Rorug01G0394600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014009
Physical Location & Seq
Forward (+)
50475604 .. 50478098
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0394600.1

Sequence Viewer

Length: 894 bp
ATGGAATGGGTTGTTAAAGTCCGAGACGTTGAACCCGAAAATCGTTGTCTTTTGTTACATCCACTTTCCACCTCGTTGCCTTTAGAGCCGAATTCAGAGTCGTTTCCAGATGAATTAAACGTCTTGGAATTTCAGGTATTGGAATTAGCAAGATGTTATAGTCTGCGTAAATCCAATTCCAATGAGGCAGAACACAAGGTGGTCGTATCCTCGGATCCTCATTGGCATGCGCCCATGGTGATGGCTGAGGCAAAACTATACTACTGGGATTTCAGTACCGCTAGTGTTGAGATTCAAGAGTGCACCTTAGTACGGGATATACTCTTTGAACACCACGAATTCGAAGATGTTATTTTTCATAAGAGCAAGTTCTATGTTGTTGCCAAGAATGGTACTACTGTATCCATTGATTCATCCTTGAAGATGACACAGGTCGCGTATCCAACAACTTGTTCTTGCAGTAAGAAATTGGTGGAGTCATTGGGGGATCTACTTTTAGTTGTGAAATGTGCGAGGACTTTGAGGTGGAGATGTCCTCATAATCCAACTCATCATGGATGCAAGGTTTACAAGTTGAACGAACCTGAGAAGCAATGGGTTGAAATGAAAAGCTTGAATAAAAATCGAAGTTTGTTTGTGGGTGACTACACCAGCTTCTCTGCTTCTACTCTAGATATTCCCAGATGCTTGGGGAATCACATTTTTTTCTCATCAGATCCATACTTAGGGTTTCATCGATCCAAGATCAAGTTGTTCGTGAGGCTTCTCATGGATGCGGAGGTGGTAGTGGTGGAGGTGATAGTCAACGAACACGATGAGGTAGGCCGGGGATCTCAGGGAGCATCTACAGGTGGCAGACTTCCTTCTCCCTCCACATTATCTCTTTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

297

Amino Acids

33.76

Weight (kDa)

6.23

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 245 2e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 437
AciI CCGC 2 cut(s) 279, 776
AclWI GGATC 6 cut(s) 209, 222, 495, 710, 732, 838
AcsI RAATTY 3 cut(s) 91, 128, 338
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 3 cut(s) 277, 312, 394
AfiI CCNNNNNNNGG 2 cut(s) 312, 725
AgsI TTSAA 7 cut(s) 32, 296, 329, 421, 577, 602, 616
AjuI GAANNNNNNNTTGG 2 cut(s) 436, 468
AluBI AGCT 2 cut(s) 612, 654
AluI AGCT 2 cut(s) 612, 654
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 18
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 6 cut(s) 209, 222, 495, 710, 732, 838
AoxI GGCC 1 cut(s) 823
ApaLI GTGCAC 1 cut(s) 301
ApoI RAATTY 3 cut(s) 91, 128, 338
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 827
AsuHPI GGTGA 3 cut(s) 250, 653, 808
AsuII TTCGAA 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 305
BaeI ACNNNNGTAYC 4 cut(s) 384, 384, 417, 417
BamHI GGATCC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 235
BciVI GTATCC 3 cut(s) 217, 412, 450
BcnI CCSGG 1 cut(s) 827
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 282, 671
BfmI CTRYAG 1 cut(s) 846
BfuI GTATCC 3 cut(s) 217, 412, 450
Bme1390I CCNGG 1 cut(s) 827
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 827
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 4 cut(s) 548, 674, 763, 851
BmuI ACTGGG 1 cut(s) 274
BoxI GACNNNNGTC 1 cut(s) 431
BplI GAGNNNNNCTC 2 cut(s) 520, 552
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 736
BsaJI CCNNGG 3 cut(s) 210, 234, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 725
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 599
BseCI ATCGAT 1 cut(s) 736
BseDI CCNNGG 3 cut(s) 210, 234, 826
BseGI GGATG 4 cut(s) 58, 413, 563, 778
BseLI CCNNNNNNNGG 2 cut(s) 312, 725
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 3 cut(s) 237, 576, 848
BseNI ACTGG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 825
BshVI ATCGAT 1 cut(s) 736
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 826
BslI CCNNNNNNNGG 2 cut(s) 312, 725
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 1 cut(s) 825
Bsp119I TTCGAA 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 6 cut(s) 214, 487, 715, 737, 744, 830
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 2 cut(s) 279, 776
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 3 cut(s) 238, 577, 847
BspDI ATCGAT 1 cut(s) 736
BspFNI CGCG 1 cut(s) 437
BspLI GGNNCC 1 cut(s) 216
BspPI GGATC 6 cut(s) 209, 222, 495, 710, 732, 838
BspT104I TTCGAA 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 599
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 210, 234, 826
BssMI GATC 6 cut(s) 214, 487, 715, 737, 744, 830
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 400
BstBI TTCGAA 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 5 cut(s) 246, 307, 585, 724, 834
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 4 cut(s) 58, 413, 563, 778
BstFNI CGCG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 6 cut(s) 217, 490, 718, 740, 747, 833
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 6 cut(s) 214, 487, 715, 737, 744, 830
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 230
BstPAI GACNNNNGTC 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 825
BstSFI CTRYAG 1 cut(s) 846
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 437
BstX2I RGATCY 4 cut(s) 214, 487, 715, 830
BstXI CCANNNNNNTGG 2 cut(s) 241, 688
BstYI RGATCY 4 cut(s) 214, 487, 715, 830
Bsu15I ATCGAT 1 cut(s) 736
BsuI GTATCC 3 cut(s) 217, 412, 450
BsuRI GGCC 1 cut(s) 825
BsuTUI ATCGAT 1 cut(s) 736
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 4 cut(s) 58, 413, 563, 778
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 736
Csp6I GTAC 3 cut(s) 276, 311, 393
CviAII CATG 4 cut(s) 227, 235, 554, 769
CviJI RGCY 6 cut(s) 88, 245, 612, 654, 763, 825
CviKI_1 RGCY 6 cut(s) 88, 245, 612, 654, 763, 825
CviQI GTAC 3 cut(s) 276, 311, 393
DdeI CTNAG 5 cut(s) 246, 307, 585, 724, 834
DpnI GATC 6 cut(s) 216, 489, 717, 739, 746, 832
DpnII GATC 6 cut(s) 214, 487, 715, 737, 744, 830
DraIII CACNNNGTG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 234
EcoRI GAATTC 2 cut(s) 91, 338
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 892
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 4 cut(s) 230, 238, 557, 772
FatI CATG 4 cut(s) 226, 234, 553, 768
FokI GGATG 4 cut(s) 45, 400, 570, 785
FspBI CTAG 2 cut(s) 282, 671
GlaI GCGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 825
HapII CCGG 1 cut(s) 826
HhaI GCGC 1 cut(s) 232
Hin1II CATG 4 cut(s) 230, 238, 557, 772
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 5 cut(s) 98, 292, 410, 476, 694
HpaII CCGG 1 cut(s) 826
HphI GGTGA 3 cut(s) 250, 653, 808
Hpy166II GTNNAC 3 cut(s) 303, 568, 805
Hpy188I TCNGA 4 cut(s) 23, 97, 214, 715
Hpy188III TCNNGA 4 cut(s) 107, 296, 671, 757
Hpy8I GTNNAC 3 cut(s) 303, 568, 805
HpyAV CCTTC 1 cut(s) 873
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 27, 120
HpyCH4V TGCA 4 cut(s) 303, 459, 561, 890
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 5 cut(s) 246, 307, 585, 724, 834
HpySE526I ACGT 2 cut(s) 27, 120
Hsp92II CATG 4 cut(s) 230, 238, 557, 772
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 6 cut(s) 214, 487, 715, 737, 744, 830
LmnI GCTCC 1 cut(s) 839
LweI GCATC 4 cut(s) 548, 674, 763, 851
MaeI CTAG 2 cut(s) 282, 671
MaeII ACGT 2 cut(s) 27, 120
MaeIII GTNAC 2 cut(s) 54, 641
MalI GATC 6 cut(s) 216, 489, 717, 739, 746, 832
MboI GATC 6 cut(s) 214, 487, 715, 737, 744, 830
MboII GAAGA 2 cut(s) 356, 433
MflI RGATCY 4 cut(s) 214, 487, 715, 830
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 7 cut(s) 91, 113, 128, 143, 175, 338, 467
MlyI GAGTC 2 cut(s) 107, 485
MmeI TCCRAC 2 cut(s) 467, 569
Mph1103I ATGCAT 1 cut(s) 892
MseI TTAA 2 cut(s) 15, 116
MslI CAYNNNNRTG 2 cut(s) 225, 239
MspI CCGG 1 cut(s) 826
MspR9I CCNGG 1 cut(s) 827
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 827
NcoI CCATGG 1 cut(s) 234
NdeII GATC 6 cut(s) 214, 487, 715, 737, 744, 830
NlaIII CATG 4 cut(s) 230, 238, 557, 772
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 892
NspI RCATGY 1 cut(s) 230
NspV TTCGAA 1 cut(s) 342
PaeI GCATGC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 3 cut(s) 292, 410, 694
PleI GAGTC 2 cut(s) 106, 484
PpsI GAGTC 2 cut(s) 106, 484
PshAI GACNNNNGTC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 216
PsuI RGATCY 4 cut(s) 214, 487, 715, 830
RsaI GTAC 3 cut(s) 277, 312, 394
RsaNI GTAC 3 cut(s) 276, 311, 393
RseI CAYNNNNRTG 2 cut(s) 225, 239
SaqAI TTAA 2 cut(s) 15, 116
Sau3AI GATC 6 cut(s) 214, 487, 715, 737, 744, 830
SchI GAGTC 2 cut(s) 107, 485
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 4 cut(s) 548, 674, 763, 851
SfcI CTRYAG 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 225, 239
SphI GCATGC 1 cut(s) 230
Sse9I AATT 7 cut(s) 91, 113, 128, 143, 175, 338, 467
SsiI CCGC 2 cut(s) 279, 776
SspMI CTAG 2 cut(s) 282, 671
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 30, 123
TaqI TCGA 3 cut(s) 342, 625, 736
TasI AATT 7 cut(s) 91, 113, 128, 143, 175, 338, 467
TfiI GAWTC 3 cut(s) 292, 410, 694
Tru1I TTAA 2 cut(s) 15, 116
Tru9I TTAA 2 cut(s) 15, 116
TseFI GTSAC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 5 cut(s) 126, 347, 402, 620, 722
VneI GTGCAC 1 cut(s) 301
XapI RAATTY 3 cut(s) 91, 128, 338
XbaI TCTAGA 1 cut(s) 670
XceI RCATGY 1 cut(s) 230
XspI CTAG 2 cut(s) 282, 671
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.