Rroxscaffold_4G00280350
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
2915571 .. 2918057
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280350.1

Sequence Viewer

Length: 1290 bp
ATGGAAGACGATGATTGGGATCTTTACGCGGTGGTGCGCAGCTGTAAAGCTGTCACCACCGCCAGAGCCTCGCTTCCTGTAACAGCACCCAATCCGGTTCACCACGACGACTCTTCTGTGCCGTCGTGGATGTGGGATTGGGTGAAGCACGAGGAGGTGGAGACTCATGTCCCGCCAGTCAGGTTTTCCAATCTCGAATTCAGAGCTGGCGATGGATTGGAGGAGTTTTACCAACCCTTTTTCCCAAGCCCCACCATTGATAATACCACCACCACCACCACCACCATCACCCCTGGTACTAGTAGTTATGCTCCTGCTGGTACTATCATTCCAAATTCCCCTACCTCCTTTATCTCTGACTTCGGAGGAGGATCTACTAGTAGTGGCCAGCATCAACTACAACAACAGCAGAATAATTTCATGCCTGCCAATACCAACACCAGCCCTCATTTCAACCCTGGATTCGCACCCGTTTCGGGTTTGGGAAGATTCCCCGAACAACAACTCCTAAAACCTCCCAACCTAGAAACTCCTGAGAATCCTGAAGAGTTAATTCCGAGGCTCAAGCCGGTCTCTTTGGTCGGTCCTGCCATACCGCCCATGCAAATTCCACCGAACCTGATCCGACCAAGGAAGAGGAAGAGCCCGGTCAAGAAGATGGTGTGTCATTTGGCAGCGGACAATCTCTCCTCATCGGATTTGTGGGCGTGGCGGAAATATGGTCAGAAACCTATCAAAGGCTCTCCACATCCAAGGAACTACTACCGCTGCAGCAGCTCAAAGGGTTGCTCTGCCAGAAAGCAAGTGGAGCGAAGCACCGAGGACCCTAACATGTTTGTTGTCACATACTGCGGAGACCACACGCATCCTCGCCCGACTCACAGGAACTCTCTCGCCGGAAGCACCAGGAACAAGGCGGCAGCGACGACTTCAAAAGCGAAAGATCCCGAGTCTCCCTCCGTTCAATTAGTGCCAGCTCAAGGTGGTGATGATGATGAACAAGCTGCCAATAGCAACTCCGGTGATGGAGACAAAGCTAGCGAGGAAGCCGAGGATGAGGAAATGGAAGAAGACGAGGATGATGAGGAGTTTGTGGTGTCCTCGGAGGACATATTCTTGGGGATGAAGCAATTGGGTAGAACTGGTTCAGGAGGCAGCACTCTAGGCTCTTTGGCTGCTGGAACGCCTGGTGATGGTTTTCCAACTAAACAGTCGAATTTGGGGTCTTCTTGGGGGCTAGTTGCTCCTCCTCTGCCGGAGCCACCGTCAGCGGTGGCTGCTAGATTGTGA

Protein Analysis

429

Amino Acids

46.43

Weight (kDa)

5.16

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 233 - 290 1.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012867)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
AccII CGCG 1 cut(s) 29
AclWI GGATC 4 cut(s) 27, 379, 616, 938
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 4 cut(s) 197, 334, 606, 1216
AcuI CTGAAG 1 cut(s) 564
AfaI GTAC 2 cut(s) 298, 322
AfiI CCNNNNNNNGG 4 cut(s) 476, 737, 980, 1193
AflIII ACRYGT 1 cut(s) 831
AgsI TTSAA 3 cut(s) 454, 933, 965
AhlI ACTAGT 2 cut(s) 299, 377
AjnI CCWGG 4 cut(s) 292, 457, 905, 1186
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
AluBI AGCT 7 cut(s) 42, 50, 206, 777, 977, 1004, 1037
AluI AGCT 7 cut(s) 42, 50, 206, 777, 977, 1004, 1037
Alw26I GTCTC 5 cut(s) 155, 577, 849, 957, 1023
AlwI GGATC 4 cut(s) 27, 379, 616, 938
Ama87I CYCGRG 1 cut(s) 947
AoxI GGCC 1 cut(s) 385
ApoI RAATTY 4 cut(s) 197, 334, 606, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
Asp700I GAANNNNTTC 2 cut(s) 416, 1144
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 584, 823
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 7 cut(s) 46, 92, 154, 280, 998, 1034, 1202
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 947
AvaII GGWCC 2 cut(s) 584, 823
BalI TGGCCA 1 cut(s) 387
BanII GRGCYC 1 cut(s) 647
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 3 cut(s) 12, 1077, 1218
BccI CCATC 5 cut(s) 206, 293, 652, 1019, 1187
BceAI ACGGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 456, 490
BciT130I CCWGG 4 cut(s) 294, 459, 907, 1188
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 5 cut(s) 155, 577, 849, 957, 1023
BcuI ACTAGT 2 cut(s) 299, 377
BfaI CTAG 7 cut(s) 300, 378, 524, 1038, 1163, 1238, 1281
BfmI CTRYAG 1 cut(s) 769
Bme1390I CCNGG 5 cut(s) 294, 459, 647, 907, 1188
Bme18I GGWCC 2 cut(s) 584, 823
BmeT110I CYCGRG 1 cut(s) 947
BmgT120I GGNCC 2 cut(s) 584, 823
BmiI GGNNCC 2 cut(s) 825, 1260
BmrFI CCNGG 5 cut(s) 294, 459, 647, 907, 1188
BmsI GCATC 2 cut(s) 400, 874
BmtI GCTAGC 1 cut(s) 1041
BoxI GACNNNNGTC 1 cut(s) 167
BpiI GAAGAC 3 cut(s) 12, 1077, 1218
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpuEI CTTGAG 2 cut(s) 548, 963
BpuMI CCSGG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 577, 849
BsaJI CCNNGG 8 cut(s) 292, 457, 557, 629, 752, 819, 1050, 1101
BsaWI WCCGGW 2 cut(s) 94, 1019
BsaXI ACNNNNNCTCC 6 cut(s) 489, 519, 671, 701, 1250, 1280
Bsc4I CCNNNNNNNGG 4 cut(s) 476, 737, 980, 1193
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 176, 1147
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 4 cut(s) 294, 459, 907, 1188
BseDI CCNNGG 8 cut(s) 292, 457, 557, 629, 752, 819, 1050, 1101
BseGI GGATG 6 cut(s) 135, 748, 865, 1060, 1084, 1128
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 4 cut(s) 476, 737, 980, 1193
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 2 cut(s) 176, 1147
BseRI GAGGAG 7 cut(s) 167, 236, 381, 679, 1100, 1236, 1239
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 947
BsiSI CCGG 6 cut(s) 95, 569, 647, 897, 1020, 1256
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 476, 737, 980, 1193
BsmAI GTCTC 5 cut(s) 155, 577, 849, 957, 1023
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 2 cut(s) 577, 849
BsoBI CYCGRG 1 cut(s) 947
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 4 cut(s) 19, 371, 621, 943
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 825, 1260
BspMAI CTGCAG 1 cut(s) 773
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 4 cut(s) 27, 379, 616, 938
BspQI GCTCTTC 1 cut(s) 635
BspTNI GGTCTC 2 cut(s) 577, 849
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 2 cut(s) 176, 1147
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 8 cut(s) 292, 457, 557, 629, 752, 819, 1050, 1101
BssMI GATC 4 cut(s) 19, 371, 621, 943
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 629, 752
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 4 cut(s) 294, 459, 907, 1188
Bst4CI ACNGT 2 cut(s) 1212, 1266
Bst6I CTCTTC 4 cut(s) 118, 540, 629, 635
BstC8I GCNNGC 5 cut(s) 208, 389, 426, 975, 1039
BstDEI CTNAG 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 735
BstF5I GGATG 6 cut(s) 135, 748, 865, 1060, 1084, 1128
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 4 cut(s) 22, 374, 624, 946
BstMAI GTCTC 5 cut(s) 155, 577, 849, 957, 1023
BstMBI GATC 4 cut(s) 19, 371, 621, 943
BstMWI GCNNNNNNNGC 4 cut(s) 774, 808, 1164, 1277
BstNI CCWGG 4 cut(s) 294, 459, 907, 1188
BstNSI RCATGY 1 cut(s) 835
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 5 cut(s) 292, 457, 645, 905, 1186
BstSFI CTRYAG 1 cut(s) 769
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 3 cut(s) 12, 1077, 1218
BstX2I RGATCY 3 cut(s) 19, 371, 943
BstYI RGATCY 3 cut(s) 19, 371, 943
BsuRI GGCC 1 cut(s) 387
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 6 cut(s) 135, 748, 865, 1060, 1084, 1128
Cac8I GCNNGC 5 cut(s) 208, 389, 426, 975, 1039
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 584, 823
Csp6I GTAC 2 cut(s) 297, 321
CviAII CATG 4 cut(s) 167, 421, 601, 832
CviQI GTAC 2 cut(s) 297, 321
DdeI CTNAG 1 cut(s) 534
DpnI GATC 4 cut(s) 21, 373, 623, 945
DpnII GATC 4 cut(s) 19, 371, 621, 943
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 4 cut(s) 118, 540, 629, 635
EarI CTCTTC 4 cut(s) 118, 540, 629, 635
EciI GGCGGA 1 cut(s) 727
Eco130I CCWWGG 2 cut(s) 629, 752
Eco24I GRGCYC 1 cut(s) 647
Eco31I GGTCTC 2 cut(s) 577, 849
Eco47I GGWCC 2 cut(s) 584, 823
Eco57I CTGAAG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 947
EcoNI CCTNNNNNAGG 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 4 cut(s) 292, 457, 905, 1186
EcoT14I CCWWGG 2 cut(s) 629, 752
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 2 cut(s) 629, 752
FaeI CATG 4 cut(s) 170, 424, 604, 835
FaiI YATR 9 cut(s) 168, 309, 422, 593, 602, 720, 833, 847, 1112
FaqI GGGAC 1 cut(s) 155
FatI CATG 4 cut(s) 166, 420, 600, 831
FauI CCCGC 1 cut(s) 180
FokI GGATG 6 cut(s) 142, 735, 852, 1067, 1091, 1135
FriOI GRGCYC 1 cut(s) 647
FspBI CTAG 7 cut(s) 300, 378, 524, 1038, 1163, 1238, 1281
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 387
HapII CCGG 6 cut(s) 95, 569, 647, 897, 1020, 1256
HhaI GCGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 170, 424, 604, 835
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 7 cut(s) 110, 163, 462, 489, 538, 877, 950
HpaII CCGG 6 cut(s) 95, 569, 647, 897, 1020, 1256
HphI GGTGA 7 cut(s) 46, 92, 154, 280, 998, 1034, 1202
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 8 cut(s) 203, 358, 365, 558, 626, 697, 726, 1105
Hpy188III TCNNGA 6 cut(s) 194, 533, 542, 652, 947, 1149
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 3 cut(s) 110, 127, 928
HpyCH4III ACNGT 2 cut(s) 1212, 1266
HpyCH4V TGCA 2 cut(s) 604, 771
HpyF10VI GCNNNNNNNGC 4 cut(s) 774, 808, 1164, 1277
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 4 cut(s) 170, 424, 604, 835
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 19, 371, 621, 943
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 4 cut(s) 316, 808, 1249, 1258
LweI GCATC 2 cut(s) 400, 874
MaeI CTAG 7 cut(s) 300, 378, 524, 1038, 1163, 1238, 1281
MaeIII GTNAC 3 cut(s) 52, 79, 841
MalI GATC 4 cut(s) 21, 373, 623, 945
MboI GATC 4 cut(s) 19, 371, 621, 943
MfeI CAATTG 1 cut(s) 1130
MflI RGATCY 3 cut(s) 19, 371, 943
MhlI GDGCHC 1 cut(s) 647
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 8 cut(s) 197, 334, 415, 552, 606, 965, 1130, 1216
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 4 cut(s) 104, 157, 871, 959
MmeI TCCRAC 2 cut(s) 649, 1226
Mox20I TGGCCA 1 cut(s) 387
MroXI GAANNNNTTC 2 cut(s) 416, 1144
MscI TGGCCA 1 cut(s) 387
MseI TTAA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 4 cut(s) 42, 677, 768, 1271
MspI CCGG 6 cut(s) 95, 569, 647, 897, 1020, 1256
MspR9I CCNGG 5 cut(s) 294, 459, 647, 907, 1188
MunI CAATTG 1 cut(s) 1130
MvaI CCWGG 4 cut(s) 294, 459, 907, 1188
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 4 cut(s) 774, 808, 1164, 1277
NciI CCSGG 1 cut(s) 647
NdeII GATC 4 cut(s) 19, 371, 621, 943
NheI GCTAGC 1 cut(s) 1037
NlaIII CATG 4 cut(s) 170, 424, 604, 835
NlaIV GGNNCC 2 cut(s) 825, 1260
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 2 cut(s) 52, 841
NsbI TGCGCA 1 cut(s) 38
NspI RCATGY 1 cut(s) 835
PciI ACATGT 1 cut(s) 831
PciSI GCTCTTC 1 cut(s) 635
PdmI GAANNNNTTC 2 cut(s) 416, 1144
PfeI GAWTC 3 cut(s) 462, 489, 538
PleI GAGTC 4 cut(s) 104, 157, 871, 958
PpsI GAGTC 4 cut(s) 104, 157, 871, 958
PpuMI RGGWCCY 1 cut(s) 823
PscI ACATGT 1 cut(s) 831
PshAI GACNNNNGTC 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 4 cut(s) 292, 457, 905, 1186
PspGI CCWGG 4 cut(s) 292, 457, 905, 1186
PspN4I GGNNCC 2 cut(s) 825, 1260
PspPI GGNCC 2 cut(s) 584, 823
PspPPI RGGWCCY 1 cut(s) 823
PsrI GAACNNNNNNTAC 2 cut(s) 1129, 1161
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 3 cut(s) 19, 371, 943
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 2 cut(s) 298, 322
RsaNI GTAC 2 cut(s) 297, 321
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 1 cut(s) 551
Sau3AI GATC 4 cut(s) 19, 371, 621, 943
Sau96I GGNCC 2 cut(s) 584, 823
SchI GAGTC 4 cut(s) 104, 157, 871, 959
ScrFI CCNGG 5 cut(s) 294, 459, 647, 907, 1188
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 2 cut(s) 400, 874
SfcI CTRYAG 1 cut(s) 769
SinI GGWCC 2 cut(s) 584, 823
SmlI CTYRAG 2 cut(s) 563, 978
SmoI CTYRAG 2 cut(s) 563, 978
SpeI ACTAGT 2 cut(s) 299, 377
Sse9I AATT 8 cut(s) 197, 334, 415, 552, 606, 965, 1130, 1216
SspMI CTAG 7 cut(s) 300, 378, 524, 1038, 1163, 1238, 1281
StyD4I CCNGG 5 cut(s) 292, 457, 645, 905, 1186
StyI CCWWGG 2 cut(s) 629, 752
TaaI ACNGT 2 cut(s) 1212, 1266
TaqI TCGA 2 cut(s) 195, 1214
TaqII GACCGA 1 cut(s) 572
TasI AATT 8 cut(s) 197, 334, 415, 552, 606, 965, 1130, 1216
TauI GCSGC 1 cut(s) 920
TfiI GAWTC 3 cut(s) 462, 489, 538
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TseFI GTSAC 2 cut(s) 52, 841
Tsp45I GTSAC 2 cut(s) 52, 841
TspDTI ATGAA 3 cut(s) 409, 1011, 1139
TspGWI ACGGA 1 cut(s) 949
VpaK11BI GGWCC 2 cut(s) 584, 823
XagI CCTNNNNNAGG 1 cut(s) 735
XapI RAATTY 4 cut(s) 197, 334, 606, 1216
XceI RCATGY 1 cut(s) 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 416, 1144
XspI CTAG 7 cut(s) 300, 378, 524, 1038, 1163, 1238, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.