Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21152011 .. 21154395

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGCGGGTATGACTAATGGCGGTAGAGGTTCCGGCGGCGGTGGTGGTGGCGGCGGCAGGGAGTCAGGCGGTCGTGATTTGGAAATTAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTCGGACCTCCACCACCACCGATGATCAGAGTTAGAATCAAGTACGGTGCCGTCTACCATGAGATCAATATTAGTCCTCAAGCTTCTTTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGTATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTCCTCGATGTTTCGGGAGTGAAAGATAAATCTAAGATGGTGCTTATAGAAGACCCGCTTAGCCAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCTAAAGCGATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACGAGTTTCGGCTTTTGAGATGGTAACTAAAAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTGCTGATGAATGAGTTGATTAAGTTGGATGCGATTGTAGCTGAAGGAGATGTCAAGTTACAAAGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTGGAAACACTCGATGCCTTGAAGGTGAAAAACTCCATGGCTAATGGGCAACAGAAACAGTCAAGTACTGCTCAGAGACTTGCACCGATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGACATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCTAGGAATTCAGGGGAAGGACCATTTGTGTTAGATTCTTCTGCTAAATGGGAAACATTCGATCATCATCCCGTGACGCCATTGAGCTCGACTACTGCGAAAAATAACGCGATCCCGCCCAGGTTTAATTGGGAATTCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

342

Amino Acids

38.19

Weight (kDa)

9.24

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	161 - 237	1.9e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	992
AclWI	GGATC	3 cut(s)	164, 177, 988
AcsI	RAATTY	2 cut(s)	889, 1016
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	2 cut(s)	470, 959
AfaI	GTAC	2 cut(s)	218, 757
AfiI	CCNNNNNNNGG	2 cut(s)	44, 166
AgsI	TTSAA	4 cut(s)	500, 712, 782, 875
AjnI	CCWGG	2 cut(s)	130, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	5 cut(s)	257, 271, 322, 635, 969
AluI	AGCT	5 cut(s)	257, 271, 322, 635, 969
Alw21I	GWGCWC	1 cut(s)	971
Alw26I	GTCTC	2 cut(s)	760, 796
AlwI	GGATC	3 cut(s)	164, 177, 988
ApoI	RAATTY	2 cut(s)	889, 1016
Asp700I	GAANNNNTTC	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	884
AspS9I	GGNCC	3 cut(s)	179, 290, 902
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	682, 727
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	179, 290, 902
AvrII	CCTAGG	1 cut(s)	884
BamHI	GGATCC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	971
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	971
BccI	CCATC	2 cut(s)	388, 532
BceAI	ACGGC	2 cut(s)	57, 209
BciT130I	CCWGG	2 cut(s)	132, 1003
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	760, 796
BfaI	CTAG	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	658
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	3 cut(s)	76, 91, 94
BlnI	CCTAGG	1 cut(s)	884
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	3 cut(s)	77, 92, 95
BmcAI	AGTACT	1 cut(s)	757
Bme1390I	CCNGG	3 cut(s)	132, 161, 1003
Bme18I	GGWCC	3 cut(s)	179, 290, 902
BmgT120I	GGNCC	3 cut(s)	179, 290, 902
BmiI	GGNNCC	4 cut(s)	70, 171, 223, 882
BmrFI	CCNGG	3 cut(s)	132, 161, 1003
BmsI	GCATC	3 cut(s)	613, 654, 694
BpiI	GAAGAC	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	161
BsaBI	GATNNNNATC	2 cut(s)	168, 948
BsaHI	GRCGYC	2 cut(s)	470, 959
BsaJI	CCNNGG	3 cut(s)	726, 884, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 166
Bse1I	ACTGG	1 cut(s)	292
Bse8I	GATNNNNATC	2 cut(s)	168, 948
BseBI	CCWGG	2 cut(s)	132, 1003
BseDI	CCNNGG	3 cut(s)	726, 884, 1001
BseGI	GGATG	2 cut(s)	628, 949
BseJI	GATNNNNATC	2 cut(s)	168, 948
BseLI	CCNNNNNNNGG	2 cut(s)	44, 166
BseMII	CTCAG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	893
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	1 cut(s)	992
Bsh1285I	CGRYCG	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	971
BsiSI	CCGG	2 cut(s)	72, 161
BslI	CCNNNNNNNGG	2 cut(s)	44, 166
BsmAI	GTCTC	2 cut(s)	760, 796
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	971
Bsp143I	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
Bsp1720I	GCTNAGC	1 cut(s)	416
Bsp19I	CCATGG	1 cut(s)	726
BspCNI	CTCAG	1 cut(s)	775
BspFNI	CGCG	1 cut(s)	992
BspLI	GGNNCC	4 cut(s)	70, 171, 223, 882
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	3 cut(s)	164, 177, 988
BspT104I	TTCGAA	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	726, 884, 1001
BssMI	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
BssNI	GRCGYC	2 cut(s)	470, 959
BssT1I	CCWWGG	2 cut(s)	726, 884
Bst2UI	CCWGG	2 cut(s)	132, 1003
Bst4CI	ACNGT	4 cut(s)	221, 432, 586, 750
Bst6I	CTCTTC	3 cut(s)	668, 792, 870
BstACI	GRCGYC	2 cut(s)	470, 959
BstBI	TTCGAA	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	390, 416, 762
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	2 cut(s)	628, 949
BstFNI	CGCG	1 cut(s)	992
BstKTI	GATC	7 cut(s)	172, 201, 240, 316, 577, 946, 996
BstMAI	GTCTC	2 cut(s)	760, 796
BstMBI	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 632
BstNI	CCWGG	2 cut(s)	132, 1003
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	3 cut(s)	130, 159, 1001
BstUI	CGCG	1 cut(s)	992
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	169, 574
BstYI	RGATCY	2 cut(s)	169, 574
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	2 cut(s)	628, 949
BveI	ACCTGC	1 cut(s)	658
Cfr13I	GGNCC	3 cut(s)	179, 290, 902
CseI	GACGC	2 cut(s)	459, 967
CsiI	ACCWGGT	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	217, 756
CviAII	CATG	4 cut(s)	233, 727, 832, 838
CviQI	GTAC	2 cut(s)	217, 756
DdeI	CTNAG	3 cut(s)	390, 416, 762
DpnI	GATC	7 cut(s)	171, 200, 239, 315, 576, 945, 995
DpnII	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
Eam1104I	CTCTTC	3 cut(s)	668, 792, 870
EarI	CTCTTC	3 cut(s)	668, 792, 870
EciI	GGCGGA	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	726, 884
Eco24I	GRGCYC	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	483
Eco47I	GGWCC	3 cut(s)	179, 290, 902
Eco53kI	GAGCTC	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	969
EcoRI	GAATTC	2 cut(s)	889, 1016
EcoRII	CCWGG	2 cut(s)	130, 1001
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	726, 884
EcoT38I	GRGCYC	1 cut(s)	971
ErhI	CCWWGG	2 cut(s)	726, 884
FaeI	CATG	4 cut(s)	236, 730, 835, 841
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	4 cut(s)	232, 726, 831, 837
FauI	CCCGC	3 cut(s)	37, 420, 1005
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	76, 91, 94
FokI	GGATG	2 cut(s)	635, 936
FriOI	GRGCYC	1 cut(s)	971
Fsp4HI	GCNGC	3 cut(s)	76, 91, 94
FspBI	CTAG	1 cut(s)	885
GluI	GCNGC	3 cut(s)	76, 91, 94
HapII	CCGG	2 cut(s)	72, 161
HgaI	GACGC	2 cut(s)	459, 967
Hin1I	GRCGYC	2 cut(s)	470, 959
Hin1II	CATG	4 cut(s)	236, 730, 835, 841
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	5 cut(s)	101, 210, 347, 778, 917
HpaII	CCGG	2 cut(s)	72, 161
HphI	GGTGA	2 cut(s)	682, 727
Hpy166II	GTNNAC	2 cut(s)	229, 285
Hpy188I	TCNGA	7 cut(s)	39, 150, 179, 203, 318, 487, 765
Hpy188III	TCNNGA	4 cut(s)	113, 311, 372, 782
Hpy8I	GTNNAC	2 cut(s)	229, 285
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	346, 632, 706, 893
HpyCH4III	ACNGT	4 cut(s)	221, 432, 586, 750
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	667, 682, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 632
HpyF3I	CTNAG	3 cut(s)	390, 416, 762
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	2 cut(s)	470, 959
Hsp92II	CATG	4 cut(s)	236, 730, 835, 841
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
LmnI	GCTCC	2 cut(s)	268, 880
LweI	GCATC	3 cut(s)	613, 654, 694
MabI	ACCWGGT	1 cut(s)	130
MaeI	CTAG	1 cut(s)	885
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	5 cut(s)	155, 541, 580, 651, 955
MalI	GATC	7 cut(s)	171, 200, 239, 315, 576, 945, 995
MboI	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
MflI	RGATCY	2 cut(s)	169, 574
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	6 cut(s)	123, 593, 685, 889, 1009, 1016
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	3 cut(s)	62, 157, 600
MnlI	CCTC	8 cut(s)	59, 192, 261, 336, 371, 438, 548, 871
MroXI	GAANNNNTTC	1 cut(s)	356
MseI	TTAA	2 cut(s)	615, 1008
MslI	CAYNNNNRTG	2 cut(s)	792, 836
MspI	CCGG	2 cut(s)	72, 161
MspR9I	CCNGG	3 cut(s)	132, 161, 1003
MvaI	CCWGG	2 cut(s)	132, 1003
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	2 cut(s)	476, 632
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
NlaIII	CATG	4 cut(s)	236, 730, 835, 841
NlaIV	GGNNCC	4 cut(s)	70, 171, 223, 882
NmeAIII	GCCGAG	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	955
NspI	RCATGY	1 cut(s)	841
NspV	TTCGAA	1 cut(s)	350
PaqCI	CACCTGC	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	4 cut(s)	210, 347, 778, 917
PkrI	GCNGC	3 cut(s)	77, 92, 95
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	971
Psp6I	CCWGG	2 cut(s)	130, 1001
PspGI	CCWGG	2 cut(s)	130, 1001
PspN4I	GGNNCC	4 cut(s)	70, 171, 223, 882
PspPI	GGNCC	3 cut(s)	179, 290, 902
PsuI	RGATCY	2 cut(s)	169, 574
RsaI	GTAC	2 cut(s)	218, 757
RsaNI	GTAC	2 cut(s)	217, 756
RseI	CAYNNNNRTG	2 cut(s)	792, 836
SacI	GAGCTC	1 cut(s)	971
SaqAI	TTAA	2 cut(s)	615, 1008
SatI	GCNGC	3 cut(s)	76, 91, 94
Sau3AI	GATC	7 cut(s)	169, 198, 237, 313, 574, 943, 993
Sau96I	GGNCC	3 cut(s)	179, 290, 902
ScaI	AGTACT	1 cut(s)	757
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	3 cut(s)	132, 161, 1003
SduI	GDGCHC	1 cut(s)	971
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	613, 654, 694
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	3 cut(s)	179, 290, 902
SmiMI	CAYNNNNRTG	2 cut(s)	792, 836
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	6 cut(s)	123, 593, 685, 889, 1009, 1016
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	885
SstI	GAGCTC	1 cut(s)	971
StyD4I	CCNGG	3 cut(s)	130, 159, 1001
StyI	CCWWGG	2 cut(s)	726, 884
TaaI	ACNGT	4 cut(s)	221, 432, 586, 750
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	6 cut(s)	350, 363, 591, 702, 942, 971
TasI	AATT	6 cut(s)	123, 593, 685, 889, 1009, 1016
TatI	WGTACW	1 cut(s)	755
TauI	GCSGC	3 cut(s)	78, 93, 96
TfiI	GAWTC	4 cut(s)	210, 347, 778, 917
Tru1I	TTAA	2 cut(s)	615, 1008
Tru9I	TTAA	2 cut(s)	615, 1008
TseFI	GTSAC	1 cut(s)	955
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	4 cut(s)	20, 293, 617, 810
VpaK11BI	GGWCC	3 cut(s)	179, 290, 902
XapI	RAATTY	2 cut(s)	889, 1016
XceI	RCATGY	1 cut(s)	841
XmaJI	CCTAGG	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	1 cut(s)	885
ZrmI	AGTACT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.