Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

19809343 .. 19811074

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCAGATGATTGGGATCTTTACGCCGTGGTAAGGGGTTGCAAATCAACCGCCCAGATCACCACAAACACAACCATCACCGCCGCCACCACCGCGATCGTACCCACAACCCCTATCCATACACCGTCGGATGAATTCGCAGACGACCCTTTTTGGGATTTGTTGATCAGTTCCGACGAGTTAACTGATCCGTTGTTCTCTTTTCCCGATCTAGACGATCCCAAAGACAATGATTTGCAAGAGCAGCAACAGTCCTTTATCCCCAACCCCACCACCACCAACAACAACAAGAACAACAATCCTAGCACTAACAACACCACCCGTGGACCTAATAATATTATTCCAATTTCCCCCACTATTTCTGACTTTGGAGGATCAAGTGGTAGTGGCCAACATCACCTCCAACAACATCAACAGCAACATCATGCACAACTCCAACAACAACAGCTGCGGCAGCAGCAGAACCAGCAACATCATTTGATGCCTGATCATTTCACCCGGGGAATACCGGCTCCTGCTTTTCGAGGAATCTATGGCCAACAACAACCGCAAATGATGCAGCGGGGGTATCAAATTCTTCAACCCCAGCAGCCCCAAAATCAGCAGGGATTTATGAGGCCCGGGTCCATGAATCCCACTTATCCTCTTCCTCGGCTACCAATTACCATGCCATTGCACACCCCTCGCTCTCAAAGAAGAAGGAGAACCCAGCAAAATAAAAAGGTGTGTGAAGTGAAAGCTGAGGATCTCACGGCCGATTTATGGGCGTGGCGGAAGTACGGCCAAAAACCTATCAAGGGTTCTCCCCATCCAAGGAACTATTACCGATGTAGCACCTCAAAAGGGTGTGCGGCGAGGAAGCATGTGGAGCGGAGCACGACAGATCCCAACATCTTCACAGTCACATACTCCGGCGACCACACTCACGCTCGCCCGACTCATCGGAACTCGCTTGCCGGTACCTCCAGGAACAAGCAGTCAGCTGCGTCTAAGAGTCAAAAGCAGCCAATCAACAACGATTCTGGTTGGGCAGCTGTTCCCAACCCCTCGTCTCCCACCACCGGACAACCCTTGACAGTCCAAGCTGAGGCTGTAGCCAATAAGGTCAATTCTGACAATTCACTCGACAAAGAAAATGAGGAATTTGATGATGACGATGAGGAGATGGATGAGACCGAGTACGGGGATGAGGACGAGGATGATGATGTTGTGATCCCGGACATGGACTTGTCGGATGAGATATTCATGGGGCAGAAGGAACTAGGTAGTACTAGTTCTAGTGGAAGTGGAAGTTCTTCTCTGGTGGGTGCTTCCGGTGATAATTTTTCGGATAATGTGCAATCGAGTTTGGGGTATTCTTGGACTGATGCTAATTGCTCCTCCGCTGCCGGAGCAACCGTTGGCGGTGGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

472

Amino Acids

51.95

Weight (kDa)

5.15

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	253 - 309	2.8e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	959
AccB1I	GGYRCC	1 cut(s)	959
AccBSI	CCGCTC	1 cut(s)	871
AccII	CGCG	1 cut(s)	95
AclWI	GGATC	7 cut(s)	24, 182, 212, 382, 753, 878, 1207
AcoI	YGGCCR	4 cut(s)	388, 535, 753, 781
AcsI	RAATTY	3 cut(s)	134, 573, 1142
AfaI	GTAC	5 cut(s)	102, 779, 961, 1181, 1270
AgsI	TTSAA	1 cut(s)	581
AhlI	ACTAGT	1 cut(s)	1271
AjnI	CCWGG	1 cut(s)	965
AluBI	AGCT	5 cut(s)	448, 740, 983, 1034, 1085
AluI	AGCT	5 cut(s)	448, 740, 983, 1034, 1085
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	2 cut(s)	1056, 1166
AlwI	GGATC	7 cut(s)	24, 182, 212, 382, 753, 878, 1207
Ama87I	CYCGRG	2 cut(s)	498, 620
AoxI	GGCC	5 cut(s)	388, 535, 617, 753, 781
ApoI	RAATTY	3 cut(s)	134, 573, 1142
Asp700I	GAANNNNTTC	1 cut(s)	1294
Asp718I	GGTACC	1 cut(s)	959
AspS9I	GGNCC	3 cut(s)	326, 618, 624
AsuC2I	CCSGG	5 cut(s)	499, 500, 621, 622, 1217
AsuHPI	GGTGA	5 cut(s)	52, 70, 389, 487, 1328
AvaI	CYCGRG	2 cut(s)	498, 620
AvaII	GGWCC	2 cut(s)	326, 624
BalI	TGGCCA	2 cut(s)	390, 537
BanI	GGYRCC	1 cut(s)	959
Bbv12I	GWGCWC	1 cut(s)	878
BbvCI	CCTCAGC	2 cut(s)	741, 1086
BccI	CCATC	3 cut(s)	83, 816, 1159
BceAI	ACGGC	3 cut(s)	11, 768, 796
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	967
BclI	TGATCA	2 cut(s)	165, 487
BcnI	CCSGG	5 cut(s)	499, 500, 621, 622, 1217
BcoDI	GTCTC	2 cut(s)	1056, 1166
BcuI	ACTAGT	1 cut(s)	1271
BfaI	CTAG	6 cut(s)	212, 303, 1262, 1272, 1278, 1414
BfmI	CTRYAG	1 cut(s)	1092
BmcAI	AGTACT	1 cut(s)	1270
Bme1390I	CCNGG	6 cut(s)	499, 500, 621, 622, 967, 1217
Bme18I	GGWCC	2 cut(s)	326, 624
BmeT110I	CYCGRG	2 cut(s)	498, 620
BmgT120I	GGNCC	3 cut(s)	326, 618, 624
BmiI	GGNNCC	3 cut(s)	513, 625, 961
BmrFI	CCNGG	6 cut(s)	499, 500, 621, 622, 967, 1217
BmsI	GCATC	3 cut(s)	471, 546, 1357
BpmI	CTGGAG	1 cut(s)	949
Bpu10I	CCTNAGC	2 cut(s)	741, 1086
BpuMI	CCSGG	5 cut(s)	499, 500, 621, 622, 1217
BsaBI	GATNNNNATC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	1166
BsaJI	CCNNGG	7 cut(s)	27, 322, 498, 499, 620, 650, 812
BsaWI	WCCGGW	2 cut(s)	1061, 1313
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 1383, 1413
Bse118I	RCCGGY	2 cut(s)	508, 956
Bse3DI	GCAATG	1 cut(s)	671
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	967
BseDI	CCNNGG	7 cut(s)	27, 322, 498, 499, 620, 650, 812
BseGI	GGATG	6 cut(s)	136, 808, 1174, 1192, 1204, 1240
BseJI	GATNNNNATC	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	671
BseMII	CTCAG	2 cut(s)	732, 1077
BseRI	GAGGAG	2 cut(s)	1175, 1369
BseX3I	CGGCCG	1 cut(s)	753
BseYI	CCCAGC	2 cut(s)	585, 708
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	2 cut(s)	99, 756
BshFI	GGCC	5 cut(s)	390, 537, 619, 755, 783
BshNI	GGYRCC	1 cut(s)	959
BsiEI	CGRYCG	2 cut(s)	99, 756
BsiHKAI	GWGCWC	1 cut(s)	878
BsiHKCI	CYCGRG	2 cut(s)	498, 620
BsiSI	CCGG	9 cut(s)	499, 509, 621, 912, 957, 1062, 1217, 1314, 1389
BsmAI	GTCTC	2 cut(s)	1056, 1166
BsmBI	CGTCTC	1 cut(s)	1056
BsnI	GGCC	5 cut(s)	390, 537, 619, 755, 783
Bso31I	GGTCTC	1 cut(s)	1166
BsoBI	CYCGRG	2 cut(s)	498, 620
Bsp1286I	GDGCHC	1 cut(s)	878
BspANI	GGCC	5 cut(s)	390, 537, 619, 755, 783
BspCNI	CTCAG	2 cut(s)	733, 1078
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	513, 625, 961
BspPI	GGATC	7 cut(s)	24, 182, 212, 382, 753, 878, 1207
BspT107I	GGYRCC	1 cut(s)	959
BspTNI	GGTCTC	1 cut(s)	1166
BsrBI	CCGCTC	1 cut(s)	871
BsrDI	GCAATG	1 cut(s)	671
BsrFI	RCCGGY	2 cut(s)	508, 956
BssAI	RCCGGY	2 cut(s)	508, 956
BssECI	CCNNGG	7 cut(s)	27, 322, 498, 499, 620, 650, 812
BssT1I	CCWWGG	1 cut(s)	812
Bst2UI	CCWGG	1 cut(s)	967
Bst4CI	ACNGT	5 cut(s)	126, 252, 901, 1078, 1399
Bst6I	CTCTTC	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	931, 954
BstDEI	CTNAG	3 cut(s)	741, 990, 1086
BstDSI	CCRYGG	2 cut(s)	27, 322
BstF5I	GGATG	6 cut(s)	136, 808, 1174, 1192, 1204, 1240
BstFNI	CGCG	1 cut(s)	95
BstMAI	GTCTC	2 cut(s)	1056, 1166
BstMCI	CGRYCG	2 cut(s)	99, 756
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 244, 454, 457, 466, 556, 868, 1391, 1410
BstNI	CCWGG	1 cut(s)	967
BstNSI	RCATGY	1 cut(s)	866
BstSCI	CCNGG	6 cut(s)	497, 498, 619, 620, 965, 1215
BstSFI	CTRYAG	1 cut(s)	1092
BstUI	CGCG	1 cut(s)	95
BstX2I	RGATCY	3 cut(s)	16, 745, 883
BstYI	RGATCY	3 cut(s)	16, 745, 883
BstZI	CGGCCG	1 cut(s)	753
BsuRI	GGCC	5 cut(s)	390, 537, 619, 755, 783
BtgI	CCRYGG	2 cut(s)	27, 322
BtsCI	GGATG	6 cut(s)	136, 808, 1174, 1192, 1204, 1240
Cac8I	GCNNGC	2 cut(s)	931, 954
Cfr10I	RCCGGY	2 cut(s)	508, 956
Cfr13I	GGNCC	3 cut(s)	326, 618, 624
Cfr9I	CCCGGG	2 cut(s)	498, 620
CseI	GACGC	1 cut(s)	975
Csp6I	GTAC	5 cut(s)	101, 778, 960, 1180, 1269
CviAII	CATG	6 cut(s)	425, 628, 667, 863, 1222, 1246
CviQI	GTAC	5 cut(s)	101, 778, 960, 1180, 1269
DdeI	CTNAG	3 cut(s)	741, 990, 1086
EaeI	YGGCCR	4 cut(s)	388, 535, 753, 781
EagI	CGGCCG	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
EciI	GGCGGA	1 cut(s)	787
EclXI	CGGCCG	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	812
Eco31I	GGTCTC	1 cut(s)	1166
Eco47I	GGWCC	2 cut(s)	326, 624
Eco52I	CGGCCG	1 cut(s)	753
Eco88I	CYCGRG	2 cut(s)	498, 620
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	965
EcoT14I	CCWWGG	1 cut(s)	812
ErhI	CCWWGG	1 cut(s)	812
Esp3I	CGTCTC	1 cut(s)	1056
FaeI	CATG	6 cut(s)	428, 631, 670, 866, 1225, 1249
FatI	CATG	6 cut(s)	424, 627, 666, 862, 1221, 1245
FauI	CCCGC	1 cut(s)	555
FbaI	TGATCA	2 cut(s)	165, 487
FokI	GGATG	6 cut(s)	143, 795, 1181, 1199, 1211, 1247
FspBI	CTAG	6 cut(s)	212, 303, 1262, 1272, 1278, 1414
GsaI	CCCAGC	2 cut(s)	589, 712
GsuI	CTGGAG	1 cut(s)	949
HaeIII	GGCC	5 cut(s)	390, 537, 619, 755, 783
HapII	CCGG	9 cut(s)	499, 509, 621, 912, 957, 1062, 1217, 1314, 1389
HgaI	GACGC	1 cut(s)	975
Hin1II	CATG	6 cut(s)	428, 631, 670, 866, 1225, 1249
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	528, 631, 937, 994, 1019
HpaI	GTTAAC	1 cut(s)	183
HpaII	CCGG	9 cut(s)	499, 509, 621, 912, 957, 1062, 1217, 1314, 1389
HphI	GGTGA	5 cut(s)	52, 70, 389, 487, 1328
Hpy166II	GTNNAC	2 cut(s)	183, 326
Hpy188I	TCNGA	7 cut(s)	130, 175, 364, 945, 1114, 1234, 1330
Hpy188III	TCNNGA	2 cut(s)	206, 212
Hpy8I	GTNNAC	2 cut(s)	183, 326
Hpy99I	CGWCG	2 cut(s)	130, 179
HpyAV	CCTTC	2 cut(s)	693, 1249
HpyCH4III	ACNGT	5 cut(s)	126, 252, 901, 1078, 1399
HpyCH4V	TGCA	6 cut(s)	42, 238, 428, 559, 676, 1339
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 244, 454, 457, 466, 556, 868, 1391, 1410
HpyF3I	CTNAG	3 cut(s)	741, 990, 1086
Hsp92II	CATG	6 cut(s)	428, 631, 670, 866, 1225, 1249
KpnI	GGTACC	1 cut(s)	963
Ksp22I	TGATCA	2 cut(s)	165, 487
KspAI	GTTAAC	1 cut(s)	183
LmnI	GCTCC	5 cut(s)	517, 868, 873, 1382, 1391
LweI	GCATC	3 cut(s)	471, 546, 1357
MaeI	CTAG	6 cut(s)	212, 303, 1262, 1272, 1278, 1414
MaeIII	GTNAC	1 cut(s)	901
MbiI	CCGCTC	1 cut(s)	871
MboII	GAAGA	5 cut(s)	569, 638, 708, 886, 1287
MflI	RGATCY	3 cut(s)	16, 745, 883
MhlI	GDGCHC	1 cut(s)	878
MlsI	TGGCCA	2 cut(s)	390, 537
MluCI	AATT	9 cut(s)	134, 345, 573, 660, 1108, 1117, 1142, 1321, 1372
MluNI	TGGCCA	2 cut(s)	390, 537
MlyI	GAGTC	2 cut(s)	931, 1003
MmeI	TCCRAC	5 cut(s)	108, 198, 427, 460, 1212
Mox20I	TGGCCA	2 cut(s)	390, 537
MroXI	GAANNNNTTC	1 cut(s)	1294
MscI	TGGCCA	2 cut(s)	390, 537
MseI	TTAA	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	390, 537
MspA1I	CMGCKG	5 cut(s)	448, 562, 983, 1034, 1385
MspI	CCGG	9 cut(s)	499, 509, 621, 912, 957, 1062, 1217, 1314, 1389
MspR9I	CCNGG	6 cut(s)	499, 500, 621, 622, 967, 1217
MvaI	CCWGG	1 cut(s)	967
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	9 cut(s)	92, 244, 454, 457, 466, 556, 868, 1391, 1410
NciI	CCSGG	5 cut(s)	499, 500, 621, 622, 1217
NlaIII	CATG	6 cut(s)	428, 631, 670, 866, 1225, 1249
NlaIV	GGNNCC	3 cut(s)	513, 625, 961
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	901
NspI	RCATGY	1 cut(s)	866
PdmI	GAANNNNTTC	1 cut(s)	1294
PfeI	GAWTC	3 cut(s)	528, 631, 1019
PfoI	TCCNGGA	2 cut(s)	965, 1215
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	931, 1002
PpsI	GAGTC	2 cut(s)	931, 1002
Psp6I	CCWGG	1 cut(s)	965
PspFI	CCCAGC	2 cut(s)	585, 708
PspGI	CCWGG	1 cut(s)	965
PspN4I	GGNNCC	3 cut(s)	513, 625, 961
PspPI	GGNCC	3 cut(s)	326, 618, 624
PsrI	GAACNNNNNNTAC	2 cut(s)	1258, 1290
PsuI	RGATCY	3 cut(s)	16, 745, 883
PvuI	CGATCG	1 cut(s)	99
PvuII	CAGCTG	3 cut(s)	448, 983, 1034
RsaI	GTAC	5 cut(s)	102, 779, 961, 1181, 1270
RsaNI	GTAC	5 cut(s)	101, 778, 960, 1180, 1269
SaqAI	TTAA	1 cut(s)	182
Sau96I	GGNCC	3 cut(s)	326, 618, 624
ScaI	AGTACT	1 cut(s)	1270
SchI	GAGTC	2 cut(s)	931, 1003
ScrFI	CCNGG	6 cut(s)	499, 500, 621, 622, 967, 1217
SduI	GDGCHC	1 cut(s)	878
SfaNI	GCATC	3 cut(s)	471, 546, 1357
SfcI	CTRYAG	1 cut(s)	1092
SinI	GGWCC	2 cut(s)	326, 624
SmaI	CCCGGG	2 cut(s)	500, 622
SpeI	ACTAGT	1 cut(s)	1271
Sse9I	AATT	9 cut(s)	134, 345, 573, 660, 1108, 1117, 1142, 1321, 1372
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	6 cut(s)	212, 303, 1262, 1272, 1278, 1414
StyD4I	CCNGG	6 cut(s)	497, 498, 619, 620, 965, 1215
StyI	CCWWGG	1 cut(s)	812
TaaI	ACNGT	5 cut(s)	126, 252, 901, 1078, 1399
TaqI	TCGA	3 cut(s)	523, 1125, 1343
TaqII	GACCGA	1 cut(s)	1190
TasI	AATT	9 cut(s)	134, 345, 573, 660, 1108, 1117, 1142, 1321, 1372
TatI	WGTACW	1 cut(s)	1268
TauI	GCSGC	3 cut(s)	86, 454, 854
TfiI	GAWTC	3 cut(s)	528, 631, 1019
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	901
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	3 cut(s)	147, 644, 1234
TspGWI	ACGGA	1 cut(s)	180
TspMI	CCCGGG	2 cut(s)	498, 620
VpaK11BI	GGWCC	2 cut(s)	326, 624
XapI	RAATTY	3 cut(s)	134, 573, 1142
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	866
XmaI	CCCGGG	2 cut(s)	498, 620
XmnI	GAANNNNTTC	1 cut(s)	1294
XspI	CTAG	6 cut(s)	212, 303, 1262, 1272, 1278, 1414
ZrmI	AGTACT	1 cut(s)	1270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.