Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

51566625 .. 51569956

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTGGAAGAGATTACCAAAATGGCTGAGGAGGTGAGTTTGAAGAGTACTACTACTACTACTCCTATTCACTTTGTGCTGGTGCATGGTATCAGTGGAGGGGGTTGGTGCTGGTACAAAATCCGGTGTCTCATGGAGAATTCCGGCTACAAAGTCTCCACAGTTGATCTGAAGAGCGCCGGAATCGATCCCGCAAACGCGGATTCGGTCCTCTCTTTCGACGACTACAACAAACCACTCCTTGACTTCCTCTCTTCTCTCCCCGAACACGAACAGGTAGTTTTGGTCGGGCACAGCGCCGGAGGGTTGAGCGTGACGCTGGCGACGCTGAAGTTTCCGAAGAAGATCCGGCTGGCGGTTTATGTGGCGGCGACCATGCTCAAGCATGGGTACACTAGTGAGGAAGATGTTAAAGATGGAGTGCCTAATTTATCCGAATTTGGTGACGTGTACGAATTAGGATTTGAATTAGGAGCCGACAAACCACCAACAAGCGGAATTGTGAAGAAAGAAGTCCAGCGCAAAATCATATATCAAATGAGTCCTCAAGAGGATTCGACACTAGCTGCCATGCTTTTGAGACCAGGACCGCTCCTGGCTATAACGACAGCCCAGTTTAAGGAAGAAAACGATGACCATGACATTGATGCGCTTGAGAAAGTGCCACGTGTCTACGTGAAGACGTTGCAAGATCATGTGGTGAAACCGGCGCAGCAAGATTCGATGGTCAAGAGGTGGCCGCCGGCTGAGGTCTATGTATTGGATAGTGATCACAGTCCCTTCTTCTCCCAGCCGTTTCTGCTCTTTGGATTCCTTGTAAAGGCTGCCGAGGCTTCTCACTGGGAGATTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

284

Amino Acids

31.5

Weight (kDa)

5.2

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	24 - 263	2.5e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	25 - 265	8.8e-18	Alpha/beta hydrolase family
Hydrolase_4	PF12146	26 - 247	8.2e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	672
AccII	CGCG	1 cut(s)	200
AciI	CCGC	7 cut(s)	192, 200, 356, 368, 495, 590, 740
AclWI	GGATC	2 cut(s)	182, 340
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	2 cut(s)	139, 437
AcuI	CTGAAG	2 cut(s)	191, 350
AcvI	CACGTG	1 cut(s)	668
AdeI	CACNNNGTG	1 cut(s)	76
AfaI	GTAC	4 cut(s)	49, 116, 392, 452
AfiI	CCNNNNNNNGG	4 cut(s)	355, 494, 619, 820
AflIII	ACRYGT	2 cut(s)	447, 667
AgsI	TTSAA	2 cut(s)	43, 467
AhlI	ACTAGT	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	583, 594
AluBI	AGCT	1 cut(s)	566
AluI	AGCT	1 cut(s)	566
Alw26I	GTCTC	3 cut(s)	134, 160, 574
AlwI	GGATC	2 cut(s)	182, 340
AoxI	GGCC	1 cut(s)	737
ApeKI	GCWGC	3 cut(s)	566, 712, 824
ApoI	RAATTY	2 cut(s)	139, 437
AspLEI	GCGC	5 cut(s)	179, 299, 522, 652, 712
AspS9I	GGNCC	2 cut(s)	208, 587
AsuHPI	GGTGA	3 cut(s)	46, 455, 712
AvaII	GGWCC	2 cut(s)	208, 587
BaeGI	GKGCMC	1 cut(s)	294
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BbrPI	CACGTG	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	686
BbvCI	CCTCAGC	2 cut(s)	27, 747
BbvI	GCAGC	3 cut(s)	553, 724, 811
BccI	CCATC	2 cut(s)	410, 718
BceAI	ACGGC	1 cut(s)	778
BciT130I	CCWGG	2 cut(s)	585, 596
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	134, 160, 574
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	2 cut(s)	396, 563
BfoI	RGCGCY	2 cut(s)	180, 300
BisI	GCNGC	5 cut(s)	369, 567, 713, 740, 825
BlsI	GCNGC	5 cut(s)	370, 568, 714, 741, 826
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	585, 596
Bme18I	GGWCC	2 cut(s)	208, 587
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	208, 587
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	585, 596
BmrI	ACTGGG	2 cut(s)	607, 850
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	2 cut(s)	607, 850
BpiI	GAAGAC	1 cut(s)	686
Bpu10I	CCTNAGC	2 cut(s)	27, 747
BpuEI	CTTGAG	3 cut(s)	365, 531, 674
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	2 cut(s)	668, 676
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	1 cut(s)	574
BsaJI	CCNNGG	1 cut(s)	828
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 140, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 494, 619, 820
Bse118I	RCCGGY	2 cut(s)	706, 742
Bse1I	ACTGG	2 cut(s)	613, 845
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	585, 596
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	828
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	4 cut(s)	355, 494, 619, 820
BseMII	CTCAG	2 cut(s)	18, 738
BseNI	ACTGG	2 cut(s)	613, 845
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	553, 724, 811
BseYI	CCCAGC	1 cut(s)	789
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	186
BsiSI	CCGG	7 cut(s)	124, 144, 180, 300, 349, 707, 743
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	4 cut(s)	355, 494, 619, 820
BsmAI	GTCTC	3 cut(s)	134, 160, 574
BsmFI	GGGAC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	166, 187, 345, 691, 769
BspACI	CCGC	7 cut(s)	192, 200, 356, 368, 495, 590, 740
BspANI	GGCC	1 cut(s)	739
BspCNI	CTCAG	2 cut(s)	19, 739
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	182, 340
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	574
BsrBI	CCGCTC	1 cut(s)	592
BsrFI	RCCGGY	2 cut(s)	706, 742
BsrI	ACTGG	2 cut(s)	613, 845
BssAI	RCCGGY	2 cut(s)	706, 742
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	5 cut(s)	166, 187, 345, 691, 769
Bst2UI	CCWGG	2 cut(s)	585, 596
Bst4CI	ACNGT	2 cut(s)	163, 776
Bst6I	CTCTTC	4 cut(s)	3, 38, 167, 259
BstBAI	YACGTR	2 cut(s)	668, 676
BstC8I	GCNNGC	3 cut(s)	321, 354, 744
BstDEI	CTNAG	2 cut(s)	27, 747
BstENI	CCTNNNNNAGG	1 cut(s)	818
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	2 cut(s)	180, 300
BstHHI	GCGC	5 cut(s)	179, 299, 522, 652, 712
BstKTI	GATC	5 cut(s)	169, 190, 348, 694, 772
BstMAI	GTCTC	3 cut(s)	134, 160, 574
BstMBI	GATC	5 cut(s)	166, 187, 345, 691, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 799, 830
BstNI	CCWGG	2 cut(s)	585, 596
BstSCI	CCNGG	2 cut(s)	583, 594
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	3 cut(s)	553, 724, 811
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	739
BsuTUI	ATCGAT	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	100, 838
Cac8I	GCNNGC	3 cut(s)	321, 354, 744
CfoI	GCGC	5 cut(s)	179, 299, 522, 652, 712
Cfr10I	RCCGGY	2 cut(s)	706, 742
Cfr13I	GGNCC	2 cut(s)	208, 587
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	2 cut(s)	325, 334
Csp6I	GTAC	4 cut(s)	48, 115, 391, 451
CviAII	CATG	7 cut(s)	86, 133, 376, 386, 571, 638, 695
CviQI	GTAC	4 cut(s)	48, 115, 391, 451
DdeI	CTNAG	2 cut(s)	27, 747
DpnI	GATC	5 cut(s)	168, 189, 347, 693, 771
DpnII	GATC	5 cut(s)	166, 187, 345, 691, 769
DraIII	CACNNNGTG	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	737
Eam1104I	CTCTTC	4 cut(s)	3, 38, 167, 259
EarI	CTCTTC	4 cut(s)	3, 38, 167, 259
Eco31I	GGTCTC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	208, 587
Eco57I	CTGAAG	2 cut(s)	191, 350
Eco72I	CACGTG	1 cut(s)	668
EcoNI	CCTNNNNNAGG	1 cut(s)	818
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	583, 594
FaeI	CATG	7 cut(s)	89, 136, 379, 389, 574, 641, 698
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	7 cut(s)	85, 132, 375, 385, 570, 637, 694
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	5 cut(s)	369, 567, 713, 740, 825
Fsp4HI	GCNGC	5 cut(s)	369, 567, 713, 740, 825
FspBI	CTAG	2 cut(s)	396, 563
GlaI	GCGC	5 cut(s)	178, 298, 521, 651, 711
GluI	GCNGC	5 cut(s)	369, 567, 713, 740, 825
GsaI	CCCAGC	1 cut(s)	793
HaeII	RGCGCY	2 cut(s)	180, 300
HaeIII	GGCC	1 cut(s)	739
HapII	CCGG	7 cut(s)	124, 144, 180, 300, 349, 707, 743
HgaI	GACGC	2 cut(s)	325, 334
HhaI	GCGC	5 cut(s)	179, 299, 522, 652, 712
Hin1II	CATG	7 cut(s)	89, 136, 379, 389, 574, 641, 698
Hin6I	GCGC	5 cut(s)	177, 297, 520, 650, 710
HinP1I	GCGC	5 cut(s)	177, 297, 520, 650, 710
HinfI	GANTC	6 cut(s)	183, 203, 541, 554, 719, 810
HpaII	CCGG	7 cut(s)	124, 144, 180, 300, 349, 707, 743
HphI	GGTGA	3 cut(s)	46, 455, 712
Hpy166II	GTNNAC	3 cut(s)	393, 451, 673
Hpy188I	TCNGA	3 cut(s)	171, 339, 436
Hpy188III	TCNNGA	2 cut(s)	548, 730
Hpy8I	GTNNAC	3 cut(s)	393, 451, 673
Hpy99I	CGWCG	2 cut(s)	224, 328
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	2 cut(s)	163, 776
HpyCH4IV	ACGT	4 cut(s)	447, 667, 675, 683
HpyCH4V	TGCA	2 cut(s)	85, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 799, 830
HpyF3I	CTNAG	2 cut(s)	27, 747
HpySE526I	ACGT	4 cut(s)	447, 667, 675, 683
Hsp92II	CATG	7 cut(s)	89, 136, 379, 389, 574, 641, 698
HspAI	GCGC	5 cut(s)	177, 297, 520, 650, 710
KroI	GCCGGC	1 cut(s)	742
KroNI	GCCGGC	1 cut(s)	744
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	166, 187, 345, 691, 769
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	473, 597
Lsp1109I	GCAGC	3 cut(s)	553, 724, 811
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	396, 563
MaeII	ACGT	4 cut(s)	447, 667, 675, 683
MaeIII	GTNAC	2 cut(s)	313, 443
MalI	GATC	5 cut(s)	168, 189, 347, 693, 771
MbiI	CCGCTC	1 cut(s)	592
MboI	GATC	5 cut(s)	166, 187, 345, 691, 769
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	6 cut(s)	139, 427, 437, 455, 467, 498
MlyI	GAGTC	1 cut(s)	550
MroNI	GCCGGC	1 cut(s)	742
MseI	TTAA	2 cut(s)	411, 618
MspI	CCGG	7 cut(s)	124, 144, 180, 300, 349, 707, 743
MspR9I	CCNGG	2 cut(s)	585, 596
MvaI	CCWGG	2 cut(s)	585, 596
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	325, 799, 830
NaeI	GCCGGC	1 cut(s)	744
NdeII	GATC	5 cut(s)	166, 187, 345, 691, 769
NgoMIV	GCCGGC	1 cut(s)	742
NlaIII	CATG	7 cut(s)	89, 136, 379, 389, 574, 641, 698
NlaIV	GGNNCC	1 cut(s)	475
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	2 cut(s)	313, 443
PciSI	GCTCTTC	1 cut(s)	167
PdiI	GCCGGC	1 cut(s)	744
PfeI	GAWTC	5 cut(s)	183, 203, 554, 719, 810
PkrI	GCNGC	5 cut(s)	370, 568, 714, 741, 826
PleI	GAGTC	1 cut(s)	549
PmaCI	CACGTG	1 cut(s)	668
PmlI	CACGTG	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	549
Ppu21I	YACGTR	2 cut(s)	668, 676
Psp6I	CCWGG	2 cut(s)	583, 594
PspCI	CACGTG	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	2 cut(s)	583, 594
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	208, 587
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	4 cut(s)	49, 116, 392, 452
RsaNI	GTAC	4 cut(s)	48, 115, 391, 451
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	411, 618
SatI	GCNGC	5 cut(s)	369, 567, 713, 740, 825
Sau3AI	GATC	5 cut(s)	166, 187, 345, 691, 769
Sau96I	GGNCC	2 cut(s)	208, 587
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	550
ScrFI	CCNGG	2 cut(s)	585, 596
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	9 cut(s)	36, 279, 450, 568, 670, 678, 686, 737, 753
SfaNI	GCATC	1 cut(s)	637
SinI	GGWCC	2 cut(s)	208, 587
SmlI	CTYRAG	3 cut(s)	380, 546, 653
SmoI	CTYRAG	3 cut(s)	380, 546, 653
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	6 cut(s)	139, 427, 437, 455, 467, 498
SsiI	CCGC	7 cut(s)	192, 200, 356, 368, 495, 590, 740
SspMI	CTAG	2 cut(s)	396, 563
StyD4I	CCNGG	2 cut(s)	583, 594
TaaI	ACNGT	2 cut(s)	163, 776
TaiI	ACGT	4 cut(s)	450, 670, 678, 686
TaqI	TCGA	4 cut(s)	186, 219, 557, 722
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	6 cut(s)	139, 427, 437, 455, 467, 498
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	2 cut(s)	371, 742
TfiI	GAWTC	5 cut(s)	183, 203, 554, 719, 810
Tru1I	TTAA	2 cut(s)	411, 618
Tru9I	TTAA	2 cut(s)	411, 618
TscAI	CASTG	2 cut(s)	100, 845
TseFI	GTSAC	2 cut(s)	313, 443
TseI	GCWGC	3 cut(s)	566, 712, 824
Tsp45I	GTSAC	2 cut(s)	313, 443
TspRI	CASTG	2 cut(s)	100, 845
VpaK11BI	GGWCC	2 cut(s)	208, 587
XagI	CCTNNNNNAGG	1 cut(s)	818
XapI	RAATTY	2 cut(s)	139, 437
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	2 cut(s)	396, 563
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.