Rorug01G0394500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014009
Physical Location & Seq
Forward (+)
50474662 .. 50475540
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0394500.1

Sequence Viewer

Length: 879 bp
ATGGTTTTGAAGTTGTCCGTGAGGTTTCTCAAATTTGCAGCTGATGTTGAGGTGACGATGGTGAAGGTGGAAGTCTCTAAGTCTGATGAGGTAGTAAAACTACGGAAGAAGCTAGAGATGACGGGCTTCCCTCTCCCACAAGATTATATTTTTATGCACAAAATGTCCGTGATGTTCGAGACGACAACGTTTGAGTGGCACAATATGTTGGACGACGAACATCATACTATAGATGTTGTTTCAGTGCCGAAGCAACCATCAACTATGGGGGACTCTATCACGGCGCTGGTGTCCATCCGTGGGAGTAAGAGTATTTCACAAAGAGACTATGAAGCAACTCAAAAGTCAAGCACAATCGTACCTGACTCCTGCCGAAAGAAGGGGGGTTTTTGGTCATTGTTTCATCAACTAGCGACAACTAGTGGCCTGTGCTTTGCTAATTTGCAGAACAACAGGAAACTATCTACGTATCCTGCTATTAGCGACAATGATACTATTTACGTTGTTGATATGTTCAAAAACAATAAATTTAAGTTGAATGTCGGTGTCATTGTCGAGGGCGAGGAAATTATGGTGAAGCTGAATCCTTTCAAAGAGGTGAAGCAGCTATGGGCTGAGCTAAAGAAGAAAAAGAGGTTATGTCTCCCACAACAGAATTGCTTCATCATGGTCCTCAATAACTGTCATTATCTTATGGACGAGGAAGTGCAGTTTGCGTGGTACTTGATGTATCATCATGGTGAGGTGGATTTGAGATACAAAGATGGTGTAGTGCAAGTTGGCAGTAGTCATACAGTTAGAGTAAAAGTCTGTCCATATAATGAGATCCTGAACAACAACTCAGAGAGCCCAGCTTCTTTTTTCGCAGTTGGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

292

Amino Acids

33.53

Weight (kDa)

8.4

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 188
AclWI GGATC 1 cut(s) 820
AcsI RAATTY 2 cut(s) 32, 527
AfaI GTAC 2 cut(s) 360, 722
AfiI CCNNNNNNNGG 2 cut(s) 300, 379
AgsI TTSAA 4 cut(s) 10, 517, 538, 592
AhlI ACTAGT 1 cut(s) 419
AluBI AGCT 6 cut(s) 41, 112, 580, 607, 619, 854
AluI AGCT 6 cut(s) 41, 112, 580, 607, 619, 854
Alw26I GTCTC 4 cut(s) 79, 173, 318, 647
AlwI GGATC 1 cut(s) 820
AoxI GGCC 1 cut(s) 424
ApeKI GCWGC 2 cut(s) 38, 604
ApoI RAATTY 2 cut(s) 32, 527
Asp700I GAANNNNTTC 2 cut(s) 587, 659
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 670
AsuHPI GGTGA 5 cut(s) 64, 73, 586, 610, 752
AvaII GGWCC 1 cut(s) 670
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BanII GRGCYC 1 cut(s) 851
BbvI GCAGC 2 cut(s) 50, 616
BccI CCATC 4 cut(s) 52, 265, 302, 758
BceAI ACGGC 1 cut(s) 297
BciVI GTATCC 1 cut(s) 480
BcoDI GTCTC 4 cut(s) 79, 173, 318, 647
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 113, 410, 420
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 287
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 2 cut(s) 39, 605
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 2 cut(s) 40, 606
Bme18I GGWCC 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 670
Bpu1102I GCTNAGC 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 379
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 2 cut(s) 300, 379
BseMII CTCAG 2 cut(s) 606, 855
BseXI GCAGC 2 cut(s) 50, 616
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 728
BshFI GGCC 1 cut(s) 426
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 300, 379
BsmAI GTCTC 4 cut(s) 79, 173, 318, 647
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 426
Bsp1286I GDGCHC 1 cut(s) 851
Bsp143I GATC 1 cut(s) 825
Bsp1720I GCTNAGC 1 cut(s) 615
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 2 cut(s) 607, 854
BspPI GGATC 1 cut(s) 820
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 1 cut(s) 825
Bst4CI ACNGT 2 cut(s) 683, 796
BstBAI YACGTR 1 cut(s) 468
BstDEI CTNAG 3 cut(s) 78, 615, 841
BstDSI CCRYGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 828
BstMAI GTCTC 4 cut(s) 79, 173, 318, 647
BstMBI GATC 1 cut(s) 825
BstSFI CTRYAG 1 cut(s) 228
BstSNI TACGTA 1 cut(s) 468
BstV1I GCAGC 2 cut(s) 50, 616
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 298
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 249
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 670
Csp6I GTAC 2 cut(s) 359, 721
CviAII CATG 2 cut(s) 667, 737
CviQI GTAC 2 cut(s) 359, 721
DdeI CTNAG 3 cut(s) 78, 615, 841
DpnI GATC 1 cut(s) 827
DpnII GATC 1 cut(s) 825
Eco105I TACGTA 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 851
Eco47I GGWCC 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 851
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 2 cut(s) 670, 740
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 666, 736
Fnu4HI GCNGC 2 cut(s) 39, 605
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 2 cut(s) 39, 605
FspBI CTAG 3 cut(s) 113, 410, 420
GlaI GCGC 1 cut(s) 285
GluI GCNGC 2 cut(s) 39, 605
GsaI CCCAGC 1 cut(s) 854
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 1 cut(s) 426
HhaI GCGC 1 cut(s) 286
Hin1II CATG 2 cut(s) 670, 740
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 3 cut(s) 272, 365, 583
HphI GGTGA 5 cut(s) 64, 73, 586, 610, 752
Hpy188I TCNGA 2 cut(s) 85, 844
Hpy188III TCNNGA 2 cut(s) 178, 829
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 58, 373
HpyCH4III ACNGT 2 cut(s) 683, 796
HpyCH4IV ACGT 3 cut(s) 188, 467, 501
HpyCH4V TGCA 5 cut(s) 38, 157, 445, 709, 775
HpyF3I CTNAG 3 cut(s) 78, 615, 841
HpySE526I ACGT 3 cut(s) 188, 467, 501
Hsp92II CATG 2 cut(s) 670, 740
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 825
LpnPI CCDG 8 cut(s) 272, 375, 382, 439, 440, 486, 842, 864
Lsp1109I GCAGC 2 cut(s) 50, 616
MaeI CTAG 3 cut(s) 113, 410, 420
MaeII ACGT 3 cut(s) 188, 467, 501
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 827
MboI GATC 1 cut(s) 825
MboII GAAGA 2 cut(s) 118, 637
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 1 cut(s) 851
MluCI AATT 5 cut(s) 32, 439, 527, 567, 655
MlyI GAGTC 2 cut(s) 266, 359
MmeI TCCRAC 2 cut(s) 189, 850
MroXI GAANNNNTTC 2 cut(s) 587, 659
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 738
MspA1I CMGCKG 1 cut(s) 41
NdeII GATC 1 cut(s) 825
NlaIII CATG 2 cut(s) 670, 740
NmuCI GTSAC 1 cut(s) 52
PdmI GAANNNNTTC 2 cut(s) 587, 659
PfeI GAWTC 1 cut(s) 583
PkrI GCNGC 2 cut(s) 40, 606
PleI GAGTC 2 cut(s) 266, 359
PpsI GAGTC 2 cut(s) 266, 359
Ppu21I YACGTR 1 cut(s) 468
Psp1406I AACGTT 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 850
PspPI GGNCC 1 cut(s) 670
PsuI RGATCY 1 cut(s) 825
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 360, 722
RsaNI GTAC 2 cut(s) 359, 721
RseI CAYNNNNRTG 1 cut(s) 738
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 2 cut(s) 39, 605
Sau3AI GATC 1 cut(s) 825
Sau96I GGNCC 1 cut(s) 670
SchI GAGTC 2 cut(s) 266, 359
SduI GDGCHC 1 cut(s) 851
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 738
SnaBI TACGTA 1 cut(s) 468
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 5 cut(s) 32, 439, 527, 567, 655
SspMI CTAG 3 cut(s) 113, 410, 420
TaaI ACNGT 2 cut(s) 683, 796
TaiI ACGT 3 cut(s) 191, 470, 504
TaqI TCGA 2 cut(s) 177, 555
TasI AATT 5 cut(s) 32, 439, 527, 567, 655
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 38, 604
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 345, 392, 652
TspGWI ACGGA 4 cut(s) 7, 118, 157, 287
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 2 cut(s) 32, 527
XmnI GAANNNNTTC 2 cut(s) 587, 659
XspI CTAG 3 cut(s) 113, 410, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.