Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

65784815 .. 65789092

Gene Structure 4278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG388400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCTGGTCGGACCGACGGGTTTGCACCACCTGGATATGAAGCTGATATTCAAAGACAAGGAGAGGGATTCGAAGGCGTTTCTTGACATTTCCGGGGTGAAAGACCGATCAAAGATGGTGTGTGTTGAAGACCCTCTTAGCCAAGAAAAGCGGTATCTTGAGATGAGGCGCAATGCCAAAATGGAGAAGGCATCAAAGTTTATCTCCGAAATCAGCTTGGAAGTAGACCGGCTCGCCGGTCAGGTGTCTGCTCTTGAAACAATTATTACTAAAGGTGCAAAAGTTGCAGAACAGGATGTGCTTAAAGTGATTGAGCAGTTGATGAATCAGTTGCTTAAATTAGACGGAATTATGGGGGATGGAGATGTGAAGTTGCAAAGGAAAATGCAGGTGAAAAGAGTTCAGAAGTATGTTGAAACTCTGGATGTTTTGAAAGTTAAAAACTCCATGCCTAGTAGCAATGGGGATCATATTCCAAAGCAAGCTCATAGTCATAGACAAAATCATTCCAACGGCAATGGGCGTATCCTAACACCAATTCAAGAGCAGCAACCAAGGAATTCACTTGGGAATTTACCTACACATCAGCAGCAAGGGCAAAAGCAATTACAACAACAACAACCATCCAGGCATTCTATATCAGGGCCAATCGTTACCACGCAGTGGGAGACTTTTGATAATATGCCGCCATTGATCCCAATCTCGTCAACATCTACATCAACAACCTCAGCAGCCAATGGTTCTGCCTACCCTAAATTTAATTGGGAGTCATTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

259

Amino Acids

29.15

Weight (kDa)

9.3

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	68 - 143	2.7e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	379
AccB7I	CCANNNNNTGG	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	225
AciI	CCGC	2 cut(s)	151, 686
AclWI	GGATC	2 cut(s)	474, 688
AcsI	RAATTY	3 cut(s)	559, 571, 755
AdeI	CACNNNGTG	1 cut(s)	663
AfiI	CCNNNNNNNGG	1 cut(s)	663
AgsI	TTSAA	6 cut(s)	52, 128, 257, 416, 433, 542
AjnI	CCWGG	2 cut(s)	30, 626
AluBI	AGCT	3 cut(s)	43, 216, 485
AluI	AGCT	3 cut(s)	43, 216, 485
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	474, 688
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	3 cut(s)	547, 589, 731
ApoI	RAATTY	3 cut(s)	559, 571, 755
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	11, 644
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	109, 403
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	559, 601, 743
BccI	CCATC	3 cut(s)	109, 353, 631
BceAI	ACGGC	1 cut(s)	529
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	2 cut(s)	32, 628
BciVI	GTATCC	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	4 cut(s)	548, 590, 686, 732
BlsI	GCNGC	4 cut(s)	549, 591, 687, 733
Bme1390I	CCNGG	3 cut(s)	32, 94, 628
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 644
BmrFI	CCNGG	3 cut(s)	32, 94, 628
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	727
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	93, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse118I	RCCGGY	2 cut(s)	228, 236
Bse3DI	GCAATG	3 cut(s)	178, 466, 523
Bse8I	GATNNNNATC	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	32, 628
BseDI	CCNNGG	2 cut(s)	93, 554
BseGI	GGATG	4 cut(s)	301, 364, 430, 623
BseJI	GATNNNNATC	1 cut(s)	698
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	3 cut(s)	178, 466, 523
BseMII	CTCAG	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	559, 601, 743
BshFI	GGCC	1 cut(s)	646
BsiSI	CCGG	3 cut(s)	93, 229, 237
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	646
Bsp119I	TTCGAA	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	107, 466, 693
BspACI	CCGC	2 cut(s)	151, 686
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	1 cut(s)	740
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	474, 688
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	3 cut(s)	178, 466, 523
BsrFI	RCCGGY	2 cut(s)	228, 236
BssAI	RCCGGY	2 cut(s)	228, 236
BssECI	CCNNGG	2 cut(s)	93, 554
BssMI	GATC	3 cut(s)	107, 466, 693
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	32, 628
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	234, 483
BstDEI	CTNAG	2 cut(s)	137, 727
BstF5I	GGATG	4 cut(s)	301, 364, 430, 623
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	110, 469, 696
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	3 cut(s)	107, 466, 693
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 595
BstNI	CCWGG	2 cut(s)	32, 628
BstSCI	CCNGG	3 cut(s)	30, 92, 626
BstV1I	GCAGC	3 cut(s)	559, 601, 743
BstV2I	GAAGAC	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	301, 364, 430, 623
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	668
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	234, 483
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	228, 236
Cfr13I	GGNCC	2 cut(s)	11, 644
CpoI	CGGWCCG	1 cut(s)	11
CspI	CGGWCCG	1 cut(s)	11
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	7 cut(s)	43, 141, 216, 232, 485, 646, 734
CviKI_1	RGCY	7 cut(s)	43, 141, 216, 232, 485, 646, 734
DdeI	CTNAG	2 cut(s)	137, 727
DpnI	GATC	3 cut(s)	109, 468, 695
DpnII	GATC	3 cut(s)	107, 466, 693
DraIII	CACNNNGTG	1 cut(s)	663
Eco130I	CCWWGG	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	30, 626
EcoT14I	CCWWGG	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	1 cut(s)	451
FaiI	YATR	9 cut(s)	38, 353, 411, 449, 471, 489, 495, 638, 683
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	548, 590, 686, 732
FokI	GGATG	4 cut(s)	308, 371, 437, 610
Fsp4HI	GCNGC	4 cut(s)	548, 590, 686, 732
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	548, 590, 686, 732
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	3 cut(s)	93, 229, 237
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	3 cut(s)	68, 325, 767
HpaII	CCGG	3 cut(s)	93, 229, 237
HphI	GGTGA	2 cut(s)	109, 403
Hpy166II	GTNNAC	2 cut(s)	226, 708
Hpy188I	TCNGA	3 cut(s)	11, 208, 405
Hpy188III	TCNNGA	5 cut(s)	83, 158, 254, 422, 542
Hpy8I	GTNNAC	2 cut(s)	226, 708
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	67, 181
HpyCH4V	TGCA	5 cut(s)	25, 278, 287, 376, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 595
HpyF3I	CTNAG	2 cut(s)	137, 727
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	107, 466, 693
Lsp1109I	GCAGC	3 cut(s)	559, 601, 743
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	3 cut(s)	109, 468, 695
MboI	GATC	3 cut(s)	107, 466, 693
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	9 cut(s)	261, 338, 348, 537, 559, 571, 605, 755, 760
MlyI	GAGTC	1 cut(s)	776
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	4 cut(s)	57, 144, 159, 736
MseI	TTAA	4 cut(s)	303, 336, 438, 759
MspI	CCGG	3 cut(s)	93, 229, 237
MspR9I	CCNGG	3 cut(s)	32, 94, 628
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	2 cut(s)	32, 628
MwoI	GCNNNNNNNGC	2 cut(s)	284, 595
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	3 cut(s)	107, 466, 693
NlaIII	CATG	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	2 cut(s)	68, 325
PflMI	CCANNNNNTGG	1 cut(s)	663
PkrI	GCNGC	4 cut(s)	549, 591, 687, 733
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	30, 626
PspGI	CCWGG	2 cut(s)	30, 626
PspPI	GGNCC	2 cut(s)	11, 644
Rsr2I	CGGWCCG	1 cut(s)	11
RsrII	CGGWCCG	1 cut(s)	11
SaqAI	TTAA	4 cut(s)	303, 336, 438, 759
SatI	GCNGC	4 cut(s)	548, 590, 686, 732
Sau3AI	GATC	3 cut(s)	107, 466, 693
Sau96I	GGNCC	2 cut(s)	11, 644
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	3 cut(s)	32, 94, 628
SetI	ASST	9 cut(s)	33, 45, 218, 246, 277, 393, 487, 580, 728
SfaNI	GCATC	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	9 cut(s)	261, 338, 348, 537, 559, 571, 605, 755, 760
SsiI	CCGC	2 cut(s)	151, 686
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	30, 92, 626
StyI	CCWWGG	1 cut(s)	554
TaqI	TCGA	2 cut(s)	71, 774
TaqII	GACCGA	2 cut(s)	28, 120
TasI	AATT	9 cut(s)	261, 338, 348, 537, 559, 571, 605, 755, 760
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	2 cut(s)	68, 325
Tru1I	TTAA	4 cut(s)	303, 336, 438, 759
Tru9I	TTAA	4 cut(s)	303, 336, 438, 759
TscAI	CASTG	1 cut(s)	668
TseI	GCWGC	3 cut(s)	547, 589, 731
TspDTI	ATGAA	2 cut(s)	53, 338
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	559, 571, 755
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.