Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

66855351 .. 66857223

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAAGATGATGATTGGGATCTTTACGCGGTGGTGCGCAGCTGTAAAGCTGTCACCACCGCCAGAGCCTCGCTTCCTGTTGTAACAGCACCCAATCCGGTTCACCACGACGACTCTTCTGTGCCGTCGTGGATGTGGGATTGGGTGAAGCACGAGGAGGTGGAGACTCATGTCCCGCCAGTCAGGTTTTCCAATCTCGAGTTCAGAGCTGGCGATGGATTGGAGGAGTTTTACCAACCCTTTTTCCCAAGCCCCACCATTGATAATACCACCGCCACCACCATCACCACTGGTACTAGTAGTTATGCTCCTGCTGGTACTATTATTCCAAATTCCTCTACCTCCTTTATCTCTGACTTTGGAGGAGGATCTACTAGTAGTGGCCAACATCAACTACAACAACAGCAGAATAATTTCATGCCTGCGAATACCAACACCAGTCCTCATTTCAACCCCGGATTCGCACCCGTTTCGGGTTTGGGAAGATTCCCCGAACAACAACTCCTAAAACCGCCCAAGCTAGAAACTCCTGAGAATCCGGAAGAGTTAATTCCGAGGCTCAAGCCGGTCTCTTTGGTCGGTCCTGCCATACCGCCCATGCAAATTCCACCGAACCTGATCCGACCAAGGAAGAGGAAGAGCCCAGTCAAGAAGATGGTGTGTCATTTGGCAGCGGACAATCTCTCCTCATCGGATTTGTGGGCGTGGCGGAAATATGGTCAGAAACCTATAAAAGGCTCTCCACATCCAAGGTTTTTCAGTTCTCTCCATTTTGTTATCAAAATTTTCCGCTTTTTATTTGCGAGTTTGTCTCTGGGAAACAAGCAGTTTTTGTATGCAGGAACTACTACCGCTGCAGCAGCTCAAAGGGTTGCTCTGCCAGAAAGCAAGTGGAGCGAAGCACCGAGGACCCTAACATGTTTGTTGTCACATACTGCGGAGACCACACGCATCCTCGCCCGACTCACCGGAACTCTCTCGCCGGAAGCACCAGGAACAAGGCGGCAGCGACGACTTCAAAAGCGAAAGATCCCGAGTCTCCCTCCGTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

351

Amino Acids

38.93

Weight (kDa)

9.62

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	38
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	538
AclWI	GGATC	4 cut(s)	27, 376, 613, 1024
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	331, 603, 783
AfaI	GTAC	2 cut(s)	295, 319
AfiI	CCNNNNNNNGG	2 cut(s)	473, 734
AflIII	ACRYGT	1 cut(s)	917
AgsI	TTSAA	3 cut(s)	451, 1019, 1051
AhlI	ACTAGT	2 cut(s)	296, 374
AjnI	CCWGG	1 cut(s)	991
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	5 cut(s)	42, 50, 209, 520, 863
AluI	AGCT	5 cut(s)	42, 50, 209, 520, 863
Alw26I	GTCTC	5 cut(s)	158, 574, 816, 935, 1043
AlwI	GGATC	4 cut(s)	27, 376, 613, 1024
Ama87I	CYCGRG	2 cut(s)	197, 1033
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	6 cut(s)	39, 671, 854, 857, 860, 1006
ApoI	RAATTY	3 cut(s)	331, 603, 783
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	581, 909
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	5 cut(s)	46, 95, 157, 277, 958
AvaI	CYCGRG	2 cut(s)	197, 1033
AvaII	GGWCC	2 cut(s)	581, 909
BalI	TGGCCA	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	6 cut(s)	51, 683, 841, 869, 872, 1018
BccI	CCATC	3 cut(s)	209, 290, 649
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	453, 487
BciT130I	CCWGG	1 cut(s)	993
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	5 cut(s)	158, 574, 816, 935, 1043
BcuI	ACTAGT	2 cut(s)	296, 374
BfaI	CTAG	3 cut(s)	297, 375, 521
BfmI	CTRYAG	1 cut(s)	855
BisI	GCNGC	7 cut(s)	40, 672, 855, 858, 861, 1004, 1007
BlsI	GCNGC	7 cut(s)	41, 673, 856, 859, 862, 1005, 1008
Bme1390I	CCNGG	2 cut(s)	456, 993
Bme18I	GGWCC	2 cut(s)	581, 909
BmeT110I	CYCGRG	2 cut(s)	197, 1033
BmgT120I	GGNCC	2 cut(s)	581, 909
BmiI	GGNNCC	1 cut(s)	911
BmrFI	CCNGG	2 cut(s)	456, 993
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	638
BoxI	GACNNNNGTC	1 cut(s)	170
BplI	GAGNNNNNCTC	3 cut(s)	796, 828, 1027
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	574, 935
BsaJI	CCNNGG	5 cut(s)	454, 554, 626, 749, 905
BsaWI	WCCGGW	3 cut(s)	97, 538, 968
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 734
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	4 cut(s)	179, 295, 438, 644
Bse8I	GATNNNNATC	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	993
BseDI	CCNNGG	5 cut(s)	454, 554, 626, 749, 905
BseGI	GGATG	3 cut(s)	138, 745, 951
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	473, 734
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	4 cut(s)	179, 295, 438, 644
BseRI	GAGGAG	4 cut(s)	170, 239, 378, 676
BseXI	GCAGC	6 cut(s)	51, 683, 841, 869, 872, 1018
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	384
BsiHKCI	CYCGRG	2 cut(s)	197, 1033
BsiSI	CCGG	6 cut(s)	98, 456, 539, 566, 969, 983
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	473, 734
BsmAI	GTCTC	5 cut(s)	158, 574, 816, 935, 1043
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	2 cut(s)	574, 935
BsoBI	CYCGRG	2 cut(s)	197, 1033
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	19, 368, 618, 1029
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	523
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	911
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	4 cut(s)	27, 376, 613, 1024
BspQI	GCTCTTC	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	574, 935
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	4 cut(s)	179, 295, 438, 644
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	5 cut(s)	454, 554, 626, 749, 905
BssMI	GATC	4 cut(s)	19, 368, 618, 1029
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	2 cut(s)	626, 749
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	993
Bst6I	CTCTTC	4 cut(s)	121, 537, 626, 632
BstC8I	GCNNGC	2 cut(s)	211, 423
BstDEI	CTNAG	1 cut(s)	531
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	3 cut(s)	138, 745, 951
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	4 cut(s)	22, 371, 621, 1032
BstMAI	GTCTC	5 cut(s)	158, 574, 816, 935, 1043
BstMBI	GATC	4 cut(s)	19, 368, 618, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	860, 894
BstNI	CCWGG	1 cut(s)	993
BstNSI	RCATGY	1 cut(s)	921
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	454, 991
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	6 cut(s)	51, 683, 841, 869, 872, 1018
BstX2I	RGATCY	3 cut(s)	19, 368, 1029
BstYI	RGATCY	3 cut(s)	19, 368, 1029
BsuRI	GGCC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	138, 745, 951
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	211, 423
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	581, 909
Csp6I	GTAC	2 cut(s)	294, 318
CviAII	CATG	4 cut(s)	170, 418, 598, 918
CviQI	GTAC	2 cut(s)	294, 318
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	4 cut(s)	21, 370, 620, 1031
DpnII	GATC	4 cut(s)	19, 368, 618, 1029
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	4 cut(s)	121, 537, 626, 632
EarI	CTCTTC	4 cut(s)	121, 537, 626, 632
EciI	GGCGGA	1 cut(s)	724
Eco130I	CCWWGG	2 cut(s)	626, 749
Eco24I	GRGCYC	1 cut(s)	644
Eco31I	GGTCTC	2 cut(s)	574, 935
Eco47I	GGWCC	2 cut(s)	581, 909
Eco88I	CYCGRG	2 cut(s)	197, 1033
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	991
EcoT14I	CCWWGG	2 cut(s)	626, 749
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	2 cut(s)	626, 749
FaeI	CATG	4 cut(s)	173, 421, 601, 921
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	169, 417, 597, 917
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	7 cut(s)	40, 672, 855, 858, 861, 1004, 1007
FokI	GGATG	3 cut(s)	145, 732, 938
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	7 cut(s)	40, 672, 855, 858, 861, 1004, 1007
FspBI	CTAG	3 cut(s)	297, 375, 521
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	7 cut(s)	40, 672, 855, 858, 861, 1004, 1007
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	6 cut(s)	98, 456, 539, 566, 969, 983
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	173, 421, 601, 921
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	7 cut(s)	113, 166, 459, 486, 535, 963, 1036
HpaII	CCGG	6 cut(s)	98, 456, 539, 566, 969, 983
HphI	GGTGA	5 cut(s)	46, 95, 157, 277, 958
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	206, 355, 555, 623, 694, 723
Hpy188III	TCNNGA	5 cut(s)	197, 530, 539, 649, 1033
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	3 cut(s)	113, 130, 1014
HpyCH4V	TGCA	3 cut(s)	601, 839, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	860, 894
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	4 cut(s)	173, 421, 601, 921
HspAI	GCGC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	19, 368, 618, 1029
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	2 cut(s)	313, 894
Lsp1109I	GCAGC	6 cut(s)	51, 683, 841, 869, 872, 1018
LweI	GCATC	1 cut(s)	960
MaeI	CTAG	3 cut(s)	297, 375, 521
MaeIII	GTNAC	3 cut(s)	52, 82, 927
MalI	GATC	4 cut(s)	21, 370, 620, 1031
MboI	GATC	4 cut(s)	19, 368, 618, 1029
MboII	GAAGA	7 cut(s)	17, 108, 495, 554, 643, 649, 664
MflI	RGATCY	3 cut(s)	19, 368, 1029
MhlI	GDGCHC	1 cut(s)	644
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	6 cut(s)	331, 412, 549, 603, 783, 1051
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	4 cut(s)	107, 160, 957, 1045
MmeI	TCCRAC	1 cut(s)	646
Mox20I	TGGCCA	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	3 cut(s)	42, 674, 854
MspI	CCGG	6 cut(s)	98, 456, 539, 566, 969, 983
MspR9I	CCNGG	2 cut(s)	456, 993
MvaI	CCWGG	1 cut(s)	993
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	860, 894
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	4 cut(s)	19, 368, 618, 1029
NlaIII	CATG	4 cut(s)	173, 421, 601, 921
NlaIV	GGNNCC	1 cut(s)	911
NmuCI	GTSAC	2 cut(s)	52, 927
NsbI	TGCGCA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	921
PaeR7I	CTCGAG	1 cut(s)	197
PciI	ACATGT	1 cut(s)	917
PciSI	GCTCTTC	1 cut(s)	632
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	3 cut(s)	459, 486, 535
PkrI	GCNGC	7 cut(s)	41, 673, 856, 859, 862, 1005, 1008
PleI	GAGTC	4 cut(s)	107, 160, 957, 1044
PpsI	GAGTC	4 cut(s)	107, 160, 957, 1044
PpuMI	RGGWCCY	1 cut(s)	909
PscI	ACATGT	1 cut(s)	917
PshAI	GACNNNNGTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	991
PspGI	CCWGG	1 cut(s)	991
PspN4I	GGNNCC	1 cut(s)	911
PspPI	GGNCC	2 cut(s)	581, 909
PspPPI	RGGWCCY	1 cut(s)	909
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	3 cut(s)	19, 368, 1029
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	295, 319
RsaNI	GTAC	2 cut(s)	294, 318
SapI	GCTCTTC	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	7 cut(s)	40, 672, 855, 858, 861, 1004, 1007
Sau3AI	GATC	4 cut(s)	19, 368, 618, 1029
Sau96I	GGNCC	2 cut(s)	581, 909
SchI	GAGTC	4 cut(s)	107, 160, 957, 1045
ScrFI	CCNGG	2 cut(s)	456, 993
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	855
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	581, 909
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 560
SmoI	CTYRAG	2 cut(s)	197, 560
SpeI	ACTAGT	2 cut(s)	296, 374
Sse9I	AATT	6 cut(s)	331, 412, 549, 603, 783, 1051
SspMI	CTAG	3 cut(s)	297, 375, 521
StyD4I	CCNGG	2 cut(s)	454, 991
StyI	CCWWGG	2 cut(s)	626, 749
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	569
TasI	AATT	6 cut(s)	331, 412, 549, 603, 783, 1051
TauI	GCSGC	1 cut(s)	1006
TfiI	GAWTC	3 cut(s)	459, 486, 535
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	52, 927
TseI	GCWGC	6 cut(s)	39, 671, 854, 857, 860, 1006
Tsp45I	GTSAC	2 cut(s)	52, 927
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	1035
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	581, 909
XagI	CCTNNNNNAGG	1 cut(s)	732
XapI	RAATTY	3 cut(s)	331, 603, 783
XceI	RCATGY	1 cut(s)	921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	888
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	3 cut(s)	297, 375, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.