Rroxscaffold_4G00282290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014009
Physical Location & Seq
Reverse (-)
4344951 .. 4348270
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282290.1

Sequence Viewer

Length: 759 bp
ATGGCTTCGAAAACGAATCAGTCTCTGCTGCCGGAGATCGGACCCGACGGCCTTGCTCGCGAGGCCTCCGTCATTACCTACACTGAGAAAGTGATCGAGGAAGAACAGCATCAATTGAGGAAATATATAGAAGAAAATTACTCTAAAATCCGCGATGTCGAGCGAGAGTTTGCAAGTCTTTCAATGGAAATGAAACTCACAGCTGGGCCGAAAAAATCAGCTCTTGAACACTTGAGGAAGAAAATAGAGATGGCAACAGAGAGAATTCACGCTGCGAAGCTCAAGGAAGATCAAGCAAAAAAGGCATGGGAAGCAGCAGCAAAGGTCGTTAAGGATGAGGAAGCCATCAAGCAGAAGCTATGTGAAGACTTAAATAGTCTGGTACAAGAAAGCAGCAATACTCAGTTTTCAAGACTGGAGGAGTTAAAAAGACGACTTGAAGCTTTGAACCCAACCAGGTCATCGGCCTCGGTTTCTCTTGATGGGAACTCAATGGGACTTGCTCAAAGTGTCACCGCTCCCGATTCCTCTCAAGTTCCTGGTGGAGTCACTGGTAACATACCTAACCAAGGAAATGCTGGAAACATTCCGGTCATGAATGGGAACAATCAGCAGCTTCCTGTTGAGGGTGAAGGAAGAGGAAAGAAGAAAAACCAGTTCCATGGAAGAGGGAAGGGACTTGGAGCCGTGCCCAAGGGCAGAGGACCTCCTGCGCCTGGTTGGACGGGGTCTGGGTTTGATGTGGATGGTAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

252

Amino Acids

27.41

Weight (kDa)

8.82

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 23 - 147 3.3e-06 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 518
AccII CGCG 2 cut(s) 60, 153
AciI CCGC 2 cut(s) 151, 516
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
AgsI TTSAA 5 cut(s) 183, 227, 411, 440, 448
AjnI CCWGG 3 cut(s) 455, 538, 715
AluBI AGCT 6 cut(s) 203, 221, 280, 358, 443, 616
AluI AGCT 6 cut(s) 203, 221, 280, 358, 443, 616
Alw26I GTCTC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 4 cut(s) 49, 63, 206, 465
ApeKI GCWGC 6 cut(s) 28, 272, 314, 317, 393, 613
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 41, 206, 704
AsuHPI GGTGA 2 cut(s) 505, 641
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 2 cut(s) 41, 704
BaeGI GKGCMC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BccI CCATC 4 cut(s) 244, 353, 476, 740
BceAI ACGGC 2 cut(s) 64, 671
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 3 cut(s) 457, 540, 717
BcoDI GTCTC 1 cut(s) 27
BisI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
BlsI GCNGC 6 cut(s) 30, 274, 316, 319, 395, 615
Bme1390I CCNGG 3 cut(s) 457, 540, 717
Bme18I GGWCC 2 cut(s) 41, 704
BmgT120I GGNCC 3 cut(s) 41, 206, 704
BmiI GGNNCC 2 cut(s) 43, 685
BmrFI CCNGG 3 cut(s) 457, 540, 717
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 3 cut(s) 253, 266, 516
BsaJI CCNNGG 4 cut(s) 468, 568, 661, 693
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
Bse1I ACTGG 3 cut(s) 420, 556, 655
BseBI CCWGG 3 cut(s) 457, 540, 717
BseDI CCNNGG 4 cut(s) 468, 568, 661, 693
BseGI GGATG 2 cut(s) 340, 751
BseLI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BseMII CTCAG 2 cut(s) 75, 416
BseNI ACTGG 3 cut(s) 420, 556, 655
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 2 cut(s) 60, 153
BshFI GGCC 4 cut(s) 51, 65, 208, 467
BsiSI CCGG 2 cut(s) 32, 590
BslFI GGGAC 2 cut(s) 510, 690
BslI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 510, 690
BsnI GGCC 4 cut(s) 51, 65, 208, 467
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 3 cut(s) 36, 93, 289
Bsp19I CCATGG 1 cut(s) 661
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 2 cut(s) 151, 516
BspANI GGCC 4 cut(s) 51, 65, 208, 467
BspCNI CTCAG 2 cut(s) 76, 415
BspFNI CGCG 2 cut(s) 60, 153
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 43, 685
BspT104I TTCGAA 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 518
BsrI ACTGG 3 cut(s) 420, 556, 655
BssECI CCNNGG 4 cut(s) 468, 568, 661, 693
BssMI GATC 3 cut(s) 36, 93, 289
BssT1I CCWWGG 3 cut(s) 568, 661, 693
Bst2UI CCWGG 3 cut(s) 457, 540, 717
Bst6I CTCTTC 2 cut(s) 631, 661
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 84, 402
BstDSI CCRYGG 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 340, 751
BstFNI CGCG 2 cut(s) 60, 153
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 3 cut(s) 39, 96, 292
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 36, 93, 289
BstMWI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
BstNI CCWGG 3 cut(s) 457, 540, 717
BstSCI CCNGG 3 cut(s) 455, 538, 715
BstSLI GKGCMC 1 cut(s) 693
BstUI CGCG 2 cut(s) 60, 153
BstV1I GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
BstV2I GAAGAC 1 cut(s) 372
BstXI CCANNNNNNTGG 1 cut(s) 662
BsuRI GGCC 4 cut(s) 51, 65, 208, 467
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 340, 751
BtsIMutI CAGTG 2 cut(s) 81, 549
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 594
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 41, 206, 704
CsiI ACCWGGT 1 cut(s) 455
Csp6I GTAC 1 cut(s) 383
CviAII CATG 3 cut(s) 306, 595, 662
CviQI GTAC 1 cut(s) 383
DdeI CTNAG 2 cut(s) 84, 402
DpnI GATC 3 cut(s) 38, 95, 291
DpnII GATC 3 cut(s) 36, 93, 289
Eam1104I CTCTTC 2 cut(s) 631, 661
EarI CTCTTC 2 cut(s) 631, 661
Eco130I CCWWGG 3 cut(s) 568, 661, 693
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 41, 704
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 455, 538, 715
EcoT14I CCWWGG 3 cut(s) 568, 661, 693
ErhI CCWWGG 3 cut(s) 568, 661, 693
FaeI CATG 3 cut(s) 309, 598, 665
FaiI YATR 7 cut(s) 126, 128, 307, 361, 560, 596, 663
FaqI GGGAC 2 cut(s) 510, 690
FatI CATG 3 cut(s) 305, 594, 661
Fnu4HI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
GlaI GCGC 1 cut(s) 714
GluI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 4 cut(s) 51, 65, 208, 467
HapII CCGG 2 cut(s) 32, 590
HhaI GCGC 1 cut(s) 715
Hin1II CATG 3 cut(s) 309, 598, 665
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 16, 524, 546
HpaII CCGG 2 cut(s) 32, 590
HphI GGTGA 2 cut(s) 505, 641
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 6 cut(s) 59, 224, 411, 479, 521, 595
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 626, 667
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
HpyF3I CTNAG 2 cut(s) 84, 402
Hsp92II CATG 3 cut(s) 309, 598, 665
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 3 cut(s) 36, 93, 289
LmnI GCTCC 2 cut(s) 523, 683
Lsp1109I GCAGC 6 cut(s) 15, 259, 326, 329, 405, 625
LweI GCATC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 455
MaeIII GTNAC 3 cut(s) 511, 547, 554
MalI GATC 3 cut(s) 38, 95, 291
MbiI CCGCTC 1 cut(s) 518
MboI GATC 3 cut(s) 36, 93, 289
MboII GAAGA 8 cut(s) 113, 143, 250, 299, 377, 648, 658, 678
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 4 cut(s) 113, 136, 264, 754
MlyI GAGTC 1 cut(s) 555
MmeI TCCRAC 1 cut(s) 701
MseI TTAA 3 cut(s) 330, 371, 425
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 32, 590
MspR9I CCNGG 3 cut(s) 457, 540, 717
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 3 cut(s) 457, 540, 717
MvnI CGCG 2 cut(s) 60, 153
MwoI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
NcoI CCATGG 1 cut(s) 661
NdeII GATC 3 cut(s) 36, 93, 289
NlaIII CATG 3 cut(s) 309, 598, 665
NlaIV GGNNCC 2 cut(s) 43, 685
NmuCI GTSAC 2 cut(s) 511, 547
NruI TCGCGA 1 cut(s) 60
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 594
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 16, 524
PflFI GACNNNGTC 1 cut(s) 727
PkrI GCNGC 6 cut(s) 30, 274, 316, 319, 395, 615
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 3 cut(s) 455, 538, 715
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 455, 538, 715
PspN4I GGNNCC 2 cut(s) 43, 685
PspPI GGNCC 3 cut(s) 41, 206, 704
PspPPI RGGWCCY 1 cut(s) 704
PstNI CAGNNNCTG 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 330, 371, 425
SatI GCNGC 6 cut(s) 29, 273, 315, 318, 394, 614
Sau3AI GATC 3 cut(s) 36, 93, 289
Sau96I GGNCC 3 cut(s) 41, 206, 704
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 3 cut(s) 457, 540, 717
SduI GDGCHC 1 cut(s) 693
SexAI ACCWGGT 1 cut(s) 455
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 41, 704
SmlI CTYRAG 3 cut(s) 232, 281, 531
SmoI CTYRAG 3 cut(s) 232, 281, 531
Sse9I AATT 4 cut(s) 113, 136, 264, 754
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 2 cut(s) 151, 516
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 455, 538, 715
StyI CCWWGG 3 cut(s) 568, 661, 693
TaqI TCGA 3 cut(s) 8, 96, 159
TasI AATT 4 cut(s) 113, 136, 264, 754
TfiI GAWTC 2 cut(s) 16, 524
Tru1I TTAA 3 cut(s) 330, 371, 425
Tru9I TTAA 3 cut(s) 330, 371, 425
TscAI CASTG 2 cut(s) 88, 556
TseFI GTSAC 2 cut(s) 511, 547
TseI GCWGC 6 cut(s) 28, 272, 314, 317, 393, 613
Tsp45I GTSAC 2 cut(s) 511, 547
TspDTI ATGAA 2 cut(s) 206, 611
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 88, 556
Tth111I GACNNNGTC 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 41, 704
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.