MD01G1210200.v1.1
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
30413680 .. 30415409
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1210200.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGGCAGATGATTGGGATCTTTACGCCGTTGTAAGGGGTTGCAAATCAACCGCCCAAACCACTACAAATACCACCGCCGCCGCCACCACCGCGATCGTACCCACAACCCCTATCCATACACCGTCGGATGAATTCGCAGACGACCCTTTTTGGGATTTGTTGATCAGTTCCGACGAGTTAACCGATCCGTTGTTCTCTTTTCCCGATCTAGACGATCCCAAAGACAATGATTTGCAAGAGCAGCAACAGTCCTTTTTCCCCAACCCCACCACCACCAACAACAACAAGAACAACAATCCTAGCACTAACAACACCACCTTTGGACCTAATAATATTATTCCAATTTCCCCCACTATTTCTGACTTTGGAGGATCTAGTGGTAGTGGCCAACATCACCTCCAACAACATCAACAGCAACATCATGCACAACTCCAACAACAGCTGCAGCAGCAGCAGAACCAGCAACATCATTTGATGCCTGATCATTTCACCCGGGGAATACCGGCTCCTGCTTTTCGAGGAATCTATGGCCAACAACAACAGCAAATGATGCAGCGGGGGTATCAAATTCTTCAACCCCGGCAGCCCCAAAATCAGCAGGGATTTATGAGGCCCGGGTCCATGAATCCCGCTTATCCTCTTCCTCGGCTACCAATAACCATGCCATTGCACACCCCTCGCTCTCAAAGAAGAAGGAGAACCCAGCAAAATAAAAAGGTGTGTGAAGTGAAAGCTGAGGATCTCACGGCCGATTTATGGGCGTGGCGGAAGTACGGCCAAAAACCTATCAAGGGTTCTCCACATCCAAGGAACTATTACCGATGCAGCACCTCAAAAGGGTGTGCGGCGAGGAAGCATGTGGAGCGGAGCACGACGGATCCCAACATCTTCACAGTCACATACTCCGGCGACCACACTCACGCTCGCCCGACTCACCGGAACTCGCTTGCCGGTACCTCCAGGAACAAGCTGTCAGCTGCGTCTAAGTGTCAAAAGCAGCCAATTAACAACGATTCTGGTTCAGCAGCTGTTCCCAACCCCTCGTCTCCCACCACCGGACAACCCTTGACAGTCCAAGCTGAGGCTGTAGCCAATAAGGACAATTCTGACAATTCACTTGACAAAGAAAATGACGAATTTAATGATGACGATGAGGAGATGGATGAGACCGAGTACGGGGATGAGGACGAGGATGATGATGTTGTGATCCCGGACATGGACATGTCGGATGAGATATTCTTGGGGCAGAAGGAACTGGGTAGTACTAGTTCTAGCGGAAGTGGAAGTTCTTCTATGGTGGGTGCTTCCGGTGATAATTTTTTGGATAATGTGCAATCAAGTTTGGGGTCTTCTTGGACTGATGCTAATTGCTCCTCCGCTGCCGGAGCAACCGTTGGCAGTGGTTGCTATTAG

Protein Analysis

471

Amino Acids

51.76

Weight (kDa)

5.08

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 251 - 307 2.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012867)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 953
AccBSI CCGCTC 1 cut(s) 865
AccII CGCG 1 cut(s) 92
AclWI GGATC 8 cut(s) 24, 179, 209, 379, 747, 872, 885, 1201
AcoI YGGCCR 4 cut(s) 385, 529, 747, 775
AcsI RAATTY 3 cut(s) 131, 567, 1136
AfaI GTAC 5 cut(s) 99, 773, 955, 1175, 1264
AfiI CCNNNNNNNGG 9 cut(s) 33, 151, 756, 791, 837, 1055, 1081, 1176, 1216
AflIII ACRYGT 1 cut(s) 1221
AgsI TTSAA 1 cut(s) 575
AhlI ACTAGT 1 cut(s) 1265
AjnI CCWGG 1 cut(s) 959
AluBI AGCT 6 cut(s) 442, 734, 970, 977, 1028, 1079
AluI AGCT 6 cut(s) 442, 734, 970, 977, 1028, 1079
Alw21I GWGCWC 1 cut(s) 872
Alw26I GTCTC 2 cut(s) 1050, 1160
AlwI GGATC 8 cut(s) 24, 179, 209, 379, 747, 872, 885, 1201
AlwNI CAGNNNCTG 1 cut(s) 1028
Ama87I CYCGRG 2 cut(s) 492, 614
AoxI GGCC 5 cut(s) 385, 529, 611, 747, 775
ApoI RAATTY 3 cut(s) 131, 567, 1136
Asp700I GAANNNNTTC 1 cut(s) 1288
Asp718I GGTACC 1 cut(s) 953
AspS9I GGNCC 3 cut(s) 323, 612, 618
AsuC2I CCSGG 6 cut(s) 493, 494, 580, 615, 616, 1211
AsuHPI GGTGA 4 cut(s) 386, 481, 926, 1322
AvaI CYCGRG 2 cut(s) 492, 614
AvaII GGWCC 2 cut(s) 323, 618
BalI TGGCCA 2 cut(s) 387, 531
BamHI GGATCC 1 cut(s) 877
BanI GGYRCC 1 cut(s) 953
BbsI GAAGAC 1 cut(s) 1341
Bbv12I GWGCWC 1 cut(s) 872
BbvCI CCTCAGC 2 cut(s) 735, 1080
BccI CCATC 1 cut(s) 1153
BceAI ACGGC 3 cut(s) 11, 762, 790
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 1 cut(s) 961
BclI TGATCA 2 cut(s) 162, 481
BcnI CCSGG 6 cut(s) 493, 494, 580, 615, 616, 1211
BcoDI GTCTC 2 cut(s) 1050, 1160
BcuI ACTAGT 1 cut(s) 1265
BfaI CTAG 5 cut(s) 209, 300, 375, 1266, 1272
BfmI CTRYAG 2 cut(s) 443, 1086
BmcAI AGTACT 1 cut(s) 1264
Bme1390I CCNGG 7 cut(s) 493, 494, 580, 615, 616, 961, 1211
Bme18I GGWCC 2 cut(s) 323, 618
BmeT110I CYCGRG 2 cut(s) 492, 614
BmgT120I GGNCC 3 cut(s) 323, 612, 618
BmiI GGNNCC 4 cut(s) 507, 619, 879, 955
BmrFI CCNGG 7 cut(s) 493, 494, 580, 615, 616, 961, 1211
BmrI ACTGGG 1 cut(s) 1265
BmsI GCATC 4 cut(s) 465, 540, 812, 1351
BmuI ACTGGG 1 cut(s) 1265
BpiI GAAGAC 1 cut(s) 1341
BpmI CTGGAG 1 cut(s) 943
Bpu10I CCTNAGC 2 cut(s) 735, 1080
BpuMI CCSGG 6 cut(s) 493, 494, 580, 615, 616, 1211
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 1160
BsaJI CCNNGG 6 cut(s) 492, 493, 578, 614, 644, 806
BsaWI WCCGGW 3 cut(s) 936, 1055, 1307
BsaXI ACNNNNNCTCC 4 cut(s) 381, 411, 1377, 1407
Bsc4I CCNNNNNNNGG 9 cut(s) 33, 151, 756, 791, 837, 1055, 1081, 1176, 1216
Bse118I RCCGGY 2 cut(s) 502, 950
Bse1I ACTGG 1 cut(s) 1260
Bse3DI GCAATG 1 cut(s) 665
Bse8I GATNNNNATC 1 cut(s) 15
BseBI CCWGG 1 cut(s) 961
BseDI CCNNGG 6 cut(s) 492, 493, 578, 614, 644, 806
BseGI GGATG 6 cut(s) 133, 802, 1168, 1186, 1198, 1234
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 9 cut(s) 33, 151, 756, 791, 837, 1055, 1081, 1176, 1216
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 726, 1071
BseNI ACTGG 1 cut(s) 1260
BseRI GAGGAG 2 cut(s) 1169, 1363
BseX3I CGGCCG 1 cut(s) 747
BseYI CCCAGC 1 cut(s) 702
Bsh1236I CGCG 1 cut(s) 92
Bsh1285I CGRYCG 2 cut(s) 96, 750
BshFI GGCC 5 cut(s) 387, 531, 613, 749, 777
BshNI GGYRCC 1 cut(s) 953
BsiEI CGRYCG 2 cut(s) 96, 750
BsiHKAI GWGCWC 1 cut(s) 872
BsiHKCI CYCGRG 2 cut(s) 492, 614
BslI CCNNNNNNNGG 9 cut(s) 33, 151, 756, 791, 837, 1055, 1081, 1176, 1216
BsmAI GTCTC 2 cut(s) 1050, 1160
BsmBI CGTCTC 1 cut(s) 1050
BsnI GGCC 5 cut(s) 387, 531, 613, 749, 777
Bso31I GGTCTC 1 cut(s) 1160
BsoBI CYCGRG 2 cut(s) 492, 614
Bsp1286I GDGCHC 1 cut(s) 872
BspANI GGCC 5 cut(s) 387, 531, 613, 749, 777
BspCNI CTCAG 2 cut(s) 727, 1072
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 4 cut(s) 507, 619, 879, 955
BspMAI CTGCAG 1 cut(s) 447
BspPI GGATC 8 cut(s) 24, 179, 209, 379, 747, 872, 885, 1201
BspT107I GGYRCC 1 cut(s) 953
BspTNI GGTCTC 1 cut(s) 1160
BsrBI CCGCTC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 665
BsrFI RCCGGY 2 cut(s) 502, 950
BsrI ACTGG 1 cut(s) 1260
BssAI RCCGGY 2 cut(s) 502, 950
BssECI CCNNGG 6 cut(s) 492, 493, 578, 614, 644, 806
BssT1I CCWWGG 1 cut(s) 806
Bst2UI CCWGG 1 cut(s) 961
Bst4CI ACNGT 5 cut(s) 123, 249, 895, 1072, 1393
Bst6I CTCTTC 1 cut(s) 645
BstAPI GCANNNNNTGC 2 cut(s) 550, 1404
BstC8I GCNNGC 2 cut(s) 925, 948
BstDEI CTNAG 3 cut(s) 735, 984, 1080
BstF5I GGATG 6 cut(s) 133, 802, 1168, 1186, 1198, 1234
BstFNI CGCG 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 1050, 1160
BstMCI CGRYCG 2 cut(s) 96, 750
BstMWI GCNNNNNNNGC 9 cut(s) 89, 241, 448, 451, 460, 550, 862, 1385, 1404
BstNI CCWGG 1 cut(s) 961
BstNSI RCATGY 2 cut(s) 860, 1225
BstSCI CCNGG 7 cut(s) 491, 492, 578, 613, 614, 959, 1209
BstSFI CTRYAG 2 cut(s) 443, 1086
BstUI CGCG 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 1341
BstX2I RGATCY 4 cut(s) 16, 371, 739, 877
BstYI RGATCY 4 cut(s) 16, 371, 739, 877
BstZI CGGCCG 1 cut(s) 747
BsuRI GGCC 5 cut(s) 387, 531, 613, 749, 777
BtsCI GGATG 6 cut(s) 133, 802, 1168, 1186, 1198, 1234
BtsI GCAGTG 1 cut(s) 1405
BtsIMutI CAGTG 1 cut(s) 1405
Cac8I GCNNGC 2 cut(s) 925, 948
CaiI CAGNNNCTG 1 cut(s) 1028
Cfr10I RCCGGY 2 cut(s) 502, 950
Cfr13I GGNCC 3 cut(s) 323, 612, 618
Cfr9I CCCGGG 2 cut(s) 492, 614
CseI GACGC 1 cut(s) 969
Csp6I GTAC 5 cut(s) 98, 772, 954, 1174, 1263
CviAII CATG 6 cut(s) 422, 622, 661, 857, 1216, 1222
CviQI GTAC 5 cut(s) 98, 772, 954, 1174, 1263
DdeI CTNAG 3 cut(s) 735, 984, 1080
EaeI YGGCCR 4 cut(s) 385, 529, 747, 775
EagI CGGCCG 1 cut(s) 747
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 781
EclXI CGGCCG 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 806
Eco31I GGTCTC 1 cut(s) 1160
Eco47I GGWCC 2 cut(s) 323, 618
Eco52I CGGCCG 1 cut(s) 747
Eco88I CYCGRG 2 cut(s) 492, 614
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 959
EcoT14I CCWWGG 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 806
Esp3I CGTCTC 1 cut(s) 1050
FaeI CATG 6 cut(s) 425, 625, 664, 860, 1219, 1225
FatI CATG 6 cut(s) 421, 621, 660, 856, 1215, 1221
FauI CCCGC 2 cut(s) 549, 637
FbaI TGATCA 2 cut(s) 162, 481
FokI GGATG 6 cut(s) 140, 789, 1175, 1193, 1205, 1241
FspBI CTAG 5 cut(s) 209, 300, 375, 1266, 1272
GsaI CCCAGC 1 cut(s) 706
GsuI CTGGAG 1 cut(s) 943
HaeIII GGCC 5 cut(s) 387, 531, 613, 749, 777
HgaI GACGC 1 cut(s) 969
Hin1II CATG 6 cut(s) 425, 625, 664, 860, 1219, 1225
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 4 cut(s) 522, 625, 931, 1013
HpaI GTTAAC 1 cut(s) 180
HphI GGTGA 4 cut(s) 386, 481, 926, 1322
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 5 cut(s) 127, 172, 361, 1108, 1228
Hpy188III TCNNGA 2 cut(s) 203, 209
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 3 cut(s) 127, 176, 877
HpyAV CCTTC 2 cut(s) 687, 1243
HpyCH4III ACNGT 5 cut(s) 123, 249, 895, 1072, 1393
HpyCH4V TGCA 8 cut(s) 42, 235, 425, 445, 553, 670, 825, 1333
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 241, 448, 451, 460, 550, 862, 1385, 1404
HpyF3I CTNAG 3 cut(s) 735, 984, 1080
Hsp92II CATG 6 cut(s) 425, 625, 664, 860, 1219, 1225
KpnI GGTACC 1 cut(s) 957
Ksp22I TGATCA 2 cut(s) 162, 481
KspAI GTTAAC 1 cut(s) 180
LmnI GCTCC 5 cut(s) 511, 862, 867, 1376, 1385
LweI GCATC 4 cut(s) 465, 540, 812, 1351
MaeI CTAG 5 cut(s) 209, 300, 375, 1266, 1272
MaeIII GTNAC 1 cut(s) 895
MbiI CCGCTC 1 cut(s) 865
MboII GAAGA 6 cut(s) 563, 632, 702, 880, 1281, 1341
MflI RGATCY 4 cut(s) 16, 371, 739, 877
MhlI GDGCHC 1 cut(s) 872
MlsI TGGCCA 2 cut(s) 387, 531
MluCI AATT 9 cut(s) 131, 342, 567, 1002, 1102, 1111, 1136, 1315, 1366
MluNI TGGCCA 2 cut(s) 387, 531
MlyI GAGTC 1 cut(s) 925
MmeI TCCRAC 5 cut(s) 105, 195, 424, 457, 1206
Mox20I TGGCCA 2 cut(s) 387, 531
MroXI GAANNNNTTC 1 cut(s) 1288
MscI TGGCCA 2 cut(s) 387, 531
MseI TTAA 3 cut(s) 179, 1005, 1140
MslI CAYNNNNRTG 1 cut(s) 1220
Msp20I TGGCCA 2 cut(s) 387, 531
MspA1I CMGCKG 5 cut(s) 442, 556, 977, 1028, 1379
MspR9I CCNGG 7 cut(s) 493, 494, 580, 615, 616, 961, 1211
MvaI CCWGG 1 cut(s) 961
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 9 cut(s) 89, 241, 448, 451, 460, 550, 862, 1385, 1404
NciI CCSGG 6 cut(s) 493, 494, 580, 615, 616, 1211
NlaIII CATG 6 cut(s) 425, 625, 664, 860, 1219, 1225
NlaIV GGNNCC 4 cut(s) 507, 619, 879, 955
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 895
NspI RCATGY 2 cut(s) 860, 1225
PciI ACATGT 1 cut(s) 1221
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 1288
PfeI GAWTC 3 cut(s) 522, 625, 1013
PfoI TCCNGGA 2 cut(s) 959, 1209
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PscI ACATGT 1 cut(s) 1221
Psp6I CCWGG 1 cut(s) 959
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 1 cut(s) 959
PspN4I GGNNCC 4 cut(s) 507, 619, 879, 955
PspPI GGNCC 3 cut(s) 323, 612, 618
PsrI GAACNNNNNNTAC 2 cut(s) 1252, 1284
PstI CTGCAG 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 4 cut(s) 16, 371, 739, 877
PvuI CGATCG 1 cut(s) 96
PvuII CAGCTG 3 cut(s) 442, 977, 1028
RsaI GTAC 5 cut(s) 99, 773, 955, 1175, 1264
RsaNI GTAC 5 cut(s) 98, 772, 954, 1174, 1263
RseI CAYNNNNRTG 1 cut(s) 1220
SaqAI TTAA 3 cut(s) 179, 1005, 1140
Sau96I GGNCC 3 cut(s) 323, 612, 618
ScaI AGTACT 1 cut(s) 1264
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 7 cut(s) 493, 494, 580, 615, 616, 961, 1211
SduI GDGCHC 1 cut(s) 872
SfaNI GCATC 4 cut(s) 465, 540, 812, 1351
SfcI CTRYAG 2 cut(s) 443, 1086
SinI GGWCC 2 cut(s) 323, 618
SmaI CCCGGG 2 cut(s) 494, 616
SmiMI CAYNNNNRTG 1 cut(s) 1220
SpeI ACTAGT 1 cut(s) 1265
Sse9I AATT 9 cut(s) 131, 342, 567, 1002, 1102, 1111, 1136, 1315, 1366
SspI AATATT 1 cut(s) 334
SspMI CTAG 5 cut(s) 209, 300, 375, 1266, 1272
StyD4I CCNGG 7 cut(s) 491, 492, 578, 613, 614, 959, 1209
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 5 cut(s) 123, 249, 895, 1072, 1393
TaqI TCGA 1 cut(s) 517
TaqII GACCGA 1 cut(s) 1184
TasI AATT 9 cut(s) 131, 342, 567, 1002, 1102, 1111, 1136, 1315, 1366
TatI WGTACW 1 cut(s) 1262
TauI GCSGC 3 cut(s) 80, 83, 848
TfiI GAWTC 3 cut(s) 522, 625, 1013
Tru1I TTAA 3 cut(s) 179, 1005, 1140
Tru9I TTAA 3 cut(s) 179, 1005, 1140
TscAI CASTG 1 cut(s) 1405
TseFI GTSAC 1 cut(s) 895
Tsp45I GTSAC 1 cut(s) 895
TspDTI ATGAA 2 cut(s) 144, 638
TspGWI ACGGA 2 cut(s) 177, 890
TspMI CCCGGG 2 cut(s) 492, 614
TspRI CASTG 1 cut(s) 1405
VpaK11BI GGWCC 2 cut(s) 323, 618
XapI RAATTY 3 cut(s) 131, 567, 1136
XbaI TCTAGA 1 cut(s) 208
XceI RCATGY 2 cut(s) 860, 1225
XmaI CCCGGG 2 cut(s) 492, 614
XmnI GAANNNNTTC 1 cut(s) 1288
XspI CTAG 5 cut(s) 209, 300, 375, 1266, 1272
ZrmI AGTACT 1 cut(s) 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.