Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

50667093 .. 50667725

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0397800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTCTTGAAGTCTTTGAAAGAGATGAGCCAGAATTCGATCCCCATCTCCATCAACGGGACCTTGATAAACAGAGCCTAGAGCTTAAGAACCTTAAAGAATTGGAAGAGATACATCAGAAGCTTGAGAAACAGAAGCAAGAGCTTGAGAAGAAGGTCCGCGCACAAAACCAAAAGGCTCAACAATATGCTGCAGCTGCAGAGACCAAGAAGGCTATACAAGTCATTCCTAAACTACTTGACCTATATGCCGTGCATAAATCTAAGAAGAAAAAGGGGCGATTACAAAGAAAAATCGACAAGCTTGAAATCGATGAATTCGCCGTTGATATTCAGATTACACTACTTGAAGGACGTGCTAAAGTTGAGGAAAGGCCTGTTTATGATGATGAATCACCCATAAAGGAAAAATCTGCAGTGAACAAGTCCCTAGAAAAAGACATGGCTATGAACAATGATGAATTGAGGGAAACAATACATGAGATCAATAAGGATATTAAGTACATGCAACTTAAATCCTTGGCAAAATTAGGGAGCTATTGTCAGCACATGTTGAAGAAGCCGTTCATCTCGATGAAGAATAATCTATGCAAAGGGTTAAGAAGTAACAGCAAAGGGTTAAGAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

210

Amino Acids

24.58

Weight (kDa)

9.06

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	35, 317
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	5 cut(s)	11, 20, 308, 350, 556
AjiI	CACGTC	1 cut(s)	356
AluBI	AGCT	6 cut(s)	85, 124, 145, 197, 304, 537
AluI	AGCT	6 cut(s)	85, 124, 145, 197, 304, 537
Alw26I	GTCTC	2 cut(s)	9, 197
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	191, 194, 197
ApoI	RAATTY	2 cut(s)	35, 317
Asp700I	GAANNNNTTC	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	61, 157
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	61, 157
BbvI	GCAGC	3 cut(s)	178, 184, 206
BccI	CCATC	2 cut(s)	54, 60
BceAI	ACGGC	3 cut(s)	236, 308, 547
BcoDI	GTCTC	2 cut(s)	9, 197
BfaI	CTAG	2 cut(s)	80, 431
BfmI	CTRYAG	3 cut(s)	192, 198, 414
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	192, 195, 198
BlsI	GCNGC	3 cut(s)	193, 196, 199
Bme18I	GGWCC	2 cut(s)	61, 157
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	61, 157
BmiI	GGNNCC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	146, 167
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	519
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	178, 184, 206
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	312
BslFI	GGGAC	2 cut(s)	74, 412
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	9, 197
BsmFI	GGGAC	2 cut(s)	74, 412
BsnI	GGCC	1 cut(s)	376
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	40, 483
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	62
BspMAI	CTGCAG	3 cut(s)	196, 202, 418
BspPI	GGATC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	2 cut(s)	40, 483
BssT1I	CCWWGG	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	264
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	43, 486
BstMAI	GTCTC	2 cut(s)	9, 197
BstMBI	GATC	2 cut(s)	40, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	508, 553
BstSFI	CTRYAG	3 cut(s)	192, 198, 414
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	178, 184, 206
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	61, 157
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	4 cut(s)	442, 479, 505, 550
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	42, 485
DpnII	GATC	2 cut(s)	40, 483
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	519
Eco147I	AGGCCT	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	61, 157
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRI	GAATTC	2 cut(s)	35, 317
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	4 cut(s)	445, 482, 508, 553
FaqI	GGGAC	2 cut(s)	74, 412
FatI	CATG	4 cut(s)	441, 478, 504, 549
Fnu4HI	GCNGC	3 cut(s)	192, 195, 198
Fsp4HI	GCNGC	3 cut(s)	192, 195, 198
FspBI	CTAG	2 cut(s)	80, 431
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	192, 195, 198
HaeIII	GGCC	1 cut(s)	376
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	445, 482, 508, 553
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	2 cut(s)	122, 302
HinfI	GANTC	1 cut(s)	392
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	120, 336
Hpy188III	TCNNGA	2 cut(s)	8, 571
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	148, 205, 344
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	194, 200, 256, 416, 508, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	445, 482, 508, 553
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	40, 483
LmnI	GCTCC	1 cut(s)	534
LpnPI	CCDG	2 cut(s)	45, 390
Lsp1109I	GCAGC	3 cut(s)	178, 184, 206
MaeI	CTAG	2 cut(s)	80, 431
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	605
MalI	GATC	2 cut(s)	42, 485
MboI	GATC	2 cut(s)	40, 483
MboII	GAAGA	5 cut(s)	119, 163, 280, 568, 589
MluCI	AATT	5 cut(s)	35, 101, 317, 461, 527
MnlI	CCTC	2 cut(s)	361, 459
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	6 cut(s)	87, 96, 498, 513, 599, 620
MslI	CAYNNNNRTG	2 cut(s)	446, 572
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	40, 483
NlaIII	CATG	4 cut(s)	445, 482, 508, 553
NlaIV	GGNNCC	1 cut(s)	62
NspI	RCATGY	2 cut(s)	508, 553
PceI	AGGCCT	1 cut(s)	376
PciI	ACATGT	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	3 cut(s)	193, 196, 199
PpuMI	RGGWCCY	1 cut(s)	61
PscI	ACATGT	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	61, 157
PspPPI	RGGWCCY	1 cut(s)	61
PstI	CTGCAG	3 cut(s)	196, 202, 418
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	2 cut(s)	446, 572
SaqAI	TTAA	6 cut(s)	87, 96, 498, 513, 599, 620
SatI	GCNGC	3 cut(s)	192, 195, 198
Sau3AI	GATC	2 cut(s)	40, 483
Sau96I	GGNCC	2 cut(s)	61, 157
SfcI	CTRYAG	3 cut(s)	192, 198, 414
SinI	GGWCC	2 cut(s)	61, 157
SmiMI	CAYNNNNRTG	2 cut(s)	446, 572
SmlI	CTYRAG	3 cut(s)	86, 125, 146
SmoI	CTYRAG	3 cut(s)	86, 125, 146
Sse9I	AATT	5 cut(s)	35, 101, 317, 461, 527
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	80, 431
StuI	AGGCCT	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	519
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	4 cut(s)	39, 297, 312, 572
TasI	AATT	5 cut(s)	35, 101, 317, 461, 527
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	6 cut(s)	87, 96, 498, 513, 599, 620
Tru9I	TTAA	6 cut(s)	87, 96, 498, 513, 599, 620
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	3 cut(s)	191, 194, 197
TspDTI	ATGAA	6 cut(s)	330, 405, 464, 474, 556, 590
TspRI	CASTG	1 cut(s)	423
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	61, 157
XapI	RAATTY	2 cut(s)	35, 317
XceI	RCATGY	2 cut(s)	508, 553
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	2 cut(s)	80, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.