pycom01g20370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014009
Physical Location & Seq
Forward (+)
18788978 .. 18792270
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20370.6

Sequence Viewer

Length: 903 bp
ATGTCGGCAGCAGCACATGATCTACCTACAATATCCAACGATCCACGGACGATGAAGTGGAACCAGATGACAGGGGAAGAAGAAAATGAGATTTTGAATCAGAAGCCATTTGCTTTGGCTTGGGTTGCTCTTCTGATTCAAATTCCAGTTGAAAAAATGGCGTCGAATTCGAATTTGAATCCGTCGCTGCAGCCTGAGATCGGACCCGACGGCCTTGCTCGCGAGGCTTCTGTCATCACCAACACTGAGAAGATAATCGAGAACGAACAGCTTCAATTAAGAAAATATATTGAAGAAAACTATTCTAAAATTCGTGATGTCGAACGAGAGCTGGCACAGTTGTCAATGGAGATGAAACTCACAGCTGGGCCAAAAAAATCAGCCCTTGAACATTTGAGGAGTAAAATAGAGATGTCAACGGAGAAAATTCATGCCGCCAAGCTGAAGGAAGAACAAGCACGAAAGGTGTGGGAAGCAGCATTACAGGCTGTAAAGGACGAGGAAGCTATCAAGCAGCAGCTATGTGAAGACTTAAACCAACTGGTGCAAGAAAGCAGCAGTTCTCAGTTTACGAGACTGGAGGAGTTGAAAAGACGACTTGAAGCTATGAACCCAAGCAGATCATCAGCTTCCGTTTCTCATGATGGGAAATCAATGGGTCCAGATGCTCCTACAGTTCCGGGATCAAAAGAATCAGGTGGAGTCGCTCAAAACATCCCTAATCCAGGAAATGGTGGAAATGTTTCGGTCGTGAACGGGCACAATCAACAACCTCCGGTTGAGGGAGAAGGAAGGGGAAAGAAGAAAAGTCAGTTCCACGGAAGAGGGAAGGGACTTGGAGCTGTGCCCAAGGGTAGAGGACCTCCTCCGCCGGGATGGACAGGGGCAGGGTTTGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

301

Amino Acids

32.73

Weight (kDa)

6.36

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014009)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51840
fragaria_vesca FvH4_7g28720 FvH4_7g28720
malus_domestica MD00G1004200.v1.1 MD01G1193100.v1.1
prunus_persica Prupe.2G287200_v2.0.a1
pyrus_communis pycom01g20370
rosa_chinensis RchiOBHm_Chr1g0376221
rosa_laevigata RLG00000026618
rosa_roxburghii Rroxscaffold_4G00282290
rosa_rugosa Rorug01G0394500 Rorug01G0394600
rosa_samantha Rh1AG406100 Rh1BG369800 Rh1CG382700 Rh1DG399600
rosa_wichuraiana Rw1G036030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 435, 869
AclWI GGATC 2 cut(s) 35, 691
AcsI RAATTY 5 cut(s) 141, 166, 172, 309, 426
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 161
AfiI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
AgsI TTSAA 9 cut(s) 97, 140, 152, 178, 275, 293, 389, 589, 602
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 9 cut(s) 271, 331, 365, 442, 506, 520, 605, 629, 842
AluI AGCT 9 cut(s) 271, 331, 365, 442, 506, 520, 605, 629, 842
Alw26I GTCTC 1 cut(s) 568
AlwI GGATC 2 cut(s) 35, 691
AoxI GGCC 2 cut(s) 211, 368
ApeKI GCWGC 8 cut(s) 8, 11, 187, 190, 476, 514, 517, 555
ApoI RAATTY 5 cut(s) 141, 166, 172, 309, 426
Asp700I GAANNNNTTC 2 cut(s) 270, 742
AspS9I GGNCC 4 cut(s) 203, 368, 659, 860
AsuC2I CCSGG 2 cut(s) 681, 873
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 3 cut(s) 203, 659, 860
BaeGI GKGCMC 2 cut(s) 762, 849
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BccI CCATC 2 cut(s) 638, 870
BceAI ACGGC 1 cut(s) 226
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciT130I CCWGG 1 cut(s) 726
BcnI CCSGG 2 cut(s) 681, 873
BcoDI GTCTC 1 cut(s) 568
BfmI CTRYAG 2 cut(s) 188, 672
BisI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
BlsI GCNGC 9 cut(s) 10, 13, 189, 192, 436, 478, 516, 519, 557
Bme1390I CCNGG 3 cut(s) 681, 726, 873
Bme18I GGWCC 3 cut(s) 203, 659, 860
BmgT120I GGNCC 4 cut(s) 203, 368, 659, 860
BmiI GGNNCC 3 cut(s) 62, 205, 660
BmrFI CCNGG 3 cut(s) 681, 726, 873
BmsI GCATC 2 cut(s) 655, 886
BpiI GAAGAC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 599
Bpu14I TTCGAA 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 681, 873
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 44, 817, 849
BsaWI WCCGGW 1 cut(s) 775
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
Bse1I ACTGG 3 cut(s) 146, 546, 582
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 44, 817, 849
BseGI GGATG 2 cut(s) 714, 881
BseLI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
BseMII CTCAG 3 cut(s) 186, 237, 578
BseNI ACTGG 3 cut(s) 146, 546, 582
BseRI GAGGAG 3 cut(s) 412, 596, 855
BseSI GKGCMC 2 cut(s) 762, 849
BseXI GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 750
BshFI GGCC 2 cut(s) 213, 370
BsiEI CGRYCG 1 cut(s) 750
BsiSI CCGG 3 cut(s) 680, 776, 872
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 5 cut(s) 200, 725, 731, 782, 872
BsmAI GTCTC 1 cut(s) 568
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 2 cut(s) 213, 370
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 762, 849
Bsp143I GATC 5 cut(s) 19, 40, 198, 620, 683
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 2 cut(s) 435, 869
BspANI GGCC 2 cut(s) 213, 370
BspCNI CTCAG 3 cut(s) 187, 238, 577
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 62, 205, 660
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 2 cut(s) 35, 691
BspQI GCTCTTC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 170
BsrI ACTGG 3 cut(s) 146, 546, 582
BssECI CCNNGG 3 cut(s) 44, 817, 849
BssMI GATC 5 cut(s) 19, 40, 198, 620, 683
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 339, 676
Bst6I CTCTTC 2 cut(s) 135, 817
BstACI GRCGYC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 220, 333
BstDEI CTNAG 4 cut(s) 195, 246, 564, 900
BstDSI CCRYGG 2 cut(s) 44, 817
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 2 cut(s) 714, 881
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 5 cut(s) 22, 43, 201, 623, 686
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 5 cut(s) 19, 40, 198, 620, 683
BstMCI CGRYCG 1 cut(s) 750
BstMWI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
BstNI CCWGG 1 cut(s) 726
BstSCI CCNGG 3 cut(s) 679, 724, 871
BstSFI CTRYAG 2 cut(s) 188, 672
BstSLI GKGCMC 2 cut(s) 762, 849
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
BstV2I GAAGAC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 213, 370
BtgI CCRYGG 2 cut(s) 44, 817
BtsCI GGATG 2 cut(s) 714, 881
BtsIMutI CAGTG 1 cut(s) 243
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 2 cut(s) 220, 333
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 4 cut(s) 203, 368, 659, 860
CseI GACGC 1 cut(s) 150
CviAII CATG 3 cut(s) 17, 431, 641
DdeI CTNAG 4 cut(s) 195, 246, 564, 900
DpnI GATC 5 cut(s) 21, 42, 200, 622, 685
DpnII GATC 5 cut(s) 19, 40, 198, 620, 683
Eam1104I CTCTTC 2 cut(s) 135, 817
EarI CTCTTC 2 cut(s) 135, 817
EciI GGCGGA 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 849
Eco47I GGWCC 3 cut(s) 203, 659, 860
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 849
FaeI CATG 3 cut(s) 20, 434, 644
FaiI YATR 6 cut(s) 18, 288, 432, 523, 608, 642
FaqI GGGAC 1 cut(s) 846
FatI CATG 3 cut(s) 16, 430, 640
Fnu4HI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
FokI GGATG 2 cut(s) 701, 888
Fsp4HI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
GluI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 2 cut(s) 213, 370
HapII CCGG 3 cut(s) 680, 776, 872
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 3 cut(s) 20, 434, 644
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 5 cut(s) 97, 136, 178, 692, 702
HpaII CCGG 3 cut(s) 680, 776, 872
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 417, 570, 754
Hpy188I TCNGA 3 cut(s) 102, 135, 203
Hpy188III TCNNGA 6 cut(s) 221, 259, 314, 641, 662, 751
Hpy8I GTNNAC 3 cut(s) 417, 570, 754
Hpy99I CGWCG 3 cut(s) 166, 187, 212
HpyAV CCTTC 4 cut(s) 439, 782, 786, 823
HpyCH4III ACNGT 2 cut(s) 339, 676
HpyCH4V TGCA 2 cut(s) 190, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
HpyF3I CTNAG 4 cut(s) 195, 246, 564, 900
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 3 cut(s) 20, 434, 644
Kzo9I GATC 5 cut(s) 19, 40, 198, 620, 683
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 673, 839
Lsp1109I GCAGC 8 cut(s) 20, 23, 174, 202, 488, 526, 529, 567
LweI GCATC 2 cut(s) 655, 886
MalI GATC 5 cut(s) 21, 42, 200, 622, 685
MboI GATC 5 cut(s) 19, 40, 198, 620, 683
MboII GAAGA 9 cut(s) 89, 92, 122, 262, 305, 461, 539, 814, 834
MhlI GDGCHC 2 cut(s) 762, 849
MluCI AATT 6 cut(s) 141, 166, 172, 275, 309, 426
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 270, 742
MseI TTAA 2 cut(s) 278, 533
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 3 cut(s) 680, 776, 872
MspR9I CCNGG 3 cut(s) 681, 726, 873
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 4 cut(s) 125, 219, 224, 485
NciI CCSGG 2 cut(s) 681, 873
NdeII GATC 5 cut(s) 19, 40, 198, 620, 683
NlaIII CATG 3 cut(s) 20, 434, 644
NlaIV GGNNCC 3 cut(s) 62, 205, 660
NruI TCGCGA 1 cut(s) 222
NspV TTCGAA 1 cut(s) 170
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 270, 742
PfeI GAWTC 4 cut(s) 97, 136, 178, 692
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 2 cut(s) 679, 724
PkrI GCNGC 9 cut(s) 10, 13, 189, 192, 436, 478, 516, 519, 557
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
PpuMI RGGWCCY 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 724
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 62, 205, 660
PspPI GGNCC 4 cut(s) 203, 368, 659, 860
PspPPI RGGWCCY 1 cut(s) 860
PstI CTGCAG 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 365
RruI TCGCGA 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 278, 533
SatI GCNGC 9 cut(s) 9, 12, 188, 191, 435, 477, 515, 518, 556
Sau3AI GATC 5 cut(s) 19, 40, 198, 620, 683
Sau96I GGNCC 4 cut(s) 203, 368, 659, 860
SchI GAGTC 1 cut(s) 711
ScrFI CCNGG 3 cut(s) 681, 726, 873
SduI GDGCHC 2 cut(s) 762, 849
SfaNI GCATC 2 cut(s) 655, 886
SfcI CTRYAG 2 cut(s) 188, 672
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 3 cut(s) 203, 659, 860
Sse9I AATT 6 cut(s) 141, 166, 172, 275, 309, 426
SsiI CCGC 2 cut(s) 435, 869
StyD4I CCNGG 3 cut(s) 679, 724, 871
StyI CCWWGG 1 cut(s) 849
TaaI ACNGT 2 cut(s) 339, 676
TaqI TCGA 4 cut(s) 164, 170, 258, 321
TaqII GACCGA 1 cut(s) 736
TasI AATT 6 cut(s) 141, 166, 172, 275, 309, 426
TauI GCSGC 1 cut(s) 437
TfiI GAWTC 4 cut(s) 97, 136, 178, 692
Tru1I TTAA 2 cut(s) 278, 533
Tru9I TTAA 2 cut(s) 278, 533
TscAI CASTG 1 cut(s) 250
TseI GCWGC 8 cut(s) 8, 11, 187, 190, 476, 514, 517, 555
TspDTI ATGAA 4 cut(s) 68, 368, 419, 623
TspGWI ACGGA 5 cut(s) 61, 171, 434, 622, 834
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 203, 659, 860
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 5 cut(s) 141, 166, 172, 309, 426
XmnI GAANNNNTTC 2 cut(s) 270, 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.