Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Forward (+)

24940203 .. 24942003

Gene Structure 1801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATGAAAATGAGTATCGGAACAACAACTTCCGGCGACGGTGAAATGGAGCTCCGACCTGGAGGAATGGTTGTACAGAAAAGGACGGATCATAGCTCAAGCGTGCCACGTGGCATTCGGGTTCGGGTCAAATACGGGTCGGTCCATCACGAGATCAGTATCAACTCTCAATCTACTTTCGGGGAATTAAAGAAGATATTGTCTGGTGCGACAGGAGTTCATCATCAAGACATGCAGATTATATACAAAGACAAAGAAAGAGACTCAAAGATGTTTCTTGATCTTTCTGGTGTCAAAGATCGTTCGAAACTTATTCTTATAGAAGATCCCATTTCTCAGGAGAAACGTCTCCTTGAGTTGAGGAAAATCGCCACCAAAGAGAAATCATCTAAAGCAATCTCTGATATTAGTTTCCAAGTCGAAAGACTCGCCGGACAACTGTCGGCGTTTGATACAGTGATTGGTAAAGGAGGGAAAGTTGAAGAGAAGAATCTTGAGAATTTGATGGAGATGTTGATGAATCAATTGGTCAAGCTCGATGCCATCTCAGGTGATGGAGACGTTAAATTGAAGAAGAAGATGCAGAATCTAATGATTCGATTTACAAATTGTTGGAAGGAGGAAAGATTACACAAGTATGTTGAGGCTCTCGACTTGTTGAAGATCAAGAACTCAAGGCAACCGCAAACGAAACCAAAGCCGCAATACAAGGAACGGGAAATGCTGACATTTTACGAGGAGGCGTCAAGGAAACCGACGGCCTCCTCATCAAGTCCTCCGGTGATCATAACAACAAGATGGGAAACGTTTGATTCTAGTTCAGCCTCCACGGCAACCCTACAACCCGTTAGACCGGTTCACCCAAAATTTAAATGGGAATTATTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

296

Amino Acids

33.67

Weight (kDa)

9.56

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	133 - 196	1.3e-10	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	683, 701
AclI	AACGTT	1 cut(s)	806
AclWI	GGATC	2 cut(s)	96, 320
AcsI	RAATTY	2 cut(s)	499, 866
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	743
AfaI	GTAC	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	853
AgsI	TTSAA	4 cut(s)	482, 571, 661, 886
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	3 cut(s)	52, 96, 535
AluI	AGCT	3 cut(s)	52, 96, 535
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	3 cut(s)	255, 353, 552
AlwI	GGATC	2 cut(s)	96, 320
AoxI	GGCC	1 cut(s)	759
ApoI	RAATTY	2 cut(s)	499, 866
AsiGI	ACCGGT	1 cut(s)	853
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	53, 563, 793, 851
AsuII	TTCGAA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	5 cut(s)	153, 499, 548, 551, 792
BceAI	ACGGC	2 cut(s)	774, 846
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	3 cut(s)	255, 353, 552
BfaI	CTAG	1 cut(s)	816
BglI	GCCNNNNNGGC	1 cut(s)	830
BisI	GCNGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	702
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	529, 570
BoxI	GACNNNNGTC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	4 cut(s)	82, 374, 515, 658
BsaAI	YACGTR	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	828
BsaWI	WCCGGW	2 cut(s)	778, 853
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 462, 492
Bse118I	RCCGGY	1 cut(s)	853
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	828
BseJI	GATNNNNATC	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	350, 561
BseRI	GAGGAG	2 cut(s)	752, 754
BshFI	GGCC	1 cut(s)	761
BshTI	ACCGGT	1 cut(s)	853
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	4 cut(s)	33, 432, 779, 854
BsmAI	GTCTC	3 cut(s)	255, 353, 552
BsmBI	CGTCTC	2 cut(s)	353, 552
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	761
Bsp119I	TTCGAA	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
BspACI	CCGC	2 cut(s)	683, 701
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	2 cut(s)	349, 560
BspPI	GGATC	2 cut(s)	96, 320
BspT104I	TTCGAA	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	853
BsrGI	TGTACA	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
BssNI	GRCGYC	1 cut(s)	743
BssSI	CACGAG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	41, 441, 457
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	336, 547
BstDSI	CCRYGG	1 cut(s)	828
BstKTI	GATC	7 cut(s)	91, 156, 283, 301, 328, 666, 786
BstMAI	GTCTC	3 cut(s)	255, 353, 552
BstMBI	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	830
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	235
BstPAI	GACNNNNGTC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	828
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	104
Cfr10I	RCCGGY	1 cut(s)	853
Cfr13I	GGNCC	1 cut(s)	142
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	1 cut(s)	74
CspAI	ACCGGT	1 cut(s)	853
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	52, 96, 535, 647, 700, 761, 824
CviKI_1	RGCY	7 cut(s)	52, 96, 535, 647, 700, 761, 824
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	336, 547
DpnI	GATC	7 cut(s)	90, 155, 282, 300, 327, 665, 785
DpnII	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
DraI	TTTAAA	1 cut(s)	871
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	353, 552
FaeI	CATG	1 cut(s)	235
FaiI	YATR	7 cut(s)	93, 233, 242, 244, 320, 639, 788
FatI	CATG	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	783
Fnu4HI	GCNGC	1 cut(s)	701
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	1 cut(s)	816
GluI	GCNGC	1 cut(s)	701
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	4 cut(s)	33, 432, 779, 854
HgaI	GACGC	1 cut(s)	732
Hin1I	GRCGYC	1 cut(s)	743
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	7 cut(s)	263, 426, 490, 520, 586, 595, 812
HpaII	CCGG	4 cut(s)	33, 432, 779, 854
HphI	GGTGA	4 cut(s)	53, 563, 793, 851
Hpy166II	GTNNAC	1 cut(s)	859
Hpy188I	TCNGA	3 cut(s)	20, 56, 403
Hpy188III	TCNNGA	7 cut(s)	149, 227, 278, 338, 494, 650, 667
Hpy8I	GTNNAC	1 cut(s)	859
Hpy99I	CGWCG	2 cut(s)	41, 760
HpyAV	CCTTC	1 cut(s)	610
HpyCH4III	ACNGT	3 cut(s)	41, 441, 457
HpyCH4IV	ACGT	4 cut(s)	109, 346, 561, 806
HpyCH4V	TGCA	2 cut(s)	235, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	830
HpyF3I	CTNAG	2 cut(s)	336, 547
HpySE526I	ACGT	4 cut(s)	109, 346, 561, 806
Hsp92I	GRCGYC	1 cut(s)	743
Hsp92II	CATG	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
LmnI	GCTCC	2 cut(s)	49, 57
LweI	GCATC	2 cut(s)	529, 570
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	4 cut(s)	109, 346, 561, 806
MalI	GATC	7 cut(s)	90, 155, 282, 300, 327, 665, 785
MboI	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
MboII	GAAGA	8 cut(s)	205, 335, 494, 499, 583, 586, 589, 673
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	8 cut(s)	185, 499, 524, 566, 607, 866, 878, 886
MlyI	GAGTC	2 cut(s)	257, 420
MmeI	TCCRAC	2 cut(s)	79, 593
MseI	TTAA	4 cut(s)	188, 564, 870, 889
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	4 cut(s)	33, 432, 779, 854
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	830
NdeII	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
NlaIII	CATG	1 cut(s)	235
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	305
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	490, 520, 586, 595, 812
PinAI	ACCGGT	1 cut(s)	853
PkrI	GCNGC	1 cut(s)	702
PleI	GAGTC	2 cut(s)	257, 420
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	2 cut(s)	257, 420
Ppu21I	YACGTR	1 cut(s)	110
PshAI	GACNNNNGTC	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	4 cut(s)	188, 564, 870, 889
SatI	GCNGC	1 cut(s)	701
Sau3AI	GATC	7 cut(s)	88, 153, 280, 298, 325, 663, 783
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	257, 420
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	9 cut(s)	54, 61, 98, 112, 349, 537, 553, 564, 809
SfaNI	GCATC	2 cut(s)	529, 570
SfuI	TTCGAA	1 cut(s)	305
SinI	GGWCC	1 cut(s)	142
SmiI	ATTTAAAT	1 cut(s)	871
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	4 cut(s)	97, 353, 494, 673
SmoI	CTYRAG	4 cut(s)	97, 353, 494, 673
Sse9I	AATT	8 cut(s)	185, 499, 524, 566, 607, 866, 878, 886
SsiI	CCGC	2 cut(s)	683, 701
SspMI	CTAG	1 cut(s)	816
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	58
SwaI	ATTTAAAT	1 cut(s)	871
TaaI	ACNGT	3 cut(s)	41, 441, 457
TaiI	ACGT	4 cut(s)	112, 349, 564, 809
TaqI	TCGA	5 cut(s)	305, 420, 537, 598, 651
TaqII	GACCGA	1 cut(s)	130
TasI	AATT	8 cut(s)	185, 499, 524, 566, 607, 866, 878, 886
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	5 cut(s)	490, 520, 586, 595, 812
Tru1I	TTAA	4 cut(s)	188, 564, 870, 889
Tru9I	TTAA	4 cut(s)	188, 564, 870, 889
TscAI	CASTG	1 cut(s)	462
TspDTI	ATGAA	3 cut(s)	20, 209, 533
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	2 cut(s)	499, 866
XceI	RCATGY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XspI	CTAG	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.