AT5G51840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014009
Physical Location & Seq
Forward (+)
21071944 .. 21074662
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51840.1

Sequence Viewer

Length: 738 bp
ATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGCCGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAGAGCAAGTTCAGCTGAGGAAATACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAAGGGAATTTGGAAACCTTTCAATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAATGGAACACTTGAGAAAGAAAATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGAAAGAAGAAGAAGCGCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTGAAGGATGAAGAAGCAACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAAAGCAGCAATACGCAGTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAATCCAAATCGATCATCTACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTAGACAGCGCACCAGCAGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCACGGGAACGAGGAAGGTGGTAAAGAACATGGACAGAGACCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGAAACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAATGAACAAAGGCAGAGGAGGTTGGACAGGTGCTGGATTCGATGTCGATGGTAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

245

Amino Acids

27.09

Weight (kDa)

7.79

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 295
AclWI GGATC 4 cut(s) 8, 21, 256, 269
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 44, 636
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 2 cut(s) 381, 404
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 7 cut(s) 158, 180, 190, 280, 308, 424, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 3 cut(s) 62, 112, 614
AluI AGCT 3 cut(s) 62, 112, 614
Alw26I GTCTC 3 cut(s) 253, 485, 595
AlwI GGATC 4 cut(s) 8, 21, 256, 269
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 1 cut(s) 544
ApeKI GCWGC 5 cut(s) 215, 269, 311, 390, 521
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 175
AspLEI GCGC 2 cut(s) 295, 515
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 545, 546
AsuHPI GGTGA 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 203
BamHI GGATCC 2 cut(s) 13, 261
BbsI GAAGAC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 5 cut(s) 227, 256, 323, 402, 533
BccI CCATC 2 cut(s) 38, 719
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcnI CCSGG 2 cut(s) 545, 546
BcoDI GTCTC 3 cut(s) 253, 485, 595
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 501
BisI GCNGC 5 cut(s) 216, 270, 312, 391, 522
BlsI GCNGC 5 cut(s) 217, 271, 313, 392, 523
Bme1390I CCNGG 2 cut(s) 545, 546
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 3 cut(s) 15, 40, 263
BmrFI CCNGG 2 cut(s) 545, 546
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 2 cut(s) 250, 434
BpuMI CCSGG 2 cut(s) 545, 546
Bsa29I ATCGAT 1 cut(s) 454
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 544, 565
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 454
BseDI CCNNGG 2 cut(s) 544, 565
BseGI GGATG 2 cut(s) 157, 337
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 21, 104
BseRI GAGGAG 2 cut(s) 143, 708
BseXI GCAGC 5 cut(s) 227, 256, 323, 402, 533
Bsh1236I CGCG 1 cut(s) 295
BshVI ATCGAT 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 2 cut(s) 488, 545
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 3 cut(s) 253, 485, 595
Bso31I GGTCTC 1 cut(s) 595
BsoBI CYCGRG 1 cut(s) 544
Bsp143I GATC 4 cut(s) 13, 33, 261, 455
BspCNI CTCAG 2 cut(s) 22, 105
BspDI ATCGAT 1 cut(s) 454
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 15, 40, 263
BspPI GGATC 4 cut(s) 8, 21, 256, 269
BspQI GCTCTTC 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 544, 565
BssMI GATC 4 cut(s) 13, 33, 261, 455
BssNI GRCGYC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 93, 658
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 527
BstDEI CTNAG 4 cut(s) 30, 113, 207, 273
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 157, 337
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 2 cut(s) 295, 515
BstKTI GATC 4 cut(s) 16, 36, 264, 458
BstMAI GTCTC 3 cut(s) 253, 485, 595
BstMBI GATC 4 cut(s) 13, 33, 261, 455
BstMWI GCNNNNNNNGC 6 cut(s) 59, 109, 299, 308, 521, 527
BstSCI CCNGG 2 cut(s) 543, 544
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 5 cut(s) 227, 256, 323, 402, 533
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 13, 261
BstYI RGATCY 2 cut(s) 13, 261
Bsu15I ATCGAT 1 cut(s) 454
BsuTUI ATCGAT 1 cut(s) 454
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 2 cut(s) 157, 337
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 710
CfoI GCGC 2 cut(s) 295, 515
Cfr13I GGNCC 1 cut(s) 203
Cfr9I CCCGGG 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 454
Csp6I GTAC 2 cut(s) 380, 403
CviAII CATG 2 cut(s) 266, 593
CviJI RGCY 6 cut(s) 29, 41, 62, 112, 524, 614
CviKI_1 RGCY 6 cut(s) 29, 41, 62, 112, 524, 614
CviQI GTAC 2 cut(s) 380, 403
DdeI CTNAG 4 cut(s) 30, 113, 207, 273
DpnI GATC 4 cut(s) 15, 35, 263, 457
DpnII GATC 4 cut(s) 13, 33, 261, 455
DraI TTTAAA 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 93, 658
EarI CTCTTC 2 cut(s) 93, 658
Eco31I GGTCTC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 44, 636
Eco88I CYCGRG 1 cut(s) 544
FaeI CATG 2 cut(s) 269, 596
FaiI YATR 3 cut(s) 138, 267, 594
FatI CATG 2 cut(s) 265, 592
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 216, 270, 312, 391, 522
FokI GGATG 2 cut(s) 164, 344
Fsp4HI GCNGC 5 cut(s) 216, 270, 312, 391, 522
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 294, 514
GluI GCNGC 5 cut(s) 216, 270, 312, 391, 522
HapII CCGG 2 cut(s) 488, 545
HhaI GCGC 2 cut(s) 295, 515
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 269, 596
Hin6I GCGC 2 cut(s) 293, 513
HinP1I GCGC 2 cut(s) 293, 513
HinfI GANTC 5 cut(s) 352, 445, 623, 649, 714
HpaII CCGG 2 cut(s) 488, 545
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 2 cut(s) 13, 38
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 19, 322, 572, 611
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 53, 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 109, 299, 308, 521, 527
HpyF3I CTNAG 4 cut(s) 30, 113, 207, 273
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 269, 596
HspAI GCGC 2 cut(s) 293, 513
Kzo9I GATC 4 cut(s) 13, 33, 261, 455
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 38, 67
Lsp1109I GCAGC 5 cut(s) 227, 256, 323, 402, 533
LweI GCATC 1 cut(s) 323
MaeI CTAG 1 cut(s) 434
MalI GATC 4 cut(s) 15, 35, 263, 457
MboI GATC 4 cut(s) 13, 33, 261, 455
MboII GAAGA 8 cut(s) 97, 110, 296, 299, 347, 374, 441, 675
MflI RGATCY 2 cut(s) 13, 261
MluCI AATT 6 cut(s) 144, 164, 185, 419, 669, 733
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 680
MnlI CCTC 9 cut(s) 88, 108, 121, 409, 568, 651, 659, 686, 689
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 112, 614
MspI CCGG 2 cut(s) 488, 545
MspR9I CCNGG 2 cut(s) 545, 546
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 6 cut(s) 59, 109, 299, 308, 521, 527
NciI CCSGG 2 cut(s) 545, 546
NdeII GATC 4 cut(s) 13, 33, 261, 455
NlaIII CATG 2 cut(s) 269, 596
NlaIV GGNNCC 3 cut(s) 15, 40, 263
PciSI GCTCTTC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 4 cut(s) 445, 623, 649, 714
PkrI GCNGC 5 cut(s) 217, 271, 313, 392, 523
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 15, 40, 263
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 710
PsuI RGATCY 2 cut(s) 13, 261
PvuII CAGCTG 2 cut(s) 112, 614
RsaI GTAC 2 cut(s) 381, 404
RsaNI GTAC 2 cut(s) 380, 403
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 5 cut(s) 216, 270, 312, 391, 522
Sau3AI GATC 4 cut(s) 13, 33, 261, 455
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 545, 546
SetI ASST 9 cut(s) 64, 114, 177, 208, 556, 583, 616, 700, 709
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 501
SinI GGWCC 1 cut(s) 203
SmaI CCCGGG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 229, 413
SmoI CTYRAG 2 cut(s) 229, 413
Sse9I AATT 6 cut(s) 144, 164, 185, 419, 669, 733
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 543, 544
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 5 cut(s) 93, 243, 454, 717, 723
TasI AATT 6 cut(s) 144, 164, 185, 419, 669, 733
TfiI GAWTC 4 cut(s) 445, 623, 649, 714
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 1 cut(s) 202
TseI GCWGC 5 cut(s) 215, 269, 311, 390, 521
TspDTI ATGAA 2 cut(s) 348, 695
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 507
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.