Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

21410769 .. 21412526

Gene Structure 1758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCCTCCGAGGATTGGGATCTCTTCGCCGTCGTCAGAAGCTGCAGCTCTTCTGTTTCCACCACCAATTCTTGTGCTGGTCATGAAGACGACATAGGAAACTGTAAACAACAACAAGATCCTCCTCCTCCTCCTCTGTTTCAAGCTTCTTCTTCTTGCAACGAGTTACAAGATTCTTGCAAACCATTTTTACCCGTTACTACTACTACTACTACTACTTGGTCTCCTCCTCCTCTACTTCCTCCTCCTAAAGCCTCATCACCATCTCCCAATATCTTACTAAAACAAGAACAAGTACTTCTCGAATCACAAGATCAAAAACCTCCTCTTAGTGTTAGGGTTTTCCCACCATCCACTTCTTCTTCTGTCTTTGTTTTTAGAGGTCAACGCGACCAGCTTCTTCAACAACAATCCCAACCTCCCCTTCGATCTAGAAAAAGAAAGAATCAGCAAAAAAGAACCATATGTCATGTAACGCAAGAGAATCTTTCTTCTGATTTGTGGGCTTGGCGTAAATACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGAATTATTACAGATGTAGTAGCTCAAAAGGATGTTTAGCACGAAAACAAGTTGAAAGAAGTAATTTAGATCCTAATATCTTCATCGTTACTTACACCGGAGAACACACTCATCCACGTCCTACTCACCGGAACTCTCTCGCCGGAAGTACTCGTAACAAATCTCAGCCCGTTAACCCGGTTCCTAAACCGGACACATCTCCTTTATCGGATACAGTAAAAGAAGAGATTCATCTTTCTCCGACGACACCGTTGAAAGGAAACGATGACGTTCAAGAAACGAATGGAGATGAAGATATGGTTGGTCAAGAAGTCAACATGGAAGAGGAAGAGGAGGAAGAAGAAGTGGAAGAAGATGATGAAGAAGAAGAAGATGATGATGACGTGGATGATCTTTTGATACCAAATTTAGCGGTGAGAGATCGAGATGATTTGTTCTTCGCTGGAAGTTTTCCATCTTGGTCCGCCGGATCCGCCGGTGACGGTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

348

Amino Acids

38.72

Weight (kDa)

4.72

Isoelectric Point (pI)

77.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	166 - 223	7.7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AciI	CCGC	3 cut(s)	965, 1017, 1026
AclWI	GGATC	5 cut(s)	27, 113, 617, 1017, 1030
AcsI	RAATTY	1 cut(s)	958
AfaI	GTAC	2 cut(s)	297, 703
AfiI	CCNNNNNNNGG	3 cut(s)	15, 536, 809
AgsI	TTSAA	5 cut(s)	143, 404, 608, 808, 827
AjiI	CACGTC	2 cut(s)	671, 937
AjuI	GAANNNNNNNTTGG	4 cut(s)	408, 440, 837, 869
AluBI	AGCT	5 cut(s)	42, 48, 146, 397, 576
AluI	AGCT	5 cut(s)	42, 48, 146, 397, 576
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	5 cut(s)	27, 113, 617, 1017, 1030
AlwNI	CAGNNNCTG	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	42, 45
ApoI	RAATTY	1 cut(s)	958
Asp700I	GAANNNNTTC	1 cut(s)	780
AspS9I	GGNCC	1 cut(s)	1014
AsuC2I	CCSGG	1 cut(s)	731
AsuHPI	GGTGA	4 cut(s)	252, 671, 979, 1043
AvaII	GGWCC	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	1022
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	29, 57
BccI	CCATC	4 cut(s)	271, 358, 539, 1015
BceAI	ACGGC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	731
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	2 cut(s)	43, 46
BlsI	GCNGC	2 cut(s)	44, 47
BmcAI	AGTACT	2 cut(s)	297, 703
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	1 cut(s)	1014
BmgBI	CACGTC	2 cut(s)	671, 937
BmgT120I	GGNCC	1 cut(s)	1014
BmiI	GGNNCC	2 cut(s)	735, 1024
BmrFI	CCNGG	1 cut(s)	731
BpiI	GAAGAC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	9, 551
BsaWI	WCCGGW	3 cut(s)	650, 681, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 536, 809
Bse118I	RCCGGY	1 cut(s)	1028
Bse8I	GATNNNNATC	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	9, 551
BseGI	GGATG	4 cut(s)	350, 590, 664, 946
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	15, 536, 809
BseMII	CTCAG	1 cut(s)	731
BseXI	GCAGC	2 cut(s)	29, 57
Bsh1236I	CGCG	1 cut(s)	390
BsiSI	CCGG	7 cut(s)	651, 682, 696, 731, 743, 1020, 1029
BslI	CCNNNNNNNGG	3 cut(s)	15, 536, 809
BsmAI	GTCTC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	228
Bsp143I	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
BspACI	CCGC	3 cut(s)	965, 1017, 1026
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	735, 1024
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	5 cut(s)	27, 113, 617, 1017, 1030
BspQI	GCTCTTC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	1028
BssAI	RCCGGY	1 cut(s)	1028
BssECI	CCNNGG	2 cut(s)	9, 551
BssMI	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
BssT1I	CCWWGG	1 cut(s)	551
Bst4CI	ACNGT	5 cut(s)	104, 521, 769, 804, 1037
Bst6I	CTCTTC	5 cut(s)	29, 55, 771, 870, 876
BstDEI	CTNAG	2 cut(s)	329, 717
BstF5I	GGATG	4 cut(s)	350, 590, 664, 946
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	8 cut(s)	22, 121, 316, 431, 625, 946, 976, 1025
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
BstMWI	GCNNNNNNNGC	1 cut(s)	1025
BstSCI	CCNGG	1 cut(s)	729
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	29, 57
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	4 cut(s)	19, 118, 622, 1022
BstYI	RGATCY	4 cut(s)	19, 118, 622, 1022
BsuI	GTATCC	1 cut(s)	757
BtrI	CACGTC	2 cut(s)	671, 937
BtsCI	GGATG	4 cut(s)	350, 590, 664, 946
CaiI	CAGNNNCTG	1 cut(s)	42
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	1028
Cfr13I	GGNCC	1 cut(s)	1014
Csp6I	GTAC	2 cut(s)	296, 702
CviAII	CATG	3 cut(s)	83, 470, 871
CviJI	RGCY	9 cut(s)	42, 48, 146, 254, 397, 506, 540, 576, 721
CviKI_1	RGCY	9 cut(s)	42, 48, 146, 254, 397, 506, 540, 576, 721
CviQI	GTAC	2 cut(s)	296, 702
DdeI	CTNAG	2 cut(s)	329, 717
DpnI	GATC	8 cut(s)	21, 120, 315, 430, 624, 945, 975, 1024
DpnII	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
Eam1104I	CTCTTC	5 cut(s)	29, 55, 771, 870, 876
EarI	CTCTTC	5 cut(s)	29, 55, 771, 870, 876
EciI	GGCGGA	2 cut(s)	1006, 1015
Eco130I	CCWWGG	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	1014
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaeI	CATG	3 cut(s)	86, 473, 874
FaiI	YATR	7 cut(s)	84, 95, 464, 466, 471, 851, 872
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	3 cut(s)	82, 469, 870
FauNDI	CATATG	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	43, 46
FokI	GGATG	4 cut(s)	337, 597, 651, 953
Fsp4HI	GCNGC	2 cut(s)	43, 46
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	2 cut(s)	43, 46
HapII	CCGG	7 cut(s)	651, 682, 696, 731, 743, 1020, 1029
Hin1II	CATG	3 cut(s)	86, 473, 874
HincII	GTYRAC	3 cut(s)	386, 727, 868
HindII	GTYRAC	3 cut(s)	386, 727, 868
HindIII	AAGCTT	1 cut(s)	144
HinfI	GANTC	5 cut(s)	173, 305, 445, 484, 781
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	7 cut(s)	651, 682, 696, 731, 743, 1020, 1029
HphI	GGTGA	4 cut(s)	252, 671, 979, 1043
Hpy166II	GTNNAC	4 cut(s)	107, 386, 727, 868
Hpy188I	TCNGA	5 cut(s)	10, 38, 496, 763, 795
Hpy188III	TCNNGA	6 cut(s)	83, 302, 432, 827, 860, 977
Hpy8I	GTNNAC	4 cut(s)	107, 386, 727, 868
Hpy99I	CGWCG	2 cut(s)	35, 799
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	5 cut(s)	104, 521, 769, 804, 1037
HpyCH4IV	ACGT	3 cut(s)	670, 822, 936
HpyCH4V	TGCA	3 cut(s)	45, 159, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1025
HpyF3I	CTNAG	2 cut(s)	329, 717
HpySE526I	ACGT	3 cut(s)	670, 822, 936
Hsp92II	CATG	3 cut(s)	86, 473, 874
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
LguI	GCTCTTC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	29, 57
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	3 cut(s)	670, 822, 936
MaeIII	GTNAC	6 cut(s)	165, 196, 472, 640, 707, 1031
MalI	GATC	8 cut(s)	21, 120, 315, 430, 624, 945, 975, 1024
MboI	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
MflI	RGATCY	4 cut(s)	19, 118, 622, 1022
MluCI	AATT	4 cut(s)	67, 556, 616, 958
MmeI	TCCRAC	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	1 cut(s)	726
MspI	CCGG	7 cut(s)	651, 682, 696, 731, 743, 1020, 1029
MspR9I	CCNGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	1025
NciI	CCSGG	1 cut(s)	731
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
NlaIII	CATG	3 cut(s)	86, 473, 874
NlaIV	GGNNCC	2 cut(s)	735, 1024
NmuCI	GTSAC	1 cut(s)	1031
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	5 cut(s)	173, 305, 445, 484, 781
PkrI	GCNGC	2 cut(s)	44, 47
PspN4I	GGNNCC	2 cut(s)	735, 1024
PspPI	GGNCC	1 cut(s)	1014
PstI	CTGCAG	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	42
PsuI	RGATCY	4 cut(s)	19, 118, 622, 1022
RsaI	GTAC	2 cut(s)	297, 703
RsaNI	GTAC	2 cut(s)	296, 702
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	2 cut(s)	43, 46
Sau3AI	GATC	8 cut(s)	19, 118, 313, 428, 622, 943, 973, 1022
Sau96I	GGNCC	1 cut(s)	1014
ScaI	AGTACT	2 cut(s)	297, 703
ScrFI	CCNGG	1 cut(s)	731
SfcI	CTRYAG	1 cut(s)	43
SgrAI	CRCCGGYG	1 cut(s)	1028
SinI	GGWCC	1 cut(s)	1014
Sse9I	AATT	4 cut(s)	67, 556, 616, 958
SsiI	CCGC	3 cut(s)	965, 1017, 1026
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	5 cut(s)	104, 521, 769, 804, 1037
TaiI	ACGT	3 cut(s)	673, 825, 939
TaqI	TCGA	3 cut(s)	303, 427, 976
TasI	AATT	4 cut(s)	67, 556, 616, 958
TatI	WGTACW	2 cut(s)	295, 701
TfiI	GAWTC	5 cut(s)	173, 305, 445, 484, 781
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TseFI	GTSAC	1 cut(s)	1031
TseI	GCWGC	2 cut(s)	42, 45
Tsp45I	GTSAC	1 cut(s)	1031
TspDTI	ATGAA	5 cut(s)	99, 625, 773, 858, 927
VpaK11BI	GGWCC	1 cut(s)	1014
XapI	RAATTY	1 cut(s)	958
XbaI	TCTAGA	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	2 cut(s)	297, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.