Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

21434477 .. 21436679

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGATGAGAATGAAGAACAAGACGAGTTCAGGTGTGGAGGTGCCGTTCTCTAGTATGAATGGAAGTTCGGGGGCAGCAGAGTCTGGACCGGCCGGGGAGTGGGAGGTCAGGCCAGGAGGAATGTTGGTTCAGAAACGGAATCCGGACTCTGATCGGAACGTGGCGCCTCCGCCGACAATTCGAGTGAGGGTCAAGCACGGGTCTGTGTACCATGAAATCAGTATTAGCGCGCAAGCTTCCTTTGGGGAGTTGAAGAAAATGCTGGTTGGACCGACGGGTCTACACCACCAGGATCAGAAGCTGATATTCAAAGATAAGGAGAGGGATTCCAAAGCCTTTCTTGACATTTCCGGGGTGAAAGACCGATCAAAAATTGTGTGTGTTGAAGACCCTCTTAGCCAAGAAAAGAGGTATATTGAGATGAGGCGCAATGCCAAGATGGAGAAGGCATCAAAGTCTATCTCGGAGATCAGCTTGGAAGTAGACCGGCTCGCTGGTCAGGTGTCTGCTCTTGAAACAATTATTACTAAAGGTGCAAAAGTTGCAGAACAAGATGTGCTTAAAGTGATTGAGCAGCTGATGAATCAGTTGCTTAAATTAGACGGAATTATGGGGGATGGAGATGTGAAATTGCAGAGGAAAATGCAGGTGAAAAGAGTTCAGAAGTATGTTGAAACTCTGGATGTATTGAAAATAAAAAACTCCATGCCTAGTAGCAATGGAGGTCATATTCCGAAGCAAGCTCATAGTCATAGACAAAATCATTCCAATGGCAATGGGCGTATCCTAACACCAATTCAAGAGCACCAACCAAGGCATTCACTTGAGAATTTACCTACACCCCAGCAGCAAGGCCAAAAGCAGCAGCTACAACAACAACAACCTTCGAGGCATTCAACATCAGGGGCAATCGTTACCACACAGTGGGAGACTTTTGATAATATGCCACCATTGATCCCAATCTCATCAACATCTACATCCACAACCTCAGCAGCCAATGGTTCTGCCTACCCTAAATTTAATTGGGAGTCGTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

347

Amino Acids

38.42

Weight (kDa)

9.52

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	154 - 229	4.6e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
AasI	GACNNNNNNGTC	1 cut(s)	276
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	2 cut(s)	40, 163
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccI	GTMKAC	2 cut(s)	280, 483
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	142
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	300, 949
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	829, 1016
AcyI	GRCGYC	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	924
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	99, 924
AgsI	TTSAA	8 cut(s)	253, 310, 386, 515, 674, 691, 800, 897
AjnI	CCWGG	2 cut(s)	112, 288
AloI	GAACNNNNNNTCC	4 cut(s)	29, 61, 111, 143
AluBI	AGCT	6 cut(s)	236, 301, 474, 577, 743, 868
AluI	AGCT	6 cut(s)	236, 301, 474, 577, 743, 868
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	923
AlwI	GGATC	2 cut(s)	300, 949
AlwNI	CAGNNNCTG	2 cut(s)	83, 301
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	3 cut(s)	90, 110, 853
ApeKI	GCWGC	6 cut(s)	74, 574, 847, 862, 865, 992
ApoI	RAATTY	2 cut(s)	829, 1016
AspLEI	GCGC	4 cut(s)	166, 230, 232, 429
AspS9I	GGNCC	2 cut(s)	86, 269
AsuC2I	CCSGG	2 cut(s)	94, 352
AsuHPI	GGTGA	2 cut(s)	367, 661
AvaII	GGWCC	2 cut(s)	86, 269
BanI	GGYRCC	2 cut(s)	40, 163
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	988
BbvI	GCAGC	6 cut(s)	86, 586, 859, 874, 877, 1004
BccI	CCATC	2 cut(s)	433, 611
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	114, 290
BciVI	GTATCC	1 cut(s)	794
BcnI	CCSGG	2 cut(s)	94, 352
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	2 cut(s)	51, 711
BfoI	RGCGCY	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	6 cut(s)	75, 575, 848, 863, 866, 993
BlsI	GCNGC	6 cut(s)	76, 576, 849, 864, 867, 994
Bme1390I	CCNGG	4 cut(s)	94, 114, 290, 352
Bme18I	GGWCC	2 cut(s)	86, 269
BmgT120I	GGNCC	2 cut(s)	86, 269
BmiI	GGNNCC	2 cut(s)	42, 165
BmrFI	CCNGG	4 cut(s)	94, 114, 290, 352
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	845
BpuMI	CCSGG	2 cut(s)	94, 352
BsaBI	GATNNNNATC	1 cut(s)	959
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	93, 351, 812
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 924
Bse118I	RCCGGY	2 cut(s)	88, 486
Bse3DI	GCAATG	3 cut(s)	436, 724, 781
Bse8I	GATNNNNATC	1 cut(s)	959
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	114, 290
BseDI	CCNNGG	3 cut(s)	93, 351, 812
BseGI	GGATG	3 cut(s)	622, 688, 977
BseJI	GATNNNNATC	1 cut(s)	959
BseLI	CCNNNNNNNGG	2 cut(s)	99, 924
BseMI	GCAATG	3 cut(s)	436, 724, 781
BseMII	CTCAG	1 cut(s)	1002
BsePI	GCGCGC	1 cut(s)	228
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	6 cut(s)	86, 586, 859, 874, 877, 1004
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	92, 112, 855
BshNI	GGYRCC	2 cut(s)	40, 163
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	5 cut(s)	89, 93, 143, 351, 487
BslI	CCNNNNNNNGG	2 cut(s)	99, 924
BsmAI	GTCTC	1 cut(s)	923
BsmI	GAATGC	2 cut(s)	817, 892
BsnI	GGCC	3 cut(s)	92, 112, 855
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	5 cut(s)	151, 292, 365, 468, 954
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	3 cut(s)	92, 112, 855
BspCNI	CTCAG	1 cut(s)	1001
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	2 cut(s)	42, 165
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	300, 949
BspT107I	GGYRCC	2 cut(s)	40, 163
BsrDI	GCAATG	3 cut(s)	436, 724, 781
BsrFI	RCCGGY	2 cut(s)	88, 486
BssAI	RCCGGY	2 cut(s)	88, 486
BssECI	CCNNGG	3 cut(s)	93, 351, 812
BssHII	GCGCGC	1 cut(s)	228
BssMI	GATC	5 cut(s)	151, 292, 365, 468, 954
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	812
Bst2UI	CCWGG	2 cut(s)	114, 290
Bst4CI	ACNGT	1 cut(s)	924
BstACI	GRCGYC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	4 cut(s)	230, 234, 492, 741
BstDEI	CTNAG	2 cut(s)	395, 988
BstF5I	GGATG	3 cut(s)	622, 688, 977
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	4 cut(s)	166, 230, 232, 429
BstKTI	GATC	5 cut(s)	154, 295, 368, 471, 957
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	5 cut(s)	151, 292, 365, 468, 954
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	2 cut(s)	114, 290
BstSCI	CCNGG	4 cut(s)	92, 112, 288, 350
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	6 cut(s)	86, 586, 859, 874, 877, 1004
BstV2I	GAAGAC	1 cut(s)	393
BstZI	CGGCCG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	92, 112, 855
BtsCI	GGATG	3 cut(s)	622, 688, 977
BtsIMutI	CAGTG	1 cut(s)	929
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	230, 234, 492, 741
CaiI	CAGNNNCTG	2 cut(s)	83, 301
CfoI	GCGC	4 cut(s)	166, 230, 232, 429
Cfr10I	RCCGGY	2 cut(s)	88, 486
Cfr13I	GGNCC	2 cut(s)	86, 269
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	212, 706
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	395, 988
DinI	GGCGCC	1 cut(s)	165
DpnI	GATC	5 cut(s)	153, 294, 367, 470, 956
DpnII	GATC	5 cut(s)	151, 292, 365, 468, 954
DraIII	CACNNNGTG	1 cut(s)	924
DrdI	GACNNNNNNGTC	1 cut(s)	276
DseDI	GACNNNNNNGTC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	90
EagI	CGGCCG	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	812
Eco47I	GGWCC	2 cut(s)	86, 269
Eco52I	CGGCCG	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	112, 288
EcoT14I	CCWWGG	1 cut(s)	812
EgeI	GGCGCC	1 cut(s)	165
EheI	GGCGCC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	812
FaeI	CATG	2 cut(s)	215, 709
FalI	AAGNNNNNCTT	6 cut(s)	324, 356, 378, 410, 543, 575
FatI	CATG	2 cut(s)	211, 705
FblI	GTMKAC	2 cut(s)	280, 483
Fnu4HI	GCNGC	6 cut(s)	75, 575, 848, 863, 866, 993
FokI	GGATG	3 cut(s)	629, 695, 964
Fsp4HI	GCNGC	6 cut(s)	75, 575, 848, 863, 866, 993
FspBI	CTAG	2 cut(s)	51, 711
GlaI	GCGC	4 cut(s)	165, 229, 231, 428
GluI	GCNGC	6 cut(s)	75, 575, 848, 863, 866, 993
GsaI	CCCAGC	1 cut(s)	847
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	92, 112, 855
HapII	CCGG	5 cut(s)	89, 93, 143, 351, 487
HhaI	GCGC	4 cut(s)	166, 230, 232, 429
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	2 cut(s)	215, 709
Hin6I	GCGC	4 cut(s)	164, 228, 230, 427
HinP1I	GCGC	4 cut(s)	164, 228, 230, 427
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	6 cut(s)	80, 139, 146, 326, 583, 1028
HpaII	CCGG	5 cut(s)	89, 93, 143, 351, 487
HphI	GGTGA	2 cut(s)	367, 661
Hpy166II	GTNNAC	3 cut(s)	208, 281, 484
Hpy188I	TCNGA	7 cut(s)	132, 151, 156, 297, 466, 663, 735
Hpy188III	TCNNGA	6 cut(s)	84, 143, 341, 512, 680, 800
Hpy8I	GTNNAC	3 cut(s)	208, 281, 484
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	439, 894
HpyCH4III	ACNGT	1 cut(s)	924
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	536, 545, 634, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	395, 988
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	215, 709
HspAI	GCGC	4 cut(s)	164, 228, 230, 427
KasI	GGCGCC	1 cut(s)	163
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	151, 292, 365, 468, 954
Lsp1109I	GCAGC	6 cut(s)	86, 586, 859, 874, 877, 1004
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	2 cut(s)	51, 711
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	5 cut(s)	153, 294, 367, 470, 956
MboI	GATC	5 cut(s)	151, 292, 365, 468, 954
MboII	GAAGA	3 cut(s)	25, 265, 398
MhlI	GDGCHC	1 cut(s)	807
Mly113I	GGCGCC	1 cut(s)	164
MlyI	GAGTC	3 cut(s)	89, 140, 1037
MmeI	TCCRAC	1 cut(s)	247
MroI	TCCGGA	1 cut(s)	142
MseI	TTAA	3 cut(s)	561, 594, 1020
MslI	CAYNNNNRTG	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	5 cut(s)	89, 93, 143, 351, 487
MspR9I	CCNGG	4 cut(s)	94, 114, 290, 352
Mva1269I	GAATGC	2 cut(s)	817, 892
MvaI	CCWGG	2 cut(s)	114, 290
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	542
NarI	GGCGCC	1 cut(s)	164
NciI	CCSGG	2 cut(s)	94, 352
NdeII	GATC	5 cut(s)	151, 292, 365, 468, 954
NlaIII	CATG	2 cut(s)	215, 709
NlaIV	GGNNCC	2 cut(s)	42, 165
PaqCI	CACCTGC	1 cut(s)	637
PauI	GCGCGC	1 cut(s)	228
PctI	GAATGC	2 cut(s)	817, 892
PfeI	GAWTC	3 cut(s)	139, 326, 583
PflMI	CCANNNNNTGG	1 cut(s)	924
PkrI	GCNGC	6 cut(s)	76, 576, 849, 864, 867, 994
PleI	GAGTC	3 cut(s)	88, 140, 1036
PluTI	GGCGCC	1 cut(s)	167
PpsI	GAGTC	3 cut(s)	88, 140, 1036
Psp6I	CCWGG	2 cut(s)	112, 288
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	2 cut(s)	112, 288
PspN4I	GGNNCC	2 cut(s)	42, 165
PspPI	GGNCC	2 cut(s)	86, 269
PstNI	CAGNNNCTG	2 cut(s)	83, 301
PteI	GCGCGC	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	577
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	3 cut(s)	561, 594, 1020
SatI	GCNGC	6 cut(s)	75, 575, 848, 863, 866, 993
Sau3AI	GATC	5 cut(s)	151, 292, 365, 468, 954
Sau96I	GGNCC	2 cut(s)	86, 269
SchI	GAGTC	3 cut(s)	89, 140, 1037
ScrFI	CCNGG	4 cut(s)	94, 114, 290, 352
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	1 cut(s)	458
SfoI	GGCGCC	1 cut(s)	165
SinI	GGWCC	2 cut(s)	86, 269
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
SsiI	CCGC	1 cut(s)	170
SspDI	GGCGCC	1 cut(s)	163
SspMI	CTAG	2 cut(s)	51, 711
StyD4I	CCNGG	4 cut(s)	92, 112, 288, 350
StyI	CCWWGG	1 cut(s)	812
TaaI	ACNGT	1 cut(s)	924
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	181, 887, 1035
TaqII	GACCGA	2 cut(s)	286, 378
TfiI	GAWTC	3 cut(s)	139, 326, 583
Tru1I	TTAA	3 cut(s)	561, 594, 1020
Tru9I	TTAA	3 cut(s)	561, 594, 1020
TscAI	CASTG	1 cut(s)	929
TseI	GCWGC	6 cut(s)	74, 574, 847, 862, 865, 992
TspDTI	ATGAA	4 cut(s)	26, 71, 228, 596
TspGWI	ACGGA	2 cut(s)	151, 618
TspRI	CASTG	1 cut(s)	929
Van91I	CCANNNNNTGG	1 cut(s)	924
VpaK11BI	GGWCC	2 cut(s)	86, 269
XapI	RAATTY	2 cut(s)	829, 1016
XmiI	GTMKAC	2 cut(s)	280, 483
XspI	CTAG	2 cut(s)	51, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.