cut(s) 957, 969, 978
BstACI GRCGYC 1 cut(s) 1280
BstBAI YACGTR 1 cut(s) 884
BstC8I GCNNGC 8 cut(s) 189, 294, 621, 727, 1248, 1334, 1384, 1512
BstDSI CCRYGG 2 cut(s) 27, 835
BstENI CCTNNNNNAGG 1 cut(s) 1182
BstF5I GGATG 1 cut(s) 865
BstMAI GTCTC 8 cut(s) 84, 605, 1198, 1222, 1271, 1493, 1588, 1622
BstMWI GCNNNNNNNGC 4 cut(s) 38, 188, 947, 956
BstNI CCWGG 1 cut(s) 1542
BstNSI RCATGY 2 cut(s) 1250, 1655
BstSCI CCNGG 1 cut(s) 1540
BstSFI CTRYAG 2 cut(s) 1380, 1440
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 971, 1064, 1323, 1604
BstX2I RGATCY 3 cut(s) 253, 1324, 1391
BstYI RGATCY 3 cut(s) 253, 1324, 1391
BstZ17I GTATAC 1 cut(s) 1613
Bsu15I ATCGAT 1 cut(s) 436
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 5 cut(s) 750, 803, 845, 1495, 1625
BsuTUI ATCGAT 1 cut(s) 436
BtgI CCRYGG 2 cut(s) 27, 835
BtgZI GCGATG 1 cut(s) 1215
BtsCI GGATG 1 cut(s) 865
BtsI GCAGTG 1 cut(s) 1051
BtsIMutI CAGTG 4 cut(s) 491, 1051, 1257, 1716
BveI ACCTGC 2 cut(s) 1399, 1689
Cac8I GCNNGC 8 cut(s) 189, 294, 621, 727, 1248, 1334, 1384, 1512
CaiI CAGNNNCTG 1 cut(s) 1681
Cfr13I GGNCC 3 cut(s) 361, 802, 1678
ClaI ATCGAT 1 cut(s) 436
CseI GACGC 1 cut(s) 1288
Csp6I GTAC 1 cut(s) 393
CviQI GTAC 1 cut(s) 393
DraI TTTAAA 1 cut(s) 1107
DrdI GACNNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 1493, 1623
Eam1104I CTCTTC 3 cut(s) 957, 969, 978
EarI CTCTTC 3 cut(s) 957, 969, 978
Eco130I CCWWGG 4 cut(s) 464, 792, 835, 1304
Eco147I AGGCCT 1 cut(s) 750
Eco31I GGTCTC 2 cut(s) 605, 1493
Eco47I GGWCC 2 cut(s) 361, 1678
Eco57I CTGAAG 1 cut(s) 963
EcoNI CCTNNNNNAGG 1 cut(s) 1182
EcoO109I RGGNCCY 2 cut(s) 361, 1678
EcoRI GAATTC 3 cut(s) 133, 682, 1312
EcoRII CCWGG 1 cut(s) 1540
EcoT14I CCWWGG 4 cut(s) 464, 792, 835, 1304
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 4 cut(s) 464, 792, 835, 1304
Esp3I CGTCTC 1 cut(s) 1271
FalI AAGNNNNNCTT 2 cut(s) 1288, 1320
FauNDI CATATG 1 cut(s) 1531
FblI GTMKAC 1 cut(s) 1612
Fnu4HI GCNGC 4 cut(s) 960, 1078, 1337, 1593
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 4 cut(s) 960, 1078, 1337, 1593
FspBI CTAG 5 cut(s) 273, 420, 779, 1179, 1616
GluI GCNGC 4 cut(s) 960, 1078, 1337, 1593
GsaI CCCAGC 1 cut(s) 1406
GsuI CTGGAG 3 cut(s) 1372, 1569, 1709
HaeIII GGCC 5 cut(s) 750, 803, 845, 1495, 1625
HgaI GACGC 1 cut(s) 1288
Hin1I GRCGYC 1 cut(s) 1280
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HindIII AAGCTT 2 cut(s) 411, 530
HinfI GANTC 6 cut(s) 238, 460, 631, 713, 1174, 1501
HphI GGTGA 2 cut(s) 103, 1282
Hpy166II GTNNAC 6 cut(s) 59, 381, 393, 1117, 1613, 1714
Hpy188I TCNGA 7 cut(s) 139, 162, 688, 982, 1318, 1351, 1461
Hpy188III TCNNGA 9 cut(s) 67, 83, 235, 679, 968, 1022, 1389, 1676, 1726
Hpy8I GTNNAC 6 cut(s) 59, 381, 393, 1117, 1613, 1714
HpyAV CCTTC 4 cut(s) 462, 856, 1442, 1515
HpyCH4III ACNGT 8 cut(s) 349, 385, 495, 556, 579, 1582, 1633, 1711
HpyCH4IV ACGT 1 cut(s) 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 188, 947, 956
HpySE526I ACGT 1 cut(s) 883
Hsp92I GRCGYC 1 cut(s) 1280
LguI GCTCTTC 3 cut(s) 957, 969, 978
LmnI GCTCC 2 cut(s) 837, 1391
Lsp1109I GCAGC 4 cut(s) 971, 1064, 1323, 1604
LweI GCATC 8 cut(s) 455, 850, 961, 1438, 1445, 1465, 1523, 1579
MaeI CTAG 5 cut(s) 273, 420, 779, 1179, 1616
MaeII ACGT 1 cut(s) 883
MaeIII GTNAC 2 cut(s) 579, 1705
MboII GAAGA 9 cut(s) 149, 209, 447, 766, 944, 956, 995, 1566, 1712
MfeI CAATTG 2 cut(s) 177, 1415
MflI RGATCY 3 cut(s) 253, 1324, 1391
MhlI GDGCHC 2 cut(s) 320, 952
MlsI TGGCCA 1 cut(s) 1495
MluNI TGGCCA 1 cut(s) 1495
MlyI GAGTC 2 cut(s) 232, 454
MmeI TCCRAC 2 cut(s) 1074, 1295
Mox20I TGGCCA 1 cut(s) 1495
Mph1103I ATGCAT 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 1693
MscI TGGCCA 1 cut(s) 1495
MseI TTAA 1 cut(s) 1106
MslI CAYNNNNRTG 2 cut(s) 26, 1262
Msp20I TGGCCA 1 cut(s) 1495
MspR9I CCNGG 1 cut(s) 1542
MunI CAATTG 2 cut(s) 177, 1415
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 1542
MwoI GCNNNNNNNGC 4 cut(s) 38, 188, 947, 956
NcoI CCATGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 1531
NlaIV GGNNCC 7 cut(s) 339, 362, 833, 1026, 1326, 1375, 1387
NmeAIII GCCGAG 1 cut(s) 1651
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 2 cut(s) 1250, 1655
PaeI GCATGC 1 cut(s) 1250
PceI AGGCCT 1 cut(s) 750
PciI ACATGT 1 cut(s) 1651
PciSI GCTCTTC 3 cut(s) 957, 969, 978
PcsI WCGNNNNNNNCGW 2 cut(s) 433, 1514
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 1693
PfeI GAWTC 4 cut(s) 631, 713, 1174, 1501
PflMI CCANNNNNTGG 2 cut(s) 841, 856
PkrI GCNGC 4 cut(s) 961, 1079, 1338, 1594
PleI GAGTC 2 cut(s) 232, 454
PpsI GAGTC 2 cut(s) 232, 454
Ppu21I YACGTR 1 cut(s) 884
PpuMI RGGWCCY 2 cut(s) 361, 1678
PscI ACATGT 1 cut(s) 1651
Psp5II RGGWCCY 2 cut(s) 361, 1678
Psp6I CCWGG 1 cut(s) 1540
PspFI CCCAGC 1 cut(s) 1402
PspGI CCWGG 1 cut(s) 1540
PspN4I GGNNCC 7 cut(s) 339, 362, 833, 1026, 1326, 1375, 1387
PspPI GGNCC 3 cut(s) 361, 802, 1678
PspPPI RGGWCCY 2 cut(s) 361, 1678
PstI CTGCAG 1 cut(s) 1384
PstNI CAGNNNCTG 1 cut(s) 1681
PsuI RGATCY 3 cut(s) 253, 1324, 1391
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 2 cut(s) 26, 1262
SapI GCTCTTC 3 cut(s) 957, 969, 978
SaqAI TTAA 1 cut(s) 1106
SatI GCNGC 4 cut(s) 960, 1078, 1337, 1593
Sau96I GGNCC 3 cut(s) 361, 802, 1678
SchI GAGTC 2 cut(s) 232, 454
ScrFI CCNGG 1 cut(s) 1542
SduI GDGCHC 2 cut(s) 320, 952
SfaNI GCATC 8 cut(s) 455, 850, 961, 1438, 1445, 1465, 1523, 1579
SfcI CTRYAG 2 cut(s) 1380, 1440
SinI GGWCC 2 cut(s) 361, 1678
SmiMI CAYNNNNRTG 2 cut(s) 26, 1262
SmlI CTYRAG 3 cut(s) 149, 233, 1195
SmoI CTYRAG 3 cut(s) 149, 233, 1195
SphI GCATGC 1 cut(s) 1250
SseBI AGGCCT 1 cut(s) 750
SsiI CCGC 1 cut(s) 597
SspMI CTAG 5 cut(s) 273, 420, 779, 1179, 1616
StuI AGGCCT 1 cut(s) 750
StyD4I CCNGG 1 cut(s) 1540
StyI CCWWGG 4 cut(s) 464, 792, 835, 1304
TaaI ACNGT 8 cut(s) 349, 385, 495, 556, 579, 1582, 1633, 1711
TaiI ACGT 1 cut(s) 886
TaqI TCGA 3 cut(s) 436, 458, 1517
TaqII GACCGA 1 cut(s) 797
TatI WGTACW 1 cut(s) 392
TfiI GAWTC 4 cut(s) 631, 713, 1174, 1501
Tru1I TTAA 1 cut(s) 1106
Tru9I TTAA 1 cut(s) 1106
TscAI CASTG 4 cut(s) 498, 1058, 1264, 1716
TseI GCWGC 4 cut(s) 959, 1077, 1336, 1592
TspDTI ATGAA 7 cut(s) 487, 944, 1058, 1218, 1512, 1514, 1677
TspGWI ACGGA 3 cut(s) 16, 86, 1384
TspRI CASTG 4 cut(s) 498, 1058, 1264, 1716
Van91I CCANNNNNTGG 2 cut(s) 841, 856
VpaK11BI GGWCC 2 cut(s) 361, 1678
XagI CCTNNNNNAGG 1 cut(s) 1182
XapI RAATTY 5 cut(s) 133, 682, 1285, 1312, 1693
XceI RCATGY 2 cut(s) 1250, 1655
XmiI GTMKAC 1 cut(s) 1612
XmnI GAANNNNTTC 1 cut(s) 1693
XspI CTAG 5 cut(s) 273, 420, 779, 1179, 1616
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.