Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257091.1

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

gggacttgaagaaaatgctggtcggaccgacgggtttgcaccacctggatatgaagctgttattcaaagacaaggagagggattcgaaggcgtttcttgacatttccggagtgaaagaccggtcaaagatggtgtgtgttgaagaccctcttagccaagaaaagcggtatcttgagatgaggcgcaatgccaaaatggagaaggcatcaaagtctatctccgaaatcagcttggaagtggaccggctcgccggtcaggtgtctgctcttgaaacaattattactaaaggtgcaaaagttgcagaacaggatgtgcttaaagtgattgagcatttgatgaatcagttgcttaaattagacggaattatgggggatggagatgtgaagttgcaaaggaaaatgcaggtgaaaagagttcagaagtatgttgaaactctggatgttttgaaagttaaaaactccatgcctagtagcaatggggatcatattccaaagcaagctcatagtcatagacaaaatcattccaacggcaatgggcgtatcctaacaccaattcaagagcagcaaccaaggaattca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

9.52

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	573
AgeI	ACCGGT	1 cut(s)	119
AgsI	TTSAA	7 cut(s)	9, 66, 142, 271, 430, 447, 556
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	57, 230, 499
AluI	AGCT	3 cut(s)	57, 230, 499
AlwI	GGATC	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	561
ApoI	RAATTY	1 cut(s)	573
AsiGI	ACCGGT	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	25, 240
AsuHPI	GGTGA	1 cut(s)	417
AsuII	TTCGAA	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	25, 240
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	2 cut(s)	123, 367
BceAI	ACGGC	1 cut(s)	543
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	550
BfaI	CTAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	550
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	25, 240
BmgT120I	GGNCC	2 cut(s)	25, 240
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	2 cut(s)	106, 119
Bse118I	RCCGGY	3 cut(s)	119, 242, 250
Bse3DI	GCAATG	3 cut(s)	192, 480, 537
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	3 cut(s)	315, 378, 444
BseMI	GCAATG	3 cut(s)	192, 480, 537
BseXI	GCAGC	1 cut(s)	573
BshTI	ACCGGT	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	107, 120, 243, 251
BslFI	GGGAC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	192, 480, 537
BsrFI	RCCGGY	3 cut(s)	119, 242, 250
BssAI	RCCGGY	3 cut(s)	119, 242, 250
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	568
Bst2UI	CCWGG	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	248, 497
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	315, 378, 444
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	550
BtsCI	GGATG	3 cut(s)	315, 378, 444
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	248, 497
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	3 cut(s)	119, 242, 250
Cfr13I	GGNCC	2 cut(s)	25, 240
CpoI	CGGWCCG	1 cut(s)	25
CspAI	ACCGGT	1 cut(s)	119
CspI	CGGWCCG	1 cut(s)	25
CviAII	CATG	1 cut(s)	462
CviJI	RGCY	5 cut(s)	57, 155, 230, 246, 499
CviKI_1	RGCY	5 cut(s)	57, 155, 230, 246, 499
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	25, 240
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	1 cut(s)	465
FaiI	YATR	7 cut(s)	52, 367, 425, 463, 485, 503, 509
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	3 cut(s)	322, 385, 451
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	562
HapII	CCGG	4 cut(s)	107, 120, 243, 251
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	82, 339
HpaII	CCGG	4 cut(s)	107, 120, 243, 251
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	25, 222, 419
Hpy188III	TCNNGA	6 cut(s)	97, 107, 172, 268, 436, 556
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	81, 195
HpyCH4V	TGCA	5 cut(s)	39, 292, 301, 390, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	480
Lsp1109I	GCAGC	1 cut(s)	573
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	467
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	2 cut(s)	21, 154
MluCI	AATT	5 cut(s)	275, 352, 362, 551, 573
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	3 cut(s)	71, 158, 173
MroI	TCCGGA	1 cut(s)	106
MseI	TTAA	3 cut(s)	317, 350, 452
MspI	CCGG	4 cut(s)	107, 120, 243, 251
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	82, 339
PinAI	ACCGGT	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	25, 240
Rsr2I	CGGWCCG	1 cut(s)	25
RsrII	CGGWCCG	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	317, 350, 452
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	2 cut(s)	25, 240
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	7 cut(s)	47, 59, 232, 260, 291, 407, 501
SfaNI	GCATC	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	2 cut(s)	25, 240
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	5 cut(s)	275, 352, 362, 551, 573
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	568
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	5 cut(s)	275, 352, 362, 551, 573
TfiI	GAWTC	2 cut(s)	82, 339
Tru1I	TTAA	3 cut(s)	317, 350, 452
Tru9I	TTAA	3 cut(s)	317, 350, 452
TseI	GCWGC	1 cut(s)	561
TspDTI	ATGAA	2 cut(s)	67, 352
TspGWI	ACGGA	1 cut(s)	374
VpaK11BI	GGWCC	2 cut(s)	25, 240
XapI	RAATTY	1 cut(s)	573
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.