Prupe.2G277400_v2.0.a1

E3 ubiquitin protein ligase RIN2-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
27836154 .. 27841643
5490 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G277400.1

Sequence Viewer

Length: 1764 bp
ATGGGTTTGCGGTATATAGCCATCTCTGCAGTATGTACGGCGATAAGCTTTGCGGGTCTCCAATTGTGGACAGAAACTTCTTTAGTTAAACTAAAATCAGATGGACTAATTGGAGATAATTTGATTCCTGCGGCCAATTTTGGACATGTAGTTGATCTGCTTTTGGGTTCTTACGCCACTGTTGGACTGCTGGCAAATTTTGTACTCAATGCATTTGTTTTACTCGTTCTATTTCTCAAGACTATATTCTTTGTGGAGTTGTATCCTTCTGAAACTCGCAAATTGGTCGAACGCCTTATCAATTATGTTATTTACAAGGGCACGTTTCTACCACTGGTTATTCCTCCTACGATATATCATGCAGGCCTGTGGTCAGTCTGGTTGATTGTTCTTTGTTCTCTAAAGATGTTTCAAGCTTTGGCTAGAGATCGACTTGAACGATTGAATGCATCTCCTTCTGCCACACCATTGTCATATTTTCGTGTGTATTCAGTGTTATTGTTGGTTCTCACTGTTGATGTTTTCTGGATAAGGCTGTGTGTGGTGATATATAAAACTCTGGGTTTATCCATGTTTCTCTTGTTATTATTTGAGCCTTTCAGTATTGCATTTGAAACACTGCAGGCTATTTTGGTGCATGGATTTCAGTTACTTGATATATGGATTCATCATTCAGCATGGAACAGTGAAAATTGCGAGAGGTCCAAATTATTTGATACGTCAGCTGCTGGTTTATTGTTGGAATGGAAAGGCAGTCTTACTCGGAATTTGGGCTTTGTCCTAGACATGGCAACATTGTTAATGGCACTTGGTCACTATGTGCATATTTGGTGGCTTCATGGCATGGCATTCCATCTAGTGGATGCAATCCTTTTTCTAAACATACGTGCCTTGCTAAGTGCAATTGTAAAACGTATAAAAGGGTTCGTCAAACTAAGAAAAGCCTTAGGCGCTCTTCATGCAGCACTTCCAGATGCAACGTCTGAAGAACTACGAACATATGATGATGAATGTGCAATTTGTAGGGAACCTATGGCTAAGGCTAAAAAACTACACTGTAGTCACCTTTTTCATCTTGCGTGCTTGAGATCTTGGTTGGACCAAGGTTTGAATGAGATATATTCATGTCCAACTTGTCGCAAGCCACTTTTTGTAGGCAGAACTGAAAATGAAGTACATCCCCGCAATGAAGAAACTTCAAGTGATGAGCAGCTTGCTCGTCAAATAAGTTCAGGACTTGATCGACAAAATAGTTCTGGACATACAATACCTACTGGCGCATTCCCCAATCAGGCTCAGAATCTTACAGAAGGTGGTCCATGGAGGGGTGCAGGACTGGATTCAAATTGGTTGCATAATTGGCCAAGTGAGGGAGTTGATGGGGCAGGTCCTTCTACTGCTATCGGATCTGTTGGACTGGGGAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTCGGAGAAACTTATGCCCAGACGGCCCTTGAAGATGGTGCTTGGAGCCTATGGCCTATGAGTCCCTCTCAGGTTGCTGCAACTGGTCCATCTAATCCTCCTGCTGATGATGGAAGATACCATGGAGGAGCACGGAGCTTGCATATTAGAACTCCCACACGTACTGTGAATGACAACCTAGCAAACATACTTGCTATGGCTGAGACAGTGAGGGAAGTTCTGCCTCATATGCCGGATGACCTAATTTTCCAGGATTTGCAGAGAACAAATTCTGTTACGGTTACTGTGAATAATCTTCTCCAAATGTGA

Protein Analysis

588

Amino Acids

65.2

Weight (kDa)

6.7

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1376
AccB7I CCANNNNNTGG 1 cut(s) 859
AciI CCGC 4 cut(s) 10, 53, 131, 1183
AclWI GGATC 1 cut(s) 1414
AcoI YGGCCR 2 cut(s) 132, 1361
AcsI RAATTY 3 cut(s) 196, 766, 1723
AcuI CTGAAG 1 cut(s) 1005
AdeI CACNNNGTG 1 cut(s) 820
AfaI GTAC 4 cut(s) 37, 204, 1176, 1618
AfiI CCNNNNNNNGG 5 cut(s) 787, 859, 1291, 1325, 1370
AflIII ACRYGT 2 cut(s) 145, 1613
AgsI TTSAA 9 cut(s) 413, 437, 445, 614, 1111, 1200, 1344, 1430, 1487
AjnI CCWGG 1 cut(s) 1704
AluBI AGCT 5 cut(s) 48, 416, 725, 1213, 1593
AluI AGCT 5 cut(s) 48, 416, 725, 1213, 1593
Alw21I GWGCWC 1 cut(s) 1588
Alw26I GTCTC 2 cut(s) 62, 1652
AlwI GGATC 1 cut(s) 1414
AlwNI CAGNNNCTG 1 cut(s) 728
AoxI GGCC 5 cut(s) 132, 364, 1361, 1479, 1508
ApeKI GCWGC 4 cut(s) 725, 962, 1210, 1532
ApoI RAATTY 3 cut(s) 196, 766, 1723
Asp700I GAANNNNTTC 1 cut(s) 1723
AspLEI GCGC 2 cut(s) 953, 1280
AspS9I GGNCC 6 cut(s) 702, 1099, 1316, 1388, 1480, 1541
AsuHPI GGTGA 2 cut(s) 556, 1055
AvaII GGWCC 5 cut(s) 702, 1099, 1316, 1388, 1541
AxyI CCTNAGG 1 cut(s) 946
BaeGI GKGCMC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 1363
Bbv12I GWGCWC 1 cut(s) 1588
BbvI GCAGC 4 cut(s) 712, 974, 1222, 1519
BccI CCATC 7 cut(s) 29, 95, 861, 1373, 1484, 1552, 1559
BceAI ACGGC 2 cut(s) 54, 1494
BcgI CGANNNNNNTGC 4 cut(s) 268, 302, 1199, 1233
BciT130I CCWGG 1 cut(s) 1706
BciVI GTATCC 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 62, 1652
BfaI CTAG 4 cut(s) 423, 782, 857, 1634
BfmI CTRYAG 3 cut(s) 27, 620, 1057
BfoI RGCGCY 1 cut(s) 954
BfuAI ACCTGC 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 1478
BglII AGATCT 1 cut(s) 1088
BisI GCNGC 5 cut(s) 132, 726, 963, 1211, 1533
BlsI GCNGC 5 cut(s) 133, 727, 964, 1212, 1534
Bme1390I CCNGG 1 cut(s) 1706
Bme18I GGWCC 5 cut(s) 702, 1099, 1316, 1388, 1541
BmgT120I GGNCC 6 cut(s) 702, 1099, 1316, 1388, 1480, 1541
BmiI GGNNCC 2 cut(s) 1029, 1502
BmrFI CCNGG 1 cut(s) 1706
BmrI ACTGGG 1 cut(s) 1427
BmsI GCATC 5 cut(s) 458, 853, 964, 1453, 1460
BmuI ACTGGG 1 cut(s) 1427
BplI GAGNNNNNCTC 2 cut(s) 1507, 1539
Bpu10I CCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 221, 1105
BsaAI YACGTR 2 cut(s) 887, 1616
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 1102, 1319, 1576
Bsc4I CCNNNNNNNGG 5 cut(s) 787, 859, 1291, 1325, 1370
Bse1I ACTGG 5 cut(s) 339, 1279, 1341, 1422, 1543
Bse21I CCTNAGG 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 1192
BseBI CCWGG 1 cut(s) 1706
BseDI CCNNGG 3 cut(s) 1102, 1319, 1576
BseGI GGATG 3 cut(s) 868, 1177, 1696
BseLI CCNNNNNNNGG 5 cut(s) 787, 859, 1291, 1325, 1370
BseMI GCAATG 1 cut(s) 1192
BseMII CTCAG 3 cut(s) 1310, 1538, 1647
BseNI ACTGG 5 cut(s) 339, 1279, 1341, 1422, 1543
BseRI GAGGAG 1 cut(s) 1596
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 4 cut(s) 712, 974, 1222, 1519
BsgI GTGCAG 1 cut(s) 1350
BshFI GGCC 5 cut(s) 134, 366, 1363, 1481, 1510
BsiHKAI GWGCWC 1 cut(s) 1588
BsiSI CCGG 1 cut(s) 1688
BslFI GGGAC 1 cut(s) 1503
BslI CCNNNNNNNGG 5 cut(s) 787, 859, 1291, 1325, 1370
BsmAI GTCTC 2 cut(s) 62, 1652
BsmFI GGGAC 1 cut(s) 1503
BsmI GAATGC 3 cut(s) 451, 848, 1280
BsnI GGCC 5 cut(s) 134, 366, 1363, 1481, 1510
Bso31I GGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 323, 1588
Bsp143I GATC 5 cut(s) 154, 427, 1088, 1240, 1406
Bsp19I CCATGG 2 cut(s) 1319, 1576
BspACI CCGC 4 cut(s) 10, 53, 131, 1183
BspANI GGCC 5 cut(s) 134, 366, 1363, 1481, 1510
BspCNI CTCAG 3 cut(s) 1309, 1537, 1648
BspLI GGNNCC 2 cut(s) 1029, 1502
BspMAI CTGCAG 2 cut(s) 31, 624
BspMI ACCTGC 1 cut(s) 1376
BspPI GGATC 1 cut(s) 1414
BspQI GCTCTTC 1 cut(s) 960
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 1192
BsrI ACTGG 5 cut(s) 339, 1279, 1341, 1422, 1543
BssECI CCNNGG 3 cut(s) 1102, 1319, 1576
BssMI GATC 5 cut(s) 154, 427, 1088, 1240, 1406
BssT1I CCWWGG 3 cut(s) 1102, 1319, 1576
Bst2UI CCWGG 1 cut(s) 1706
Bst4CI ACNGT 8 cut(s) 181, 514, 686, 1058, 1621, 1663, 1735, 1741
Bst6I CTCTTC 1 cut(s) 960
BstBAI YACGTR 2 cut(s) 887, 1616
BstC8I GCNNGC 7 cut(s) 192, 364, 624, 1081, 1142, 1215, 1595
BstDEI CTNAG 7 cut(s) 896, 935, 946, 1038, 1296, 1524, 1656
BstDSI CCRYGG 2 cut(s) 1319, 1576
BstF5I GGATG 3 cut(s) 868, 1177, 1696
BstH2I RGCGCY 1 cut(s) 954
BstHHI GCGC 2 cut(s) 953, 1280
BstKTI GATC 5 cut(s) 157, 430, 1091, 1243, 1409
BstMAI GTCTC 2 cut(s) 62, 1652
BstMBI GATC 5 cut(s) 154, 427, 1088, 1240, 1406
BstMWI GCNNNNNNNGC 6 cut(s) 26, 950, 959, 1360, 1478, 1684
BstNI CCWGG 1 cut(s) 1706
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 1704
BstSFI CTRYAG 3 cut(s) 27, 620, 1057
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 712, 974, 1222, 1519
BstX2I RGATCY 2 cut(s) 1088, 1406
BstYI RGATCY 2 cut(s) 1088, 1406
Bsu36I CCTNAGG 1 cut(s) 946
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 5 cut(s) 134, 366, 1363, 1481, 1510
BtgI CCRYGG 2 cut(s) 1319, 1576
BtsCI GGATG 3 cut(s) 868, 1177, 1696
BtsI GCAGTG 1 cut(s) 617
BtsIMutI CAGTG 8 cut(s) 177, 332, 498, 510, 617, 691, 1054, 1668
BveI ACCTGC 1 cut(s) 1376
Cac8I GCNNGC 7 cut(s) 192, 364, 624, 1081, 1142, 1215, 1595
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 2 cut(s) 953, 1280
Cfr13I GGNCC 6 cut(s) 702, 1099, 1316, 1388, 1480, 1541
Csp6I GTAC 4 cut(s) 36, 203, 1175, 1617
CviQI GTAC 4 cut(s) 36, 203, 1175, 1617
DdeI CTNAG 7 cut(s) 896, 935, 946, 1038, 1296, 1524, 1656
DpnI GATC 5 cut(s) 156, 429, 1090, 1242, 1408
DpnII GATC 5 cut(s) 154, 427, 1088, 1240, 1406
DraIII CACNNNGTG 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 132, 1361
Eam1104I CTCTTC 1 cut(s) 960
EarI CTCTTC 1 cut(s) 960
Eco130I CCWWGG 3 cut(s) 1102, 1319, 1576
Eco147I AGGCCT 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 5 cut(s) 702, 1099, 1316, 1388, 1541
Eco57I CTGAAG 1 cut(s) 1005
Eco81I CCTNAGG 1 cut(s) 946
EcoO109I RGGNCCY 1 cut(s) 1388
EcoRII CCWGG 1 cut(s) 1704
EcoT14I CCWWGG 3 cut(s) 1102, 1319, 1576
EcoT22I ATGCAT 2 cut(s) 214, 451
ErhI CCWWGG 3 cut(s) 1102, 1319, 1576
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 1 cut(s) 1503
FauI CCCGC 2 cut(s) 46, 1190
FauNDI CATATG 2 cut(s) 1000, 1683
Fnu4HI GCNGC 5 cut(s) 132, 726, 963, 1211, 1533
FokI GGATG 3 cut(s) 875, 1164, 1703
Fsp4HI GCNGC 5 cut(s) 132, 726, 963, 1211, 1533
FspBI CTAG 4 cut(s) 423, 782, 857, 1634
GlaI GCGC 2 cut(s) 952, 1279
GluI GCNGC 5 cut(s) 132, 726, 963, 1211, 1533
HaeII RGCGCY 1 cut(s) 954
HaeIII GGCC 5 cut(s) 134, 366, 1363, 1481, 1510
HapII CCGG 1 cut(s) 1688
HhaI GCGC 2 cut(s) 953, 1280
Hin6I GCGC 2 cut(s) 951, 1278
HinP1I GCGC 2 cut(s) 951, 1278
HindIII AAGCTT 2 cut(s) 46, 414
HinfI GANTC 5 cut(s) 124, 664, 1300, 1340, 1516
HpaII CCGG 1 cut(s) 1688
HphI GGTGA 2 cut(s) 556, 1055
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 7 cut(s) 100, 271, 765, 985, 1299, 1406, 1460
Hpy188III TCNNGA 5 cut(s) 238, 526, 971, 1233, 1257
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 4 cut(s) 276, 465, 1304, 1401
HpyCH4III ACNGT 8 cut(s) 181, 514, 686, 1058, 1621, 1663, 1735, 1741
HpyCH4IV ACGT 6 cut(s) 323, 719, 886, 913, 980, 1615
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 950, 959, 1360, 1478, 1684
HpyF3I CTNAG 7 cut(s) 896, 935, 946, 1038, 1296, 1524, 1656
HpySE526I ACGT 6 cut(s) 323, 719, 886, 913, 980, 1615
HspAI GCGC 2 cut(s) 951, 1278
Kzo9I GATC 5 cut(s) 154, 427, 1088, 1240, 1406
LguI GCTCTTC 1 cut(s) 960
LmnI GCTCC 3 cut(s) 1500, 1583, 1590
Lsp1109I GCAGC 4 cut(s) 712, 974, 1222, 1519
LweI GCATC 5 cut(s) 458, 853, 964, 1453, 1460
MaeI CTAG 4 cut(s) 423, 782, 857, 1634
MaeII ACGT 6 cut(s) 323, 719, 886, 913, 980, 1615
MaeIII GTNAC 5 cut(s) 648, 812, 1061, 1729, 1735
MalI GATC 5 cut(s) 156, 429, 1090, 1242, 1408
MboI GATC 5 cut(s) 154, 427, 1088, 1240, 1406
MboII GAAGA 6 cut(s) 947, 998, 1202, 1499, 1581, 1742
MfeI CAATTG 2 cut(s) 62, 903
MflI RGATCY 2 cut(s) 1088, 1406
MhlI GDGCHC 2 cut(s) 323, 1588
MlsI TGGCCA 1 cut(s) 1363
MluNI TGGCCA 1 cut(s) 1363
MlyI GAGTC 1 cut(s) 1525
MmeI TCCRAC 6 cut(s) 163, 720, 1077, 1154, 1393, 1438
Mox20I TGGCCA 1 cut(s) 1363
Mph1103I ATGCAT 2 cut(s) 214, 451
MroXI GAANNNNTTC 1 cut(s) 1723
MscI TGGCCA 1 cut(s) 1363
MseI TTAA 2 cut(s) 87, 800
Msp20I TGGCCA 1 cut(s) 1363
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 1 cut(s) 1688
MspR9I CCNGG 1 cut(s) 1706
MunI CAATTG 2 cut(s) 62, 903
Mva1269I GAATGC 3 cut(s) 451, 848, 1280
MvaI CCWGG 1 cut(s) 1706
MwoI GCNNNNNNNGC 6 cut(s) 26, 950, 959, 1360, 1478, 1684
NcoI CCATGG 2 cut(s) 1319, 1576
NdeI CATATG 2 cut(s) 1000, 1683
NdeII GATC 5 cut(s) 154, 427, 1088, 1240, 1406
NlaIV GGNNCC 2 cut(s) 1029, 1502
NmuCI GTSAC 2 cut(s) 812, 1061
NsiI ATGCAT 2 cut(s) 214, 451
NspI RCATGY 1 cut(s) 149
PceI AGGCCT 1 cut(s) 366
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 960
PcsI WCGNNNNNNNCGW 1 cut(s) 436
PctI GAATGC 3 cut(s) 451, 848, 1280
PdmI GAANNNNTTC 1 cut(s) 1723
PfeI GAWTC 4 cut(s) 124, 664, 1300, 1340
PflMI CCANNNNNTGG 1 cut(s) 859
PfoI TCCNGGA 1 cut(s) 1704
PkrI GCNGC 5 cut(s) 133, 727, 964, 1212, 1534
PleI GAGTC 1 cut(s) 1524
PpsI GAGTC 1 cut(s) 1524
Ppu21I YACGTR 2 cut(s) 887, 1616
PpuMI RGGWCCY 1 cut(s) 1388
PscI ACATGT 1 cut(s) 145
Psp5II RGGWCCY 1 cut(s) 1388
Psp6I CCWGG 1 cut(s) 1704
PspGI CCWGG 1 cut(s) 1704
PspN4I GGNNCC 2 cut(s) 1029, 1502
PspPI GGNCC 6 cut(s) 702, 1099, 1316, 1388, 1480, 1541
PspPPI RGGWCCY 1 cut(s) 1388
PstI CTGCAG 2 cut(s) 31, 624
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 2 cut(s) 1088, 1406
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 4 cut(s) 37, 204, 1176, 1618
RsaNI GTAC 4 cut(s) 36, 203, 1175, 1617
SapI GCTCTTC 1 cut(s) 960
SaqAI TTAA 2 cut(s) 87, 800
SatI GCNGC 5 cut(s) 132, 726, 963, 1211, 1533
Sau3AI GATC 5 cut(s) 154, 427, 1088, 1240, 1406
Sau96I GGNCC 6 cut(s) 702, 1099, 1316, 1388, 1480, 1541
SchI GAGTC 1 cut(s) 1525
ScrFI CCNGG 1 cut(s) 1706
SduI GDGCHC 2 cut(s) 323, 1588
SfaNI GCATC 5 cut(s) 458, 853, 964, 1453, 1460
SfcI CTRYAG 3 cut(s) 27, 620, 1057
SinI GGWCC 5 cut(s) 702, 1099, 1316, 1388, 1541
SmlI CTYRAG 2 cut(s) 236, 1084
SmoI CTYRAG 2 cut(s) 236, 1084
SseBI AGGCCT 1 cut(s) 366
SsiI CCGC 4 cut(s) 10, 53, 131, 1183
SspMI CTAG 4 cut(s) 423, 782, 857, 1634
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 1704
StyI CCWWGG 3 cut(s) 1102, 1319, 1576
TaaI ACNGT 8 cut(s) 181, 514, 686, 1058, 1621, 1663, 1735, 1741
TaiI ACGT 6 cut(s) 326, 722, 889, 916, 983, 1618
TaqI TCGA 3 cut(s) 288, 430, 1243
TatI WGTACW 2 cut(s) 202, 1174
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 4 cut(s) 124, 664, 1300, 1340
Tru1I TTAA 2 cut(s) 87, 800
Tru9I TTAA 2 cut(s) 87, 800
TscAI CASTG 8 cut(s) 184, 339, 498, 517, 624, 691, 1061, 1668
TseFI GTSAC 2 cut(s) 812, 1061
TseI GCWGC 4 cut(s) 725, 962, 1210, 1532
Tsp45I GTSAC 2 cut(s) 812, 1061
TspDTI ATGAA 8 cut(s) 656, 827, 947, 1023, 1061, 1113, 1185, 1203
TspGWI ACGGA 1 cut(s) 1603
TspRI CASTG 8 cut(s) 184, 339, 498, 517, 624, 691, 1061, 1668
Van91I CCANNNNNTGG 1 cut(s) 859
VpaK11BI GGWCC 5 cut(s) 702, 1099, 1316, 1388, 1541
XapI RAATTY 3 cut(s) 196, 766, 1723
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 1723
XspI CTAG 4 cut(s) 423, 782, 857, 1634
Zsp2I ATGCAT 2 cut(s) 214, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.