Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006122

Physical Location & Seq

Genomic Coordinates Reverse (-)

62450966 .. 62452272

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGATGAGAATGAAGAACAAGACGAGTTCAGGGGGGGAAGTGTCAATGTCTGGTATGAATGGAGGGAATGGTGGGAGCGAGTCTGGGCCGGGGGAGTGGGAGGTCAGGCCCGGAGGAATGTTGGTCCAGAAACGGAATCCGGACTCTGATCGGAACTTGGCGCCTCCGCCGACAATTCGGGTCCGGGTCAAGCACGGGTCTGTTTACCATGAAATCAGTATTGGCGCCCAAGCTTCGTTTGGGGACCTGAAGAAAATGCTGGTCGGACCGACGGGTTTGCACCACCTGGATATGAAGCTGATATTCAAAGACAAGGAGAGGGATTCGAAGGCGTTTCTTGACATTTCCGGGGTGAAAGACCGATCAAAGATGGTGTGTGTTGAAGACCCTCTTAGCCAAGAAAAGCGGTATCTTGAGATGAGGCGCAATGCCAAAATGGAGAAGGCATCAAAGTTTATCTCCGAAATCAGCTTGGAAGTAGACCGGCTCGCCGGTCAGGTGTCTGCTCTTGAAACAATTATTACTAAAGGTGCAAAAGTTGCAGAACAGGATGTGCTTAAAGTGATTGAGCAGTTGATGAATCAGTTGCTTAAATTAGACGGAATTATGGGGGATGGAGATGTGAAGTTGCAAAGGAAAATGCAGGTGAAAAGAGTTCAGAAGTATGTTGAAACTCTGGATGTTTTGAAAGTTAAAAACTCCATGCCTAGTAGCAATGGGGATCATATTCCAAAGCAAGCTCATAGTCATAGACAAAATCATTCCAACGGCAATGGGCGTATCCTAACACCAATTCAAGAGCAGCAACCAAGGAATTCACTTGGGAATTTACCTACACATCAGCAGCAAGGGCAAAAGCAATTACAACAACAACAACCATCCAGGCATTCTATATCAGGGCCAATCGTTACCACGCAGTGGGAGACTTTTGATAATATGCCGCCATTGATCCCAATCTCGTCAACATCTACATCAACAACCTCAGCAGCCAATGGTTCTGCCTACCCTAAATTTAATTGGGAGTCATTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

344

Amino Acids

38.18

Weight (kDa)

9.52

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	153 - 228	4.6e-17	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52060 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100 AT5G62100
fragaria_vesca	FvH4_7g29010 FvH4_7g29010 FvH4_7g29010 FvH4_7g29010
malus_domestica	MD01G1196900.v1.1 MD07G1264300.v1.1
prunus_persica	Prupe.2G290300_v2.0.a1
pyrus_communis	pycom01g20740 pycom07g24290
rosa_chinensis	RchiOBHm_Chr1g0376721
rosa_laevigata	RLG00000026576
rosa_multiflora	Rmu_co8257091.1_g000001 Rmu_sc0003609.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281850
rosa_rugosa	Rorug01G0397800
rosa_samantha	Rh1AG415100 Rh1BG374700 Rh1CG388400 Rh1DG405200
rosa_wichuraiana	Rw1G036390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	160, 224
AccB7I	CCANNNNNTGG	1 cut(s)	918
AccI	GTMKAC	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	3 cut(s)	167, 406, 941
AclWI	GGATC	2 cut(s)	729, 943
AcsI	RAATTY	3 cut(s)	814, 826, 1010
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	161, 225
AdeI	CACNNNGTG	1 cut(s)	918
AfiI	CCNNNNNNNGG	1 cut(s)	918
AgsI	TTSAA	6 cut(s)	307, 383, 512, 671, 688, 797
AjnI	CCWGG	2 cut(s)	285, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	4 cut(s)	233, 298, 471, 740
AluI	AGCT	4 cut(s)	233, 298, 471, 740
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	2 cut(s)	729, 943
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	3 cut(s)	86, 107, 899
ApeKI	GCWGC	3 cut(s)	802, 844, 986
ApoI	RAATTY	3 cut(s)	814, 826, 1010
AspLEI	GCGC	3 cut(s)	163, 227, 426
AspS9I	GGNCC	7 cut(s)	86, 108, 124, 181, 244, 266, 899
AsuC2I	CCSGG	4 cut(s)	90, 111, 185, 349
AsuHPI	GGTGA	2 cut(s)	364, 658
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	4 cut(s)	124, 181, 244, 266
BanI	GGYRCC	2 cut(s)	160, 224
BbsI	GAAGAC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	982
BbvI	GCAGC	3 cut(s)	814, 856, 998
BccI	CCATC	3 cut(s)	364, 608, 886
BceAI	ACGGC	1 cut(s)	784
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	2 cut(s)	287, 883
BciVI	GTATCC	1 cut(s)	791
BcnI	CCSGG	4 cut(s)	90, 111, 185, 349
BcoDI	GTCTC	1 cut(s)	917
BfaI	CTAG	1 cut(s)	708
BfoI	RGCGCY	2 cut(s)	164, 228
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	791
BisI	GCNGC	4 cut(s)	803, 845, 941, 987
BlsI	GCNGC	4 cut(s)	804, 846, 942, 988
Bme1390I	CCNGG	6 cut(s)	90, 111, 185, 287, 349, 883
Bme18I	GGWCC	4 cut(s)	124, 181, 244, 266
BmgT120I	GGNCC	7 cut(s)	86, 108, 124, 181, 244, 266, 899
BmiI	GGNNCC	4 cut(s)	162, 182, 226, 245
BmrFI	CCNGG	6 cut(s)	90, 111, 185, 287, 349, 883
BmsI	GCATC	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	982
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	4 cut(s)	90, 111, 185, 349
BsaBI	GATNNNNATC	1 cut(s)	953
BsaHI	GRCGYC	2 cut(s)	161, 225
BsaJI	CCNNGG	3 cut(s)	89, 348, 809
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse118I	RCCGGY	2 cut(s)	483, 491
Bse3DI	GCAATG	3 cut(s)	433, 721, 778
Bse8I	GATNNNNATC	1 cut(s)	953
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	287, 883
BseDI	CCNNGG	3 cut(s)	89, 348, 809
BseGI	GGATG	4 cut(s)	556, 619, 685, 878
BseJI	GATNNNNATC	1 cut(s)	953
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	3 cut(s)	433, 721, 778
BseMII	CTCAG	1 cut(s)	996
BseXI	GCAGC	3 cut(s)	814, 856, 998
BshFI	GGCC	3 cut(s)	88, 109, 901
BshNI	GGYRCC	2 cut(s)	160, 224
BsiSI	CCGG	7 cut(s)	89, 111, 140, 184, 348, 484, 492
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	886
BsnI	GGCC	3 cut(s)	88, 109, 901
Bsp119I	TTCGAA	1 cut(s)	326
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	148, 362, 721, 948
BspACI	CCGC	3 cut(s)	167, 406, 941
BspANI	GGCC	3 cut(s)	88, 109, 901
BspCNI	CTCAG	1 cut(s)	995
BspEI	TCCGGA	1 cut(s)	139
BspLI	GGNNCC	4 cut(s)	162, 182, 226, 245
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	2 cut(s)	729, 943
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	2 cut(s)	160, 224
BsrDI	GCAATG	3 cut(s)	433, 721, 778
BsrFI	RCCGGY	2 cut(s)	483, 491
BssAI	RCCGGY	2 cut(s)	483, 491
BssECI	CCNNGG	3 cut(s)	89, 348, 809
BssMI	GATC	4 cut(s)	148, 362, 721, 948
BssNI	GRCGYC	2 cut(s)	161, 225
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	287, 883
BstACI	GRCGYC	2 cut(s)	161, 225
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	489, 738
BstDEI	CTNAG	2 cut(s)	392, 982
BstF5I	GGATG	4 cut(s)	556, 619, 685, 878
BstH2I	RGCGCY	2 cut(s)	164, 228
BstHHI	GCGC	3 cut(s)	163, 227, 426
BstKTI	GATC	4 cut(s)	151, 365, 724, 951
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	4 cut(s)	148, 362, 721, 948
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 850
BstNI	CCWGG	2 cut(s)	287, 883
BstSCI	CCNGG	6 cut(s)	88, 109, 183, 285, 347, 881
BstV1I	GCAGC	3 cut(s)	814, 856, 998
BstV2I	GAAGAC	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	88, 109, 901
BtsCI	GGATG	4 cut(s)	556, 619, 685, 878
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	1 cut(s)	923
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	489, 738
CfoI	GCGC	3 cut(s)	163, 227, 426
Cfr10I	RCCGGY	2 cut(s)	483, 491
Cfr13I	GGNCC	7 cut(s)	86, 108, 124, 181, 244, 266, 899
CpoI	CGGWCCG	1 cut(s)	266
CspI	CGGWCCG	1 cut(s)	266
CviAII	CATG	2 cut(s)	209, 703
DdeI	CTNAG	2 cut(s)	392, 982
DinI	GGCGCC	2 cut(s)	162, 226
DpnI	GATC	4 cut(s)	150, 364, 723, 950
DpnII	GATC	4 cut(s)	148, 362, 721, 948
DraIII	CACNNNGTG	1 cut(s)	918
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	809
Eco47I	GGWCC	4 cut(s)	124, 181, 244, 266
Eco57I	CTGAAG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	814
EcoRII	CCWGG	2 cut(s)	285, 881
EcoT14I	CCWWGG	1 cut(s)	809
EgeI	GGCGCC	2 cut(s)	162, 226
EheI	GGCGCC	2 cut(s)	162, 226
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	2 cut(s)	212, 706
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	208, 702
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	803, 845, 941, 987
FokI	GGATG	4 cut(s)	563, 626, 692, 865
Fsp4HI	GCNGC	4 cut(s)	803, 845, 941, 987
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	3 cut(s)	162, 226, 425
GluI	GCNGC	4 cut(s)	803, 845, 941, 987
HaeII	RGCGCY	2 cut(s)	164, 228
HaeIII	GGCC	3 cut(s)	88, 109, 901
HapII	CCGG	7 cut(s)	89, 111, 140, 184, 348, 484, 492
HhaI	GCGC	3 cut(s)	163, 227, 426
Hin1I	GRCGYC	2 cut(s)	161, 225
Hin1II	CATG	2 cut(s)	212, 706
Hin6I	GCGC	3 cut(s)	161, 225, 424
HinP1I	GCGC	3 cut(s)	161, 225, 424
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	6 cut(s)	80, 136, 143, 323, 580, 1022
HpaII	CCGG	7 cut(s)	89, 111, 140, 184, 348, 484, 492
HphI	GGTGA	2 cut(s)	364, 658
Hpy166II	GTNNAC	3 cut(s)	205, 481, 963
Hpy188I	TCNGA	5 cut(s)	148, 153, 266, 463, 660
Hpy188III	TCNNGA	7 cut(s)	127, 140, 338, 413, 509, 677, 797
Hpy8I	GTNNAC	3 cut(s)	205, 481, 963
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	322, 436
HpyCH4V	TGCA	5 cut(s)	280, 533, 542, 631, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 850
HpyF3I	CTNAG	2 cut(s)	392, 982
Hsp92I	GRCGYC	2 cut(s)	161, 225
Hsp92II	CATG	2 cut(s)	212, 706
HspAI	GCGC	3 cut(s)	161, 225, 424
KasI	GGCGCC	2 cut(s)	160, 224
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	148, 362, 721, 948
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	3 cut(s)	814, 856, 998
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	4 cut(s)	150, 364, 723, 950
MboI	GATC	4 cut(s)	148, 362, 721, 948
MboII	GAAGA	3 cut(s)	25, 262, 395
Mly113I	GGCGCC	2 cut(s)	161, 225
MlyI	GAGTC	3 cut(s)	89, 137, 1031
MmeI	TCCRAC	2 cut(s)	244, 789
MnlI	CCTC	8 cut(s)	56, 94, 107, 174, 312, 399, 414, 991
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	4 cut(s)	558, 591, 693, 1014
MspI	CCGG	7 cut(s)	89, 111, 140, 184, 348, 484, 492
MspR9I	CCNGG	6 cut(s)	90, 111, 185, 287, 349, 883
Mva1269I	GAATGC	1 cut(s)	886
MvaI	CCWGG	2 cut(s)	287, 883
MwoI	GCNNNNNNNGC	2 cut(s)	539, 850
NarI	GGCGCC	2 cut(s)	161, 225
NciI	CCSGG	4 cut(s)	90, 111, 185, 349
NdeII	GATC	4 cut(s)	148, 362, 721, 948
NlaIII	CATG	2 cut(s)	212, 706
NlaIV	GGNNCC	4 cut(s)	162, 182, 226, 245
NspV	TTCGAA	1 cut(s)	326
PaqCI	CACCTGC	1 cut(s)	634
PctI	GAATGC	1 cut(s)	886
PfeI	GAWTC	3 cut(s)	136, 323, 580
PflMI	CCANNNNNTGG	1 cut(s)	918
PkrI	GCNGC	4 cut(s)	804, 846, 942, 988
PleI	GAGTC	3 cut(s)	88, 137, 1030
PluTI	GGCGCC	2 cut(s)	164, 228
PpsI	GAGTC	3 cut(s)	88, 137, 1030
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	285, 881
PspGI	CCWGG	2 cut(s)	285, 881
PspN4I	GGNNCC	4 cut(s)	162, 182, 226, 245
PspPI	GGNCC	7 cut(s)	86, 108, 124, 181, 244, 266, 899
PspPPI	RGGWCCY	1 cut(s)	244
Rsr2I	CGGWCCG	1 cut(s)	266
RsrII	CGGWCCG	1 cut(s)	266
SaqAI	TTAA	4 cut(s)	558, 591, 693, 1014
SatI	GCNGC	4 cut(s)	803, 845, 941, 987
Sau3AI	GATC	4 cut(s)	148, 362, 721, 948
Sau96I	GGNCC	7 cut(s)	86, 108, 124, 181, 244, 266, 899
SchI	GAGTC	3 cut(s)	89, 137, 1031
ScrFI	CCNGG	6 cut(s)	90, 111, 185, 287, 349, 883
SfaNI	GCATC	1 cut(s)	455
SfoI	GGCGCC	2 cut(s)	162, 226
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	4 cut(s)	124, 181, 244, 266
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	3 cut(s)	167, 406, 941
SspDI	GGCGCC	2 cut(s)	160, 224
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	6 cut(s)	88, 109, 183, 285, 347, 881
StyI	CCWWGG	1 cut(s)	809
TaqI	TCGA	2 cut(s)	326, 1029
TaqII	GACCGA	2 cut(s)	283, 375
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	3 cut(s)	136, 323, 580
Tru1I	TTAA	4 cut(s)	558, 591, 693, 1014
Tru9I	TTAA	4 cut(s)	558, 591, 693, 1014
TscAI	CASTG	1 cut(s)	923
TseI	GCWGC	3 cut(s)	802, 844, 986
TspDTI	ATGAA	5 cut(s)	26, 71, 225, 308, 593
TspGWI	ACGGA	2 cut(s)	148, 615
TspRI	CASTG	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	918
VpaK11BI	GGWCC	4 cut(s)	124, 181, 244, 266
XapI	RAATTY	3 cut(s)	814, 826, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.