Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

28442006 .. 28444349

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G290300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGATGAGAATGAAGACGAAGACAACAGGGGTGGCACTGTCAGAGTTGAATGGAAGTTCTGGCAGTGGCGGAAATGAGTCGGGGCCAGCCGAGTGGGAGCTTAGACCAGGAGGAATGTTGGTTCAGAAACGAAATCCAGACTCTGATCGGAACATAGCCCCTCCACCGACAATTAGAGTTAGGGTCAAATATGGGTCCATTTACCATGAAATCAATATTAGCGCTCAATCTTCCTTTGGGGACTTGAAGAAAATGTTGGCTGGACCGACGGGTTTGCATCATCAAGATCAGAAGCTGATATTCAAAGACAAGGAGAGGGACTCAAAGGCTTTTCTTGACATGTCAGGGGTGAAGGACCGATCGAAGATGGTGTTAGTTGAGGACCCAATTAGCCAAGAAAAGCGATATCTCGAGATGCGACGAAATGCAAAGATGGAGAAGGCTTCAAAGTCCATCTCTGAAATCAGCTTGGAAGTAGATAGGCTCGCTGGCCAGGTGTCGGCTCTTGAATCAATAATCACCAAAGGTAAAAAAGTTGCAGAACAAGATGTGCTTACTCTGATTGAGCAACTGATGAACCAATTGCTTAAACTAGACGGAATCATGGGCGATGGAGATGTGAAATTGCAGAGGAAAATGCAGGTGAGAAGAGTGCAGAAGTGTGTTGAAACTCTGGATATATTGAAAGCTAAAAACTCCACGCCTAGCAGCAATGGAGGTCAGACTCCAAAGCAAGTTCAGCAGAAGCATTCTAATGGGCATAGACATGGAGCAATCCATCAACAGCCTCAAAGTCATTACAGTGGAAATGGGAATTTGCTAACACCAATTCAAGAGCATCAACCAAGGCATTCGGTTGGATATTCACCTTTACATCAGCAAGGGCAACAACAACCATCAAGGCATTCAGCTTCAGGGCCAGTAGTTGTCACCACACAGTGGGAGACATTCGATTCTGCCCCGGCATTGATCCCAACCTCTTCTACATCCAAATCGGCCTCAGCCACCAATCATTCTGGCTATCCTAAGTTTAATTGGGAATCGTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

351

Amino Acids

38.71

Weight (kDa)

9.55

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	939
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	964
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	814
AcuI	CTGAAG	1 cut(s)	897
AdeI	CACNNNGTG	1 cut(s)	939
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	499, 939
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	8 cut(s)	49, 247, 304, 447, 509, 668, 685, 833
AjnI	CCWGG	2 cut(s)	106, 492
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	100, 295, 468, 689, 911
AluI	AGCT	5 cut(s)	100, 295, 468, 689, 911
Alw26I	GTCTC	1 cut(s)	938
AlwI	GGATC	1 cut(s)	964
AlwNI	CAGNNNCTG	2 cut(s)	143, 295
Ama87I	CYCGRG	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	4 cut(s)	83, 490, 917, 996
ApeKI	GCWGC	1 cut(s)	708
ApoI	RAATTY	1 cut(s)	814
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	6 cut(s)	83, 195, 263, 355, 382, 917
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	5 cut(s)	361, 511, 655, 858, 922
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	4 cut(s)	195, 263, 355, 382
BalI	TGGCCA	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	20, 26
BbvCI	CCTCAGC	1 cut(s)	1000
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	6 cut(s)	361, 427, 461, 605, 786, 904
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	2 cut(s)	108, 494
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	1 cut(s)	938
BfaI	CTAG	2 cut(s)	593, 705
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	1 cut(s)	709
BlsI	GCNGC	1 cut(s)	710
Bme1390I	CCNGG	3 cut(s)	108, 494, 962
Bme18I	GGWCC	4 cut(s)	195, 263, 355, 382
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	6 cut(s)	83, 195, 263, 355, 382, 917
BmiI	GGNNCC	3 cut(s)	84, 196, 384
BmrFI	CCNGG	3 cut(s)	108, 494, 962
BmsI	GCATC	3 cut(s)	286, 405, 847
BpiI	GAAGAC	2 cut(s)	20, 26
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu10I	CCTNAGC	1 cut(s)	1000
BpuMI	CCSGG	1 cut(s)	962
BsaJI	CCNNGG	2 cut(s)	845, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 939
Bse1I	ACTGG	1 cut(s)	920
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	2 cut(s)	108, 494
BseDI	CCNNGG	2 cut(s)	845, 960
BseGI	GGATG	1 cut(s)	986
BseLI	CCNNNNNNNGG	2 cut(s)	499, 939
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	1 cut(s)	1014
BseNI	ACTGG	1 cut(s)	920
BseXI	GCAGC	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	4 cut(s)	85, 492, 919, 998
BsiEI	CGRYCG	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	962
BslFI	GGGAC	2 cut(s)	254, 332
BslI	CCNNNNNNNGG	2 cut(s)	499, 939
BsmAI	GTCTC	1 cut(s)	938
BsmFI	GGGAC	2 cut(s)	254, 332
BsmI	GAATGC	3 cut(s)	748, 850, 904
BsnI	GGCC	4 cut(s)	85, 492, 919, 998
BsoBI	CYCGRG	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	145, 286, 359, 969
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	4 cut(s)	85, 492, 919, 998
BspCNI	CTCAG	1 cut(s)	1013
BspLI	GGNNCC	3 cut(s)	84, 196, 384
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	964
BsrDI	GCAATG	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	920
BssECI	CCNNGG	2 cut(s)	845, 960
BssMI	GATC	4 cut(s)	145, 286, 359, 969
BssT1I	CCWWGG	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	108, 494
Bst4CI	ACNGT	3 cut(s)	39, 803, 939
Bst6I	CTCTTC	2 cut(s)	643, 985
BstC8I	GCNNGC	3 cut(s)	87, 486, 490
BstDEI	CTNAG	3 cut(s)	101, 1000, 1026
BstF5I	GGATG	1 cut(s)	986
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	4 cut(s)	148, 289, 362, 972
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	4 cut(s)	145, 286, 359, 969
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNI	CCWGG	2 cut(s)	108, 494
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	3 cut(s)	106, 492, 960
BstV1I	GCAGC	1 cut(s)	720
BstV2I	GAAGAC	2 cut(s)	20, 26
BstXI	CCANNNNNNTGG	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	85, 492, 919, 998
BtgZI	GCGATG	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	986
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	4 cut(s)	35, 70, 808, 944
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	87, 486, 490
CaiI	CAGNNNCTG	2 cut(s)	143, 295
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	6 cut(s)	83, 195, 263, 355, 382, 917
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	4 cut(s)	206, 340, 604, 767
DdeI	CTNAG	3 cut(s)	101, 1000, 1026
DpnI	GATC	4 cut(s)	147, 288, 361, 971
DpnII	GATC	4 cut(s)	145, 286, 359, 969
DraIII	CACNNNGTG	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	643, 985
EarI	CTCTTC	2 cut(s)	643, 985
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	845
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	4 cut(s)	195, 263, 355, 382
Eco47III	AGCGCT	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	106, 492
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	845
FaeI	CATG	4 cut(s)	209, 343, 607, 770
FaiI	YATR	8 cut(s)	155, 192, 207, 341, 605, 680, 762, 768
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	2 cut(s)	254, 332
FatI	CATG	4 cut(s)	205, 339, 603, 766
Fnu4HI	GCNGC	1 cut(s)	709
FokI	GGATG	1 cut(s)	973
Fsp4HI	GCNGC	1 cut(s)	709
FspBI	CTAG	2 cut(s)	593, 705
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	709
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	85, 492, 919, 998
HapII	CCGG	1 cut(s)	962
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	4 cut(s)	209, 343, 607, 770
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	8 cut(s)	77, 140, 320, 509, 600, 724, 953, 1040
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	5 cut(s)	361, 511, 655, 858, 922
Hpy188I	TCNGA	8 cut(s)	43, 126, 145, 150, 291, 460, 561, 723
Hpy188III	TCNNGA	8 cut(s)	137, 284, 335, 410, 412, 506, 674, 833
Hpy99I	CGWCG	2 cut(s)	271, 423
HpyAV	CCTTC	2 cut(s)	346, 433
HpyCH4III	ACNGT	3 cut(s)	39, 803, 939
HpyCH4V	TGCA	6 cut(s)	277, 428, 539, 628, 640, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	3 cut(s)	101, 1000, 1026
Hsp92II	CATG	4 cut(s)	209, 343, 607, 770
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	145, 286, 359, 969
LmnI	GCTCC	2 cut(s)	97, 770
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	3 cut(s)	286, 405, 847
MaeI	CTAG	2 cut(s)	593, 705
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	4 cut(s)	147, 288, 361, 971
MboI	GATC	4 cut(s)	145, 286, 359, 969
MboII	GAAGA	7 cut(s)	25, 31, 222, 259, 376, 660, 972
MfeI	CAATTG	1 cut(s)	581
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	7 cut(s)	171, 387, 581, 623, 814, 828, 1033
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	4 cut(s)	86, 134, 314, 718
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	9 cut(s)	104, 171, 309, 373, 624, 710, 798, 988, 1009
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	2 cut(s)	588, 1032
MslI	CAYNNNNRTG	3 cut(s)	753, 765, 801
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	3 cut(s)	108, 494, 962
MunI	CAATTG	1 cut(s)	581
Mva1269I	GAATGC	3 cut(s)	748, 850, 904
MvaI	CCWGG	2 cut(s)	108, 494
MwoI	GCNNNNNNNGC	1 cut(s)	739
NciI	CCSGG	1 cut(s)	962
NdeII	GATC	4 cut(s)	145, 286, 359, 969
NlaIII	CATG	4 cut(s)	209, 343, 607, 770
NlaIV	GGNNCC	3 cut(s)	84, 196, 384
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	1 cut(s)	928
NspI	RCATGY	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	631
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	3 cut(s)	748, 850, 904
PfeI	GAWTC	4 cut(s)	509, 600, 953, 1040
PflMI	CCANNNNNTGG	1 cut(s)	939
PkrI	GCNGC	1 cut(s)	710
Ple19I	CGATCG	1 cut(s)	362
PleI	GAGTC	4 cut(s)	85, 134, 314, 718
PpsI	GAGTC	4 cut(s)	85, 134, 314, 718
PpuMI	RGGWCCY	1 cut(s)	382
PscI	ACATGT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	106, 492
PspGI	CCWGG	2 cut(s)	106, 492
PspN4I	GGNNCC	3 cut(s)	84, 196, 384
PspPI	GGNCC	6 cut(s)	83, 195, 263, 355, 382, 917
PspPPI	RGGWCCY	1 cut(s)	382
PstNI	CAGNNNCTG	2 cut(s)	143, 295
PvuI	CGATCG	1 cut(s)	362
RseI	CAYNNNNRTG	3 cut(s)	753, 765, 801
SaqAI	TTAA	2 cut(s)	588, 1032
SatI	GCNGC	1 cut(s)	709
Sau3AI	GATC	4 cut(s)	145, 286, 359, 969
Sau96I	GGNCC	6 cut(s)	83, 195, 263, 355, 382, 917
SchI	GAGTC	4 cut(s)	86, 134, 314, 718
ScrFI	CCNGG	3 cut(s)	108, 494, 962
SfaNI	GCATC	3 cut(s)	286, 405, 847
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	4 cut(s)	195, 263, 355, 382
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	3 cut(s)	753, 765, 801
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	7 cut(s)	171, 387, 581, 623, 814, 828, 1033
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	593, 705
StyD4I	CCNGG	3 cut(s)	106, 492, 960
StyI	CCWWGG	1 cut(s)	845
TaaI	ACNGT	3 cut(s)	39, 803, 939
TaqI	TCGA	4 cut(s)	362, 411, 951, 1047
TaqII	GACCGA	2 cut(s)	280, 372
TasI	AATT	7 cut(s)	171, 387, 581, 623, 814, 828, 1033
TfiI	GAWTC	4 cut(s)	509, 600, 953, 1040
Tru1I	TTAA	2 cut(s)	588, 1032
Tru9I	TTAA	2 cut(s)	588, 1032
TscAI	CASTG	4 cut(s)	42, 70, 808, 944
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	3 cut(s)	26, 222, 590
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	4 cut(s)	42, 70, 808, 944
Van91I	CCANNNNNTGG	1 cut(s)	939
VpaK11BI	GGWCC	4 cut(s)	195, 263, 355, 382
XapI	RAATTY	1 cut(s)	814
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	410
XspI	CTAG	2 cut(s)	593, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.