Rh1AG393900

E3 ubiquitin protein ligase RIN2-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
62232824 .. 62238192
5369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG393900.1

Sequence Viewer

Length: 1368 bp
ATGTTTCAAGCTTTGGCTAGAGATCGACTTGAACGATTGAATGCGTCTCCTTCAGCTACACCATTGACATATTTTCGTGTGTATTCAGTGTTGTTGTTTGTGTTCACTGTGGATATTTTCTGGATAAGGCTTTGTGTGGTGATATACAGAACACTGGGTTTATCTATGTTTCTCCTGTTATTATTTGAGCCTTTCAGTATTGGATTTGAGACACTGCAGGCTATTTTGGTCCATGGATTTCAGTTACTTGATATATGGCTCCATCATTCAGCATGGAGCGATGCAAATTGTGAAAGATCGAAATTATTTGATACATCAGCAGCTGGTTTGTTGTTGGAATGGAAAGGCAGTCTTACTCGGAATCTGGGTTTTGTCCTAGACATGGCAACATTGTTAATGGCACTTGGTCACTACGTGCATATTTGGTGGCTCCACGGCATGGCATTTCATTTTGTGGATGCGATCCTTTTTCTAAACATACGTGTAAATATTTGTGCCTTGTTAAGTGCTATTATAAAACGTATAAGAGGGTTCATGAAACTGAGAAAAGCCTTGGGTGCTCTCCATGCAGCCCTTCCAGATGCAACATCTGACGAACTACGAGCTTATGATGATGAATGTGCGATCTGCAGGGAACCTATGGCCAAGGCTAAAAAATTACACTGCAGTCACCTATTTCATCTTCCATGCTTGAGATCTTGGTTGGATCAAGGTTTAAATGAGGTATATTCTTGTCCAACTTGTCGCAAGCCACTGTTTGTAGGCAGACCAGAAAATGAAGCACATCCCCGCCATGAAGAAACTTCGAGTGATGAGCAGCTGGCTCGTCAAATAAGTTCAGGACTTGATAGACAAAATAGTTCTGGACATACACTCCCTACAGGTGTTTTCCCCAATCAGACTCAGAGCCCTACAGAAGGTCCTTGGAGGACTGCAGGACTGGATCCAAATTGGTTGAACACCTGGCCAAGCCACGGAGTTGATGGGGCAGGTCCTTCTACTGCTATCGGATCTGTTGGACTGGGGAGAGTACAGATGATGATGAGGCATCTTGCCTCTGTTGGAGAAACCTATGCCCAGACAGCCCTTGAAGATGGTGCGTGGAGCCTCTGGCCTATGAATCCGTCTCAAGCTGCCGCAACTGGTCAGCCCATTCCTCCTGCTGACGATGGAAGATACCCAGTAGGAACACGCAATTTACATATGAGGTCCCCCTCACGCACTGTGAATGACAACATAGCAAACATACTTGCTATGGCCGAGACAGTACGGGAAGTTTTGCCTCATATGCCCGATGACATAATATTCCAGGATTTGCAGCGGACAAATTCTGTTACAGTTACTGTGAATAATCTTCTCCAAATGTGA

Protein Analysis

455

Amino Acids

50.91

Weight (kDa)

6.52

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_SYVN1_N PF25563 2 - 156 2.7e-09 E3 ubiquitin-protein ligase synoviolin-like, TPR repeats
zf-RING_2 PF13639 205 - 249 2.3e-08 Ring finger domain
zf-C3HC4 PF00097 207 - 248 8.2e-07 Zinc finger, C3HC4 type (RING finger)
CUE PF02845 419 - 455 7.4e-07 CUE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 980
AccB7I CCANNNNNTGG 1 cut(s) 439
AciI CCGC 3 cut(s) 790, 1137, 1321
AclWI GGATC 5 cut(s) 457, 714, 938, 951, 1018
AcoI YGGCCR 3 cut(s) 642, 965, 1257
AcsI RAATTY 1 cut(s) 1327
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 415
AfaI GTAC 2 cut(s) 1032, 1269
AfiI CCNNNNNNNGG 4 cut(s) 382, 439, 917, 974
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 5 cut(s) 8, 32, 40, 958, 1091
AjnI CCWGG 2 cut(s) 962, 1308
AluBI AGCT 6 cut(s) 11, 56, 323, 605, 820, 1133
AluI AGCT 6 cut(s) 11, 56, 323, 605, 820, 1133
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 4 cut(s) 51, 203, 1131, 1256
AlwI GGATC 5 cut(s) 457, 714, 938, 951, 1018
AlwNI CAGNNNCTG 2 cut(s) 323, 1343
AoxI GGCC 4 cut(s) 642, 965, 1112, 1257
ApeKI GCWGC 5 cut(s) 320, 569, 817, 1133, 1318
ApoI RAATTY 1 cut(s) 1327
AspS9I GGNCC 4 cut(s) 229, 920, 992, 1209
AsuHPI GGTGA 2 cut(s) 151, 662
AvaII GGWCC 4 cut(s) 229, 920, 992, 1209
BalI TGGCCA 2 cut(s) 644, 967
BamHI GGATCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 911
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 5 cut(s) 332, 581, 829, 1120, 1330
BccI CCATC 4 cut(s) 270, 977, 1088, 1163
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 2 cut(s) 964, 1310
BcoDI GTCTC 4 cut(s) 51, 203, 1131, 1256
BfaI CTAG 2 cut(s) 18, 377
BfmI CTRYAG 6 cut(s) 215, 628, 664, 879, 912, 933
BfuAI ACCTGC 1 cut(s) 980
BglII AGATCT 1 cut(s) 695
BisI GCNGC 6 cut(s) 321, 570, 818, 1134, 1137, 1319
BlsI GCNGC 6 cut(s) 322, 571, 819, 1135, 1138, 1320
Bme1390I CCNGG 2 cut(s) 964, 1310
Bme18I GGWCC 4 cut(s) 229, 920, 992, 1209
BmgT120I GGNCC 4 cut(s) 229, 920, 992, 1209
BmiI GGNNCC 6 cut(s) 260, 431, 636, 945, 1106, 1211
BmrFI CCNGG 2 cut(s) 964, 1310
BmrI ACTGGG 3 cut(s) 164, 1031, 1175
BmsI GCATC 4 cut(s) 271, 448, 571, 1057
BmuI ACTGGG 3 cut(s) 164, 1031, 1175
BpuEI CTTGAG 2 cut(s) 712, 1113
BsaAI YACGTR 2 cut(s) 415, 482
BsaJI CCNNGG 6 cut(s) 232, 433, 552, 645, 923, 973
BsaXI ACNNNNNCTCC 2 cut(s) 858, 888
Bsc4I CCNNNNNNNGG 4 cut(s) 382, 439, 917, 974
Bse1I ACTGG 5 cut(s) 159, 945, 1026, 1147, 1181
BseBI CCWGG 2 cut(s) 964, 1310
BseDI CCNNGG 6 cut(s) 232, 433, 552, 645, 923, 973
BseGI GGATG 2 cut(s) 463, 784
BseLI CCNNNNNNNGG 4 cut(s) 382, 439, 917, 974
BseMII CTCAG 2 cut(s) 533, 917
BseNI ACTGG 5 cut(s) 159, 945, 1026, 1147, 1181
BseXI GCAGC 5 cut(s) 332, 581, 829, 1120, 1330
BshFI GGCC 4 cut(s) 644, 967, 1114, 1259
BsiHKAI GWGCWC 1 cut(s) 562
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 4 cut(s) 382, 439, 917, 974
BsmAI GTCTC 4 cut(s) 51, 203, 1131, 1256
BsmBI CGTCTC 2 cut(s) 51, 1131
BsmFI GGGAC 1 cut(s) 1195
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 4 cut(s) 644, 967, 1114, 1259
Bsp1286I GDGCHC 2 cut(s) 562, 911
Bsp143I GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 3 cut(s) 790, 1137, 1321
BspANI GGCC 4 cut(s) 644, 967, 1114, 1259
BspCNI CTCAG 2 cut(s) 534, 916
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 6 cut(s) 260, 431, 636, 945, 1106, 1211
BspMAI CTGCAG 4 cut(s) 219, 632, 668, 937
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 5 cut(s) 457, 714, 938, 951, 1018
BsrI ACTGG 5 cut(s) 159, 945, 1026, 1147, 1181
BssECI CCNNGG 6 cut(s) 232, 433, 552, 645, 923, 973
BssMI GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
BssT1I CCWWGG 4 cut(s) 232, 552, 645, 923
Bst2UI CCWGG 2 cut(s) 964, 1310
Bst4CI ACNGT 6 cut(s) 109, 756, 1225, 1267, 1339, 1345
BstBAI YACGTR 2 cut(s) 415, 482
BstC8I GCNNGC 3 cut(s) 219, 749, 822
BstDEI CTNAG 2 cut(s) 542, 903
BstDSI CCRYGG 3 cut(s) 232, 433, 973
BstENI CCTNNNNNAGG 1 cut(s) 915
BstF5I GGATG 2 cut(s) 463, 784
BstKTI GATC 8 cut(s) 25, 299, 465, 627, 698, 709, 946, 1013
BstMAI GTCTC 4 cut(s) 51, 203, 1131, 1256
BstMBI GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
BstMWI GCNNNNNNNGC 4 cut(s) 557, 566, 1082, 1288
BstNI CCWGG 2 cut(s) 964, 1310
BstSCI CCNGG 2 cut(s) 962, 1308
BstSFI CTRYAG 6 cut(s) 215, 628, 664, 879, 912, 933
BstV1I GCAGC 5 cut(s) 332, 581, 829, 1120, 1330
BstX2I RGATCY 3 cut(s) 695, 943, 1010
BstYI RGATCY 3 cut(s) 695, 943, 1010
BsuRI GGCC 4 cut(s) 644, 967, 1114, 1259
BtgI CCRYGG 3 cut(s) 232, 433, 973
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 463, 784
BtsI GCAGTG 2 cut(s) 212, 661
BtsIMutI CAGTG 7 cut(s) 93, 105, 152, 212, 661, 752, 1221
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 3 cut(s) 219, 749, 822
CaiI CAGNNNCTG 2 cut(s) 323, 1343
CciI TCATGA 1 cut(s) 534
Cfr13I GGNCC 4 cut(s) 229, 920, 992, 1209
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 1031, 1268
CviAII CATG 8 cut(s) 233, 273, 382, 439, 535, 566, 687, 794
CviQI GTAC 2 cut(s) 1031, 1268
DdeI CTNAG 2 cut(s) 542, 903
DpnI GATC 8 cut(s) 24, 298, 464, 626, 697, 708, 945, 1012
DpnII GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
DraI TTTAAA 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 415
EaeI YGGCCR 3 cut(s) 642, 965, 1257
Eco130I CCWWGG 4 cut(s) 232, 552, 645, 923
Eco24I GRGCYC 1 cut(s) 911
Eco47I GGWCC 4 cut(s) 229, 920, 992, 1209
Eco57I CTGAAG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 915
EcoO109I RGGNCCY 3 cut(s) 920, 992, 1209
EcoRII CCWGG 2 cut(s) 962, 1308
EcoT14I CCWWGG 4 cut(s) 232, 552, 645, 923
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 4 cut(s) 232, 552, 645, 923
Esp3I CGTCTC 2 cut(s) 51, 1131
FaeI CATG 8 cut(s) 236, 276, 385, 442, 538, 569, 690, 797
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 1195
FatI CATG 8 cut(s) 232, 272, 381, 438, 534, 565, 686, 793
FauI CCCGC 1 cut(s) 797
FauNDI CATATG 2 cut(s) 1203, 1287
Fnu4HI GCNGC 6 cut(s) 321, 570, 818, 1134, 1137, 1319
FokI GGATG 2 cut(s) 470, 771
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 6 cut(s) 321, 570, 818, 1134, 1137, 1319
FspBI CTAG 2 cut(s) 18, 377
GluI GCNGC 6 cut(s) 321, 570, 818, 1134, 1137, 1319
HaeIII GGCC 4 cut(s) 644, 967, 1114, 1259
HgaI GACGC 1 cut(s) 33
Hin1II CATG 8 cut(s) 236, 276, 385, 442, 538, 569, 690, 797
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 3 cut(s) 361, 901, 1120
HphI GGTGA 2 cut(s) 151, 662
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 5 cut(s) 360, 592, 900, 906, 1010
Hpy188III TCNNGA 5 cut(s) 121, 535, 578, 840, 864
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 4 cut(s) 60, 584, 911, 1005
HpyCH4III ACNGT 6 cut(s) 109, 756, 1225, 1267, 1339, 1345
HpyCH4IV ACGT 3 cut(s) 414, 481, 520
HpyCH4V TGCA 9 cut(s) 217, 284, 418, 569, 584, 630, 666, 935, 1318
HpyF10VI GCNNNNNNNGC 4 cut(s) 557, 566, 1082, 1288
HpyF3I CTNAG 2 cut(s) 542, 903
HpySE526I ACGT 3 cut(s) 414, 481, 520
Hsp92II CATG 8 cut(s) 236, 276, 385, 442, 538, 569, 690, 797
Kzo9I GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
LmnI GCTCC 4 cut(s) 264, 276, 435, 1104
Lsp1109I GCAGC 5 cut(s) 332, 581, 829, 1120, 1330
LweI GCATC 4 cut(s) 271, 448, 571, 1057
MaeI CTAG 2 cut(s) 18, 377
MaeII ACGT 3 cut(s) 414, 481, 520
MaeIII GTNAC 5 cut(s) 243, 407, 668, 1333, 1339
MalI GATC 8 cut(s) 24, 298, 464, 626, 697, 708, 945, 1012
MboI GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
MboII GAAGA 5 cut(s) 674, 809, 1103, 1185, 1346
MflI RGATCY 3 cut(s) 695, 943, 1010
MhlI GDGCHC 2 cut(s) 562, 911
MlsI TGGCCA 2 cut(s) 644, 967
MluCI AATT 6 cut(s) 286, 302, 656, 949, 1195, 1327
MluNI TGGCCA 2 cut(s) 644, 967
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 5 cut(s) 315, 684, 761, 997, 1042
Mox20I TGGCCA 2 cut(s) 644, 967
MscI TGGCCA 2 cut(s) 644, 967
MseI TTAA 3 cut(s) 395, 503, 716
Msp20I TGGCCA 2 cut(s) 644, 967
MspA1I CMGCKG 3 cut(s) 323, 820, 1321
MspR9I CCNGG 2 cut(s) 964, 1310
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 2 cut(s) 964, 1310
MwoI GCNNNNNNNGC 4 cut(s) 557, 566, 1082, 1288
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 2 cut(s) 1203, 1287
NdeII GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
NlaIII CATG 8 cut(s) 236, 276, 385, 442, 538, 569, 690, 797
NlaIV GGNNCC 6 cut(s) 260, 431, 636, 945, 1106, 1211
NmeAIII GCCGAG 1 cut(s) 1285
NmuCI GTSAC 2 cut(s) 407, 668
PagI TCATGA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 2 cut(s) 361, 1120
PflMI CCANNNNNTGG 1 cut(s) 439
PfoI TCCNGGA 1 cut(s) 1308
PkrI GCNGC 6 cut(s) 322, 571, 819, 1135, 1138, 1320
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
Ppu21I YACGTR 2 cut(s) 415, 482
PpuMI RGGWCCY 3 cut(s) 920, 992, 1209
PsiI TTATAA 1 cut(s) 515
Psp5II RGGWCCY 3 cut(s) 920, 992, 1209
Psp6I CCWGG 2 cut(s) 962, 1308
PspGI CCWGG 2 cut(s) 962, 1308
PspN4I GGNNCC 6 cut(s) 260, 431, 636, 945, 1106, 1211
PspPI GGNCC 4 cut(s) 229, 920, 992, 1209
PspPPI RGGWCCY 3 cut(s) 920, 992, 1209
PstI CTGCAG 4 cut(s) 219, 632, 668, 937
PstNI CAGNNNCTG 2 cut(s) 323, 1343
PsuI RGATCY 3 cut(s) 695, 943, 1010
PvuII CAGCTG 2 cut(s) 323, 820
RsaI GTAC 2 cut(s) 1032, 1269
RsaNI GTAC 2 cut(s) 1031, 1268
SaqAI TTAA 3 cut(s) 395, 503, 716
SatI GCNGC 6 cut(s) 321, 570, 818, 1134, 1137, 1319
Sau3AI GATC 8 cut(s) 22, 296, 462, 624, 695, 706, 943, 1010
Sau96I GGNCC 4 cut(s) 229, 920, 992, 1209
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 2 cut(s) 964, 1310
SduI GDGCHC 2 cut(s) 562, 911
SfaNI GCATC 4 cut(s) 271, 448, 571, 1057
SfcI CTRYAG 6 cut(s) 215, 628, 664, 879, 912, 933
SinI GGWCC 4 cut(s) 229, 920, 992, 1209
SmlI CTYRAG 2 cut(s) 691, 1128
SmoI CTYRAG 2 cut(s) 691, 1128
Sse9I AATT 6 cut(s) 286, 302, 656, 949, 1195, 1327
SsiI CCGC 3 cut(s) 790, 1137, 1321
SspI AATATT 2 cut(s) 490, 1305
SspMI CTAG 2 cut(s) 18, 377
StyD4I CCNGG 2 cut(s) 962, 1308
StyI CCWWGG 4 cut(s) 232, 552, 645, 923
TaaI ACNGT 6 cut(s) 109, 756, 1225, 1267, 1339, 1345
TaiI ACGT 3 cut(s) 417, 484, 523
TaqI TCGA 3 cut(s) 25, 299, 806
TasI AATT 6 cut(s) 286, 302, 656, 949, 1195, 1327
TatI WGTACW 1 cut(s) 1030
TauI GCSGC 1 cut(s) 1139
TfiI GAWTC 2 cut(s) 361, 1120
Tru1I TTAA 3 cut(s) 395, 503, 716
Tru9I TTAA 3 cut(s) 395, 503, 716
TscAI CASTG 7 cut(s) 93, 112, 159, 219, 668, 759, 1228
TseFI GTSAC 2 cut(s) 407, 668
TseI GCWGC 5 cut(s) 320, 569, 817, 1133, 1318
Tsp45I GTSAC 2 cut(s) 407, 668
TspDTI ATGAA 8 cut(s) 437, 523, 551, 630, 668, 792, 810, 1133
TspGWI ACGGA 2 cut(s) 990, 1113
TspRI CASTG 7 cut(s) 93, 112, 159, 219, 668, 759, 1228
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 4 cut(s) 229, 920, 992, 1209
XagI CCTNNNNNAGG 1 cut(s) 915
XapI RAATTY 1 cut(s) 1327
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
XspI CTAG 2 cut(s) 18, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.