Prupe.2G287200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014009
Physical Location & Seq
Forward (+)
28301938 .. 28305522
3585 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G287200.1

Sequence Viewer

Length: 762 bp
ATGGCTTCGAATTCGAATCCTTCTCTGCTGCCTGAGATCGGAGCCGATGGCCTTGCTCGAGAGGCTTCTGTCATTACATACACTGAGAAGGTCATCGAGGAAGAACAGAATCAATTACGGAAATACATTCAAGAAAATTATACTAAAATTCGTGATGTCGAGCGAGAGCTGGCAAATCTTTCAATGGAGATGAAGCTCACGGCTGGGCCAAAAAAATCAGCTCTTGAACATTTGAGGAAGAAAATAGAGATGTCAACAGAGAGAATTCATGCTGCCAAGCTGAAGGAAGAACAAGCACGAAAGGCGTGGGAAGCAGCAGTACAGGTTGTAAAGGACGAGGAAGCTATCAAGCAGAGCCTGTGTGAAGACTTAAACCAACTGGTACAAGAAAGCAGCAGTTCTCAGTTTACAAGACTGGAGGAGTTAAAAAGACGACTTGAAGCTTTGAACCCAAGCAGATCATCGATCTCTGTTTCTTATGATAGGAAATCAATGGGAGTTGCTCAAAGTGGCACGGCGCCAGATGCTTCTACAGTTCCTCGATCTACAGAATCAGGCAGAGGCACTGAAAACACCCCTAATCCAGGAAATGGTGGAAATGTTTCGGTCACAAATGGCCACAATCAGCAGCCTTCTGCTGAGGGAGAAGGAAGACTAAAGAAGAAAAGTCAATTCCAAGGAAAAGGGAGGGGAATTGGAGCTGTGCCCAAGGGCAGGGGATCTCCCGCGCCTGGCTGGACAGGTGCTGGGTTCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

254

Amino Acids

27.53

Weight (kDa)

8.85

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 590
AccII CGCG 1 cut(s) 728
AciI CCGC 1 cut(s) 726
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 3 cut(s) 10, 147, 264
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 2 cut(s) 321, 384
AfiI CCNNNNNNNGG 5 cut(s) 38, 584, 590, 714, 731
AgsI TTSAA 5 cut(s) 131, 183, 227, 440, 448
AjnI CCWGG 2 cut(s) 583, 730
AluBI AGCT 7 cut(s) 169, 196, 221, 280, 344, 443, 701
AluI AGCT 7 cut(s) 169, 196, 221, 280, 344, 443, 701
AlwI GGATC 1 cut(s) 727
AlwNI CAGNNNCTG 2 cut(s) 358, 746
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 3 cut(s) 49, 206, 616
ApeKI GCWGC 5 cut(s) 28, 272, 314, 393, 628
ApoI RAATTY 3 cut(s) 10, 147, 264
Asp700I GAANNNNTTC 1 cut(s) 601
AspLEI GCGC 2 cut(s) 520, 730
AspS9I GGNCC 1 cut(s) 206
AsuII TTCGAA 2 cut(s) 8, 14
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 708
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BbsI GAAGAC 2 cut(s) 372, 658
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 15, 259, 326, 405, 640
BccI CCATC 1 cut(s) 41
BceAI ACGGC 2 cut(s) 216, 531
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 2 cut(s) 585, 732
BfmI CTRYAG 2 cut(s) 531, 546
BfoI RGCGCY 1 cut(s) 521
BisI GCNGC 5 cut(s) 29, 273, 315, 394, 629
BlsI GCNGC 5 cut(s) 30, 274, 316, 395, 630
Bme1390I CCNGG 2 cut(s) 585, 732
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 43, 519
BmrFI CCNGG 2 cut(s) 585, 732
BmsI GCATC 2 cut(s) 514, 745
BpiI GAAGAC 2 cut(s) 372, 658
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 2 cut(s) 8, 14
Bsa29I ATCGAT 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 2 cut(s) 676, 708
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 584, 590, 714, 731
Bse1I ACTGG 2 cut(s) 384, 420
BseBI CCWGG 2 cut(s) 585, 732
BseCI ATCGAT 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 676, 708
BseLI CCNNNNNNNGG 5 cut(s) 38, 584, 590, 714, 731
BseMII CTCAG 4 cut(s) 24, 75, 416, 630
BseNI ACTGG 2 cut(s) 384, 420
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 5 cut(s) 15, 259, 326, 405, 640
BseYI CCCAGC 2 cut(s) 203, 746
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 3 cut(s) 51, 208, 618
BshNI GGYRCC 1 cut(s) 517
BshVI ATCGAT 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 57
BslI CCNNNNNNNGG 5 cut(s) 38, 584, 590, 714, 731
BsnI GGCC 3 cut(s) 51, 208, 618
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 2 cut(s) 8, 14
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 5 cut(s) 36, 458, 465, 542, 719
BspACI CCGC 1 cut(s) 726
BspANI GGCC 3 cut(s) 51, 208, 618
BspCNI CTCAG 4 cut(s) 25, 76, 415, 631
BspDI ATCGAT 1 cut(s) 464
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 2 cut(s) 43, 519
BspPI GGATC 1 cut(s) 727
BspT104I TTCGAA 2 cut(s) 8, 14
BspT107I GGYRCC 1 cut(s) 517
BsrI ACTGG 2 cut(s) 384, 420
BssECI CCNNGG 2 cut(s) 676, 708
BssMI GATC 5 cut(s) 36, 458, 465, 542, 719
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 676, 708
Bst2UI CCWGG 2 cut(s) 585, 732
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 1 cut(s) 518
BstBI TTCGAA 2 cut(s) 8, 14
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 5 cut(s) 33, 84, 402, 639, 759
BstENI CCTNNNNNAGG 1 cut(s) 582
BstFNI CGCG 1 cut(s) 728
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 2 cut(s) 520, 730
BstKTI GATC 5 cut(s) 39, 461, 468, 545, 722
BstMBI GATC 5 cut(s) 36, 458, 465, 542, 719
BstMWI GCNNNNNNNGC 4 cut(s) 62, 302, 311, 524
BstNI CCWGG 2 cut(s) 585, 732
BstSCI CCNGG 2 cut(s) 583, 730
BstSFI CTRYAG 2 cut(s) 531, 546
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 5 cut(s) 15, 259, 326, 405, 640
BstV2I GAAGAC 2 cut(s) 372, 658
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 464
BsuRI GGCC 3 cut(s) 51, 208, 618
BsuTUI ATCGAT 1 cut(s) 464
BtsIMutI CAGTG 2 cut(s) 81, 564
Cac8I GCNNGC 1 cut(s) 171
CaiI CAGNNNCTG 2 cut(s) 358, 746
CfoI GCGC 2 cut(s) 520, 730
Cfr13I GGNCC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 464
Csp6I GTAC 2 cut(s) 320, 383
CviAII CATG 1 cut(s) 269
CviQI GTAC 2 cut(s) 320, 383
DdeI CTNAG 5 cut(s) 33, 84, 402, 639, 759
DinI GGCGCC 1 cut(s) 519
DpnI GATC 5 cut(s) 38, 460, 467, 544, 721
DpnII GATC 5 cut(s) 36, 458, 465, 542, 719
EaeI YGGCCR 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 676, 708
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoRI GAATTC 2 cut(s) 10, 264
EcoRII CCWGG 2 cut(s) 583, 730
EcoT14I CCWWGG 2 cut(s) 676, 708
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 676, 708
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 79, 141, 270, 480
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 733
Fnu4HI GCNGC 5 cut(s) 29, 273, 315, 394, 629
Fsp4HI GCNGC 5 cut(s) 29, 273, 315, 394, 629
GlaI GCGC 2 cut(s) 519, 729
GluI GCNGC 5 cut(s) 29, 273, 315, 394, 629
GsaI CCCAGC 2 cut(s) 207, 750
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 3 cut(s) 51, 208, 618
HhaI GCGC 2 cut(s) 520, 730
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 2 cut(s) 518, 728
HinP1I GCGC 2 cut(s) 518, 728
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 16, 109, 551
Hpy166II GTNNAC 2 cut(s) 255, 408
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 4 cut(s) 59, 131, 152, 224
Hpy8I GTNNAC 2 cut(s) 255, 408
HpyAV CCTTC 5 cut(s) 30, 82, 277, 641, 642
HpyCH4III ACNGT 1 cut(s) 535
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 302, 311, 524
HpyF3I CTNAG 5 cut(s) 33, 84, 402, 639, 759
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 2 cut(s) 518, 728
KasI GGCGCC 1 cut(s) 517
Kzo9I GATC 5 cut(s) 36, 458, 465, 542, 719
LmnI GCTCC 2 cut(s) 41, 698
Lsp1109I GCAGC 5 cut(s) 15, 259, 326, 405, 640
LweI GCATC 2 cut(s) 514, 745
MaeIII GTNAC 1 cut(s) 607
MalI GATC 5 cut(s) 38, 460, 467, 544, 721
MboI GATC 5 cut(s) 36, 458, 465, 542, 719
MboII GAAGA 6 cut(s) 113, 250, 299, 377, 663, 673
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 708
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 7 cut(s) 10, 113, 136, 147, 264, 671, 693
MluNI TGGCCA 1 cut(s) 618
Mly113I GGCGCC 1 cut(s) 518
MnlI CCTC 9 cut(s) 55, 91, 228, 331, 412, 549, 554, 634, 681
Mox20I TGGCCA 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 601
MscI TGGCCA 1 cut(s) 618
MseI TTAA 2 cut(s) 371, 425
Msp20I TGGCCA 1 cut(s) 618
MspR9I CCNGG 2 cut(s) 585, 732
MvaI CCWGG 2 cut(s) 585, 732
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 4 cut(s) 62, 302, 311, 524
NarI GGCGCC 1 cut(s) 518
NdeII GATC 5 cut(s) 36, 458, 465, 542, 719
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 43, 519
NmuCI GTSAC 1 cut(s) 607
NspV TTCGAA 2 cut(s) 8, 14
PaeR7I CTCGAG 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 3 cut(s) 16, 109, 551
PflMI CCANNNNNTGG 1 cut(s) 590
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 5 cut(s) 30, 274, 316, 395, 630
PluTI GGCGCC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 583, 730
PspFI CCCAGC 2 cut(s) 203, 746
PspGI CCWGG 2 cut(s) 583, 730
PspN4I GGNNCC 2 cut(s) 43, 519
PspPI GGNCC 1 cut(s) 206
PstNI CAGNNNCTG 2 cut(s) 358, 746
PsuI RGATCY 1 cut(s) 719
RsaI GTAC 2 cut(s) 321, 384
RsaNI GTAC 2 cut(s) 320, 383
SaqAI TTAA 2 cut(s) 371, 425
SatI GCNGC 5 cut(s) 29, 273, 315, 394, 629
Sau3AI GATC 5 cut(s) 36, 458, 465, 542, 719
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 585, 732
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 2 cut(s) 514, 745
SfcI CTRYAG 2 cut(s) 531, 546
SfoI GGCGCC 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 57
SfuI TTCGAA 2 cut(s) 8, 14
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 7 cut(s) 10, 113, 136, 147, 264, 671, 693
SsiI CCGC 1 cut(s) 726
SspDI GGCGCC 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 583, 730
StyI CCWWGG 2 cut(s) 676, 708
TaaI ACNGT 1 cut(s) 535
TaqI TCGA 8 cut(s) 8, 14, 58, 96, 159, 464, 541, 753
TaqII GACCGA 1 cut(s) 595
TasI AATT 7 cut(s) 10, 113, 136, 147, 264, 671, 693
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 3 cut(s) 16, 109, 551
Tru1I TTAA 2 cut(s) 371, 425
Tru9I TTAA 2 cut(s) 371, 425
TscAI CASTG 2 cut(s) 88, 571
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 5 cut(s) 28, 272, 314, 393, 628
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 2 cut(s) 206, 257
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 2 cut(s) 88, 571
Van91I CCANNNNNTGG 1 cut(s) 590
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 3 cut(s) 10, 147, 264
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.