FvH4_7g28720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014009
Physical Location & Seq
Forward (+)
21258363 .. 21262030
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28720.t1

Sequence Viewer

Length: 759 bp
ATGGCTTCGAAGACGAATCCGTCTCTGATGCCGGAGATCGGACCCGACGGCCTTGCTCGCGAGGCCTCCGTCATTACCTACACTGAGAAAGTGATCGAGGAAGAACAGCATCAATTGAGAAAATATATAGAAGAAAATTACTCTAAAATCCGCGATGTTGAACGAGAGTTTGCAAGTCTTTCAATGGAGATGAAACTCACAGCTGGGCCGAAAAAATCAGCTCTTGAACACTTGAGGAAGAAAATAGAGATAGCAACAGAGAGAATTCATGCTGCGAAACTGAAGGAAGATCAAGCAAAAAAGGCATGGGAAGCAGCAGCAAAGGTTGTTAAGGATGAGGAAGCCATCAAGCAGAAGCTGTGTGATGACTTAAATAGTCTGGTACAAGAAAGCAGCAATACTCAGTTTTCAAGACTGGAGGAGTTAAAAAGACGACTTGAAGCTTTGAACCCAACTAGAGCATCGGCCTCAGTTTCTCTTGATGGGAACTCAATGGGACTTGCTCAAAGTGTCACCACTCCAGATTCCTCTCAGGTTCCTGGTGGAGTCGCTGATAACATGCCTAATCAAGGAAATGCTGGAAACGTTCCGGTCATGAATGGGAACAATCAACAGGCTCCTGTTGAGGGTGAAGGAAGAGGAAAGAAGAAAAGCCAGTACCATGGAAGAGGAAAGGGACTTGGAGCCGTGCCCAAGGGTAGAGGACCTCCTGCACCTGGCTGGACGGGGTCTGGGTTTGATGTGGATGGTAGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

253

Amino Acids

27.36

Weight (kDa)

8.49

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transcrip_act PF04949 23 - 147 2.2e-06 Transcriptional activator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AccII CGCG 2 cut(s) 60, 153
AciI CCGC 1 cut(s) 151
AclI AACGTT 1 cut(s) 585
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 384, 659
AfiI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
AgsI TTSAA 6 cut(s) 161, 183, 227, 411, 440, 448
AjnI CCWGG 2 cut(s) 538, 715
AluBI AGCT 4 cut(s) 203, 221, 358, 443
AluI AGCT 4 cut(s) 203, 221, 358, 443
Alw26I GTCTC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 4 cut(s) 49, 63, 206, 465
ApeKI GCWGC 4 cut(s) 272, 314, 317, 393
ApoI RAATTY 1 cut(s) 264
AspS9I GGNCC 3 cut(s) 41, 206, 704
AsuHPI GGTGA 2 cut(s) 505, 641
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 2 cut(s) 41, 704
BaeGI GKGCMC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 4 cut(s) 259, 326, 329, 405
BccI CCATC 3 cut(s) 353, 476, 740
BceAI ACGGC 2 cut(s) 64, 671
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 2 cut(s) 540, 717
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 456
BisI GCNGC 4 cut(s) 273, 315, 318, 394
BlsI GCNGC 4 cut(s) 274, 316, 319, 395
Bme1390I CCNGG 2 cut(s) 540, 717
Bme18I GGWCC 2 cut(s) 41, 704
BmgT120I GGNCC 3 cut(s) 41, 206, 704
BmiI GGNNCC 4 cut(s) 43, 537, 618, 685
BmrFI CCNGG 2 cut(s) 540, 717
BmsI GCATC 3 cut(s) 18, 118, 470
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 2 cut(s) 437, 504
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 661, 693
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
Bse1I ACTGG 2 cut(s) 420, 655
BseBI CCWGG 2 cut(s) 540, 717
BseDI CCNNGG 2 cut(s) 661, 693
BseGI GGATG 2 cut(s) 340, 751
BseLI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BseMII CTCAG 4 cut(s) 75, 416, 483, 545
BseNI ACTGG 2 cut(s) 420, 655
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 4 cut(s) 259, 326, 329, 405
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 2 cut(s) 60, 153
BshFI GGCC 4 cut(s) 51, 65, 208, 467
BsiSI CCGG 2 cut(s) 32, 590
BslFI GGGAC 2 cut(s) 510, 690
BslI CCNNNNNNNGG 4 cut(s) 38, 569, 626, 716
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 2 cut(s) 510, 690
BsnI GGCC 4 cut(s) 51, 65, 208, 467
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 3 cut(s) 36, 93, 289
Bsp19I CCATGG 1 cut(s) 661
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 1 cut(s) 151
BspANI GGCC 4 cut(s) 51, 65, 208, 467
BspCNI CTCAG 4 cut(s) 76, 415, 482, 544
BspFNI CGCG 2 cut(s) 60, 153
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 4 cut(s) 43, 537, 618, 685
BspT104I TTCGAA 1 cut(s) 8
BsrI ACTGG 2 cut(s) 420, 655
BssECI CCNNGG 2 cut(s) 661, 693
BssMI GATC 3 cut(s) 36, 93, 289
BssT1I CCWWGG 2 cut(s) 661, 693
Bst2UI CCWGG 2 cut(s) 540, 717
Bst6I CTCTTC 2 cut(s) 631, 661
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 4 cut(s) 84, 402, 469, 531
BstDSI CCRYGG 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 340, 751
BstFNI CGCG 2 cut(s) 60, 153
BstKTI GATC 3 cut(s) 39, 96, 292
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 36, 93, 289
BstMWI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
BstNI CCWGG 2 cut(s) 540, 717
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 538, 715
BstSLI GKGCMC 1 cut(s) 693
BstUI CGCG 2 cut(s) 60, 153
BstV1I GCAGC 4 cut(s) 259, 326, 329, 405
BstV2I GAAGAC 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 662
BsuRI GGCC 4 cut(s) 51, 65, 208, 467
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 340, 751
BtsIMutI CAGTG 1 cut(s) 81
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 58
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 594
Cfr13I GGNCC 3 cut(s) 41, 206, 704
Csp6I GTAC 2 cut(s) 383, 658
CviAII CATG 5 cut(s) 269, 306, 559, 595, 662
CviQI GTAC 2 cut(s) 383, 658
DdeI CTNAG 4 cut(s) 84, 402, 469, 531
DpnI GATC 3 cut(s) 38, 95, 291
DpnII GATC 3 cut(s) 36, 93, 289
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 631, 661
EarI CTCTTC 2 cut(s) 631, 661
Eco130I CCWWGG 2 cut(s) 661, 693
Eco147I AGGCCT 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 41, 704
Eco57I CTGAAG 1 cut(s) 302
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 538, 715
EcoT14I CCWWGG 2 cut(s) 661, 693
ErhI CCWWGG 2 cut(s) 661, 693
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 5 cut(s) 272, 309, 562, 598, 665
FaiI YATR 7 cut(s) 126, 128, 270, 307, 560, 596, 663
FaqI GGGAC 2 cut(s) 510, 690
FatI CATG 5 cut(s) 268, 305, 558, 594, 661
Fnu4HI GCNGC 4 cut(s) 273, 315, 318, 394
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 4 cut(s) 273, 315, 318, 394
FspBI CTAG 1 cut(s) 456
GluI GCNGC 4 cut(s) 273, 315, 318, 394
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 437, 504
HaeIII GGCC 4 cut(s) 51, 65, 208, 467
HapII CCGG 2 cut(s) 32, 590
Hin1II CATG 5 cut(s) 272, 309, 562, 598, 665
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 3 cut(s) 16, 524, 546
HpaII CCGG 2 cut(s) 32, 590
HphI GGTGA 2 cut(s) 505, 641
Hpy188I TCNGA 2 cut(s) 27, 41
Hpy188III TCNNGA 6 cut(s) 59, 224, 411, 479, 521, 595
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 277, 626
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 2 cut(s) 173, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
HpyF3I CTNAG 4 cut(s) 84, 402, 469, 531
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 5 cut(s) 272, 309, 562, 598, 665
Kzo9I GATC 3 cut(s) 36, 93, 289
LmnI GCTCC 2 cut(s) 622, 683
Lsp1109I GCAGC 4 cut(s) 259, 326, 329, 405
LweI GCATC 3 cut(s) 18, 118, 470
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 1 cut(s) 511
MalI GATC 3 cut(s) 38, 95, 291
MboI GATC 3 cut(s) 36, 93, 289
MboII GAAGA 8 cut(s) 22, 113, 143, 250, 299, 648, 658, 678
MfeI CAATTG 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 4 cut(s) 113, 136, 264, 754
MlyI GAGTC 1 cut(s) 555
MseI TTAA 3 cut(s) 330, 371, 425
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 32, 590
MspR9I CCNGG 2 cut(s) 540, 717
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 2 cut(s) 540, 717
MvnI CGCG 2 cut(s) 60, 153
MwoI GCNNNNNNNGC 4 cut(s) 57, 62, 302, 311
NcoI CCATGG 1 cut(s) 661
NdeII GATC 3 cut(s) 36, 93, 289
NlaIII CATG 5 cut(s) 272, 309, 562, 598, 665
NlaIV GGNNCC 4 cut(s) 43, 537, 618, 685
NmuCI GTSAC 1 cut(s) 511
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 594
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 16, 524
PflFI GACNNNGTC 1 cut(s) 727
PkrI GCNGC 4 cut(s) 274, 316, 319, 395
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 704
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 704
Psp6I CCWGG 2 cut(s) 538, 715
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 2 cut(s) 538, 715
PspN4I GGNNCC 4 cut(s) 43, 537, 618, 685
PspPI GGNCC 3 cut(s) 41, 206, 704
PspPPI RGGWCCY 1 cut(s) 704
PstNI CAGNNNCTG 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 727
PvuII CAGCTG 1 cut(s) 203
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 384, 659
RsaNI GTAC 2 cut(s) 383, 658
SaqAI TTAA 3 cut(s) 330, 371, 425
SatI GCNGC 4 cut(s) 273, 315, 318, 394
Sau3AI GATC 3 cut(s) 36, 93, 289
Sau96I GGNCC 3 cut(s) 41, 206, 704
SchI GAGTC 1 cut(s) 555
ScrFI CCNGG 2 cut(s) 540, 717
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 3 cut(s) 18, 118, 470
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 41, 704
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 113, 136, 264, 754
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 456
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 538, 715
StyI CCWWGG 2 cut(s) 661, 693
TaiI ACGT 1 cut(s) 588
TaqI TCGA 2 cut(s) 8, 96
TasI AATT 4 cut(s) 113, 136, 264, 754
TfiI GAWTC 2 cut(s) 16, 524
Tru1I TTAA 3 cut(s) 330, 371, 425
Tru9I TTAA 3 cut(s) 330, 371, 425
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 4 cut(s) 272, 314, 317, 393
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 206, 257, 611
TspGWI ACGGA 2 cut(s) 9, 58
TspRI CASTG 1 cut(s) 88
Tth111I GACNNNGTC 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 41, 704
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 562
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.