Rh1BG369800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014009
Physical Location & Seq
Forward (+)
50038764 .. 50041495
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG369800.1

Sequence Viewer

Length: 759 bp
ATGGCTTCGAAAACGAATCAGTCTCTGCTGCCGGAGATCGGACCCGACGGCCTTGCTCGCGAGGCCTCCGTCATTACCTACACTGAGAAAGTGATCGAGGAAGAACAGCATCAATTAAGGAAATATATAGAAGAAAATTACTCTAAAATCCGCGATGTCGAGCGAGAGTTTGCAAGTCTTTCAATGGAAATGAAACTCACAGCTGGGCCGAAAAAATCAGCTCTTGAACACTTGAGGAAGAAAATAGAGATGGCAACAGAGAGAATTCACGCTGCAAAGCTCAAGGAAGATCAAGCAAAAAAGGCATGGGAAGCAGCAGCAAAGGTCGTTAAGGATGAGGAAGCCATCAAGCAGAAGCTATGTGAAGACTTAAATAGTCTGGTACAAGAAAGCAGCAATACTCAGTTTTCAAGACTGGAGGAGTTAAAAAGACGACTTGAAGCTTTGAACCCAACCAGGTCCTCGGCCTCGGTTTCTCTTGATGGGAACTCAATGGGACTTGCTCAAAGTGTCACCACTCCAGATTCCTCTCAAGTTCCTGGTGGAGTCACTGGTAACATACCTAATCAAGGAAATGCTGGAAACGTTCCGGTCATGAATGGGAACAATCAGCAGCTTCCTGTTGAGGGTGAAGGAAGAGGAAAGAAGAAAAACCAGTTCCATGGAAGAGGGAAGGGACTTGGAGCCGTGGCCAAGGGCAGAGGACCTCCTGCGCCTGGTTGGACGGGATCTGGGTTTGATGTGGATGGTAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

252

Amino Acids

27.4

Weight (kDa)

8.82

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 23 - 147 3.3e-06 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 60, 153
AciI CCGC 1 cut(s) 151
AclI AACGTT 1 cut(s) 585
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
AgsI TTSAA 5 cut(s) 183, 227, 411, 440, 448
AjnI CCWGG 3 cut(s) 455, 538, 715
AluBI AGCT 6 cut(s) 203, 221, 280, 358, 443, 616
AluI AGCT 6 cut(s) 203, 221, 280, 358, 443, 616
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 736
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 5 cut(s) 49, 63, 206, 465, 690
ApeKI GCWGC 6 cut(s) 28, 272, 314, 317, 393, 613
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 4 cut(s) 41, 206, 459, 704
AsuHPI GGTGA 2 cut(s) 505, 641
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 3 cut(s) 41, 459, 704
BalI TGGCCA 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BccI CCATC 4 cut(s) 244, 353, 476, 740
BceAI ACGGC 2 cut(s) 64, 671
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 3 cut(s) 457, 540, 717
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
BlsI GCNGC 6 cut(s) 30, 274, 316, 319, 395, 615
Bme1390I CCNGG 3 cut(s) 457, 540, 717
Bme18I GGWCC 3 cut(s) 41, 459, 704
BmgT120I GGNCC 4 cut(s) 41, 206, 459, 704
BmiI GGNNCC 2 cut(s) 43, 685
BmrFI CCNGG 3 cut(s) 457, 540, 717
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 2 cut(s) 437, 504
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 3 cut(s) 253, 266, 516
BsaJI CCNNGG 5 cut(s) 462, 468, 661, 687, 693
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
Bse1I ACTGG 3 cut(s) 420, 556, 655
BseBI CCWGG 3 cut(s) 457, 540, 717
BseDI CCNNGG 5 cut(s) 462, 468, 661, 687, 693
BseGI GGATG 2 cut(s) 340, 751
BseLI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BseMII CTCAG 2 cut(s) 75, 416
BseNI ACTGG 3 cut(s) 420, 556, 655
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 2 cut(s) 60, 153
BshFI GGCC 5 cut(s) 51, 65, 208, 467, 692
BsiSI CCGG 2 cut(s) 32, 590
BslFI GGGAC 2 cut(s) 510, 690
BslI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 510, 690
BsnI GGCC 5 cut(s) 51, 65, 208, 467, 692
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 36, 93, 289, 728
Bsp19I CCATGG 1 cut(s) 661
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 1 cut(s) 151
BspANI GGCC 5 cut(s) 51, 65, 208, 467, 692
BspCNI CTCAG 2 cut(s) 76, 415
BspFNI CGCG 2 cut(s) 60, 153
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 43, 685
BspPI GGATC 1 cut(s) 736
BspT104I TTCGAA 1 cut(s) 8
BsrI ACTGG 3 cut(s) 420, 556, 655
BssECI CCNNGG 5 cut(s) 462, 468, 661, 687, 693
BssMI GATC 4 cut(s) 36, 93, 289, 728
BssT1I CCWWGG 2 cut(s) 661, 693
Bst2UI CCWGG 3 cut(s) 457, 540, 717
Bst6I CTCTTC 2 cut(s) 631, 661
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 84, 402
BstDSI CCRYGG 2 cut(s) 661, 687
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 340, 751
BstFNI CGCG 2 cut(s) 60, 153
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 4 cut(s) 39, 96, 292, 731
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 36, 93, 289, 728
BstMWI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
BstNI CCWGG 3 cut(s) 457, 540, 717
BstSCI CCNGG 3 cut(s) 455, 538, 715
BstUI CGCG 2 cut(s) 60, 153
BstV1I GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 728
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 1 cut(s) 728
BsuRI GGCC 5 cut(s) 51, 65, 208, 467, 692
BtgI CCRYGG 2 cut(s) 661, 687
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 340, 751
BtsIMutI CAGTG 2 cut(s) 81, 549
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 4 cut(s) 41, 206, 459, 704
CsiI ACCWGGT 1 cut(s) 455
Csp6I GTAC 1 cut(s) 383
CviAII CATG 3 cut(s) 306, 595, 662
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 2 cut(s) 84, 402
DpnI GATC 4 cut(s) 38, 95, 291, 730
DpnII GATC 4 cut(s) 36, 93, 289, 728
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 2 cut(s) 631, 661
EarI CTCTTC 2 cut(s) 631, 661
Eco130I CCWWGG 2 cut(s) 661, 693
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 41, 459, 704
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 2 cut(s) 459, 704
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 455, 538, 715
EcoT14I CCWWGG 2 cut(s) 661, 693
ErhI CCWWGG 2 cut(s) 661, 693
FaeI CATG 3 cut(s) 309, 598, 665
FaiI YATR 7 cut(s) 126, 128, 307, 361, 560, 596, 663
FaqI GGGAC 2 cut(s) 510, 690
FatI CATG 3 cut(s) 305, 594, 661
Fnu4HI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
GlaI GCGC 1 cut(s) 714
GluI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 437, 504
HaeIII GGCC 5 cut(s) 51, 65, 208, 467, 692
HapII CCGG 2 cut(s) 32, 590
HhaI GCGC 1 cut(s) 715
Hin1II CATG 3 cut(s) 309, 598, 665
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 16, 524, 546
HpaII CCGG 2 cut(s) 32, 590
HphI GGTGA 2 cut(s) 505, 641
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 6 cut(s) 59, 224, 411, 479, 521, 595
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 626, 667
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 2 cut(s) 173, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
HpyF3I CTNAG 2 cut(s) 84, 402
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 3 cut(s) 309, 598, 665
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 36, 93, 289, 728
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
LweI GCATC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 455
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 3 cut(s) 511, 547, 554
MalI GATC 4 cut(s) 38, 95, 291, 730
MboI GATC 4 cut(s) 36, 93, 289, 728
MboII GAAGA 8 cut(s) 113, 143, 250, 299, 377, 648, 658, 678
MflI RGATCY 1 cut(s) 728
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 4 cut(s) 113, 136, 264, 754
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 701
Mox20I TGGCCA 1 cut(s) 692
MscI TGGCCA 1 cut(s) 692
MseI TTAA 4 cut(s) 116, 330, 371, 425
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 32, 590
MspR9I CCNGG 3 cut(s) 457, 540, 717
MvaI CCWGG 3 cut(s) 457, 540, 717
MvnI CGCG 2 cut(s) 60, 153
MwoI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
NcoI CCATGG 1 cut(s) 661
NdeII GATC 4 cut(s) 36, 93, 289, 728
NlaIII CATG 3 cut(s) 309, 598, 665
NlaIV GGNNCC 2 cut(s) 43, 685
NmeAIII GCCGAG 1 cut(s) 443
NmuCI GTSAC 2 cut(s) 511, 547
NruI TCGCGA 1 cut(s) 60
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 594
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 16, 524
PkrI GCNGC 6 cut(s) 30, 274, 316, 319, 395, 615
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 2 cut(s) 459, 704
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 2 cut(s) 459, 704
Psp6I CCWGG 3 cut(s) 455, 538, 715
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 455, 538, 715
PspN4I GGNNCC 2 cut(s) 43, 685
PspPI GGNCC 4 cut(s) 41, 206, 459, 704
PspPPI RGGWCCY 2 cut(s) 459, 704
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 4 cut(s) 116, 330, 371, 425
SatI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
Sau3AI GATC 4 cut(s) 36, 93, 289, 728
Sau96I GGNCC 4 cut(s) 41, 206, 459, 704
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 3 cut(s) 457, 540, 717
SexAI ACCWGGT 1 cut(s) 455
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 3 cut(s) 41, 459, 704
SmlI CTYRAG 3 cut(s) 232, 281, 531
SmoI CTYRAG 3 cut(s) 232, 281, 531
Sse9I AATT 4 cut(s) 113, 136, 264, 754
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 151
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 455, 538, 715
StyI CCWWGG 2 cut(s) 661, 693
TaiI ACGT 1 cut(s) 588
TaqI TCGA 3 cut(s) 8, 96, 159
TasI AATT 4 cut(s) 113, 136, 264, 754
TfiI GAWTC 2 cut(s) 16, 524
Tru1I TTAA 4 cut(s) 116, 330, 371, 425
Tru9I TTAA 4 cut(s) 116, 330, 371, 425
TscAI CASTG 2 cut(s) 88, 556
TseFI GTSAC 2 cut(s) 511, 547
TseI GCWGC 6 cut(s) 28, 272, 314, 317, 393, 613
Tsp45I GTSAC 2 cut(s) 511, 547
TspDTI ATGAA 2 cut(s) 206, 611
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 88, 556
VpaK11BI GGWCC 3 cut(s) 41, 459, 704
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.