Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

28979421 .. 28981847

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCAGATGATTGGGATCTTTACGCTGTGGTGAGGAGTTGCAAATCAGCCACCCACGCCACCACCACTAACACTTCCGCCGCCGGCGCACCCACAAATCCCATTACCCCACCCTCCGCGGAGGAAGAATACTCTTTTTGGGAATGGTTGAAATCCGAGGAGGAAACTGACCCATTATTCTCTTTCCCCAATCTCCTCGAGCCCAGAGCCAATGCTTTCCAAGAGCTGCAACAGTTTTACGAACCCCTTTTGCCCAACCCCACCACCACCAACAATCCCAGCACTAACAACAACACCTTTGTTCCTCCTATTATTCCAAATTCCCCCATTATTTCTGACTTTGGAGGATCTGCCAGTAGTGGCCAACATCACCTACAACAGCAACAGCATCATTTTCTGCCAACCAACACCCCCGCGAGCCCTCATTTCAACCCTGCCATCTTTCCTCCTGGTTTTGGAGAATTCCATGGCCAACAACAGCCGCTTCTGCTACCCAAACCAGAGACTCAAATTCTACCCCAACAGCTCCCAACGCAGCAGGGTTTTATGAGGCCTCGGGCCATGGTTCCCGCTCTTCCTCCTCCTCTTCCTCGTGCACCATTCACCATGCCAATCAACTCCCCCCGGCCAAGAAAAAGGAAGTGTCAGCAGAAAAGACAGGTTTGTCAAGTAAGCGCAGAGAATCTCTCCGCCGATTTATGGGCATGGCGTAAGTACGGCCAAAAACCTATCAAGGGTTCTCCTCATCCAAGGAACTATTACCGCTGCAGTAGCTCCAAAGGATGTTCAGCGAGAAAACAAGTGGAGCGGAGCACGGCGGACCCCAACATCTTCGTCGTCACATACACAGGCGACCATACTCACCCTCGTCCAACGCATCGAAACTCCCTTGCTGGCAGCACCAGAAACAAGTTATCAGCGATGGCGGGTCAAAACCAGCCCATCAACAATGACTCCGGTTCACCACCAGCCCAAGCTGATCAAGACGTTGTTGCCAATAACGTCAATTCTGACAATTCACTTGACAAAGAAAATGAGGAACTTGATGAGGATGAGGAGGAAAGGGATGAGAACGAGATCGAGGACGAGGACGTGGAGGAGGACGATGTTCTGATCCCGAACACAGCCATGTCGGATGAGATATTCTTGGGGCTGAAGCAATTGGGTTGTACTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

393

Amino Acids

43.64

Weight (kDa)

5.07

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	663
AccBSI	CCGCTC	2 cut(s)	572, 808
AccII	CGCG	2 cut(s)	119, 416
AclWI	GGATC	3 cut(s)	24, 355, 1108
AcoI	YGGCCR	4 cut(s)	361, 469, 626, 718
AcsI	RAATTY	3 cut(s)	319, 461, 510
AcuI	CTGAAG	1 cut(s)	1175
AfaI	GTAC	2 cut(s)	716, 1171
AfiI	CCNNNNNNNGG	3 cut(s)	455, 699, 734
AgsI	TTSAA	2 cut(s)	151, 430
AhlI	ACTAGT	1 cut(s)	1172
AjiI	CACGTC	1 cut(s)	1093
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	226, 526, 774, 977
AluI	AGCT	4 cut(s)	226, 526, 774, 977
Alw21I	GWGCWC	2 cut(s)	598, 815
Alw26I	GTCTC	1 cut(s)	497
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	3 cut(s)	24, 355, 1108
Ama87I	CYCGRG	2 cut(s)	197, 555
AoxI	GGCC	6 cut(s)	361, 469, 551, 558, 626, 718
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	4 cut(s)	226, 535, 765, 897
ApoI	RAATTY	3 cut(s)	319, 461, 510
AspLEI	GCGC	2 cut(s)	89, 677
AspS9I	GGNCC	2 cut(s)	558, 820
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	5 cut(s)	43, 362, 595, 854, 954
AvaI	CYCGRG	2 cut(s)	197, 555
AvaII	GGWCC	1 cut(s)	820
BaeGI	GKGCMC	1 cut(s)	598
BalI	TGGCCA	2 cut(s)	363, 471
BanII	GRGCYC	2 cut(s)	204, 422
BauI	CACGAG	1 cut(s)	591
Bbv12I	GWGCWC	2 cut(s)	598, 815
BbvI	GCAGC	4 cut(s)	213, 547, 752, 909
BccI	CCATC	3 cut(s)	446, 916, 950
BceAI	ACGGC	2 cut(s)	733, 831
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	979
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	497
BcuI	ACTAGT	1 cut(s)	1172
BfaI	CTAG	1 cut(s)	1173
BfmI	CTRYAG	1 cut(s)	766
BisI	GCNGC	6 cut(s)	81, 227, 482, 536, 766, 898
BlsI	GCNGC	6 cut(s)	82, 228, 483, 537, 767, 899
Bme1390I	CCNGG	2 cut(s)	450, 625
Bme18I	GGWCC	1 cut(s)	820
BmeT110I	CYCGRG	2 cut(s)	197, 555
BmgBI	CACGTC	1 cut(s)	1093
BmgT120I	GGNCC	2 cut(s)	558, 820
BmiI	GGNNCC	2 cut(s)	567, 822
BmrFI	CCNGG	2 cut(s)	450, 625
BmsI	GCATC	2 cut(s)	397, 886
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	7 cut(s)	117, 156, 466, 554, 561, 623, 749
BsaWI	WCCGGW	1 cut(s)	956
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	3 cut(s)	455, 699, 734
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	7 cut(s)	117, 156, 466, 554, 561, 623, 749
BseGI	GGATG	5 cut(s)	745, 788, 1057, 1072, 1141
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	455, 699, 734
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	8 cut(s)	49, 173, 185, 570, 573, 732, 1070, 1112
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	4 cut(s)	213, 547, 752, 909
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	2 cut(s)	119, 416
BshFI	GGCC	6 cut(s)	363, 471, 553, 560, 628, 720
BsiHKAI	GWGCWC	2 cut(s)	598, 815
BsiHKCI	CYCGRG	2 cut(s)	197, 555
BsiSI	CCGG	3 cut(s)	84, 625, 957
BslI	CCNNNNNNNGG	3 cut(s)	455, 699, 734
BsmAI	GTCTC	1 cut(s)	497
BsnI	GGCC	6 cut(s)	363, 471, 553, 560, 628, 720
BsoBI	CYCGRG	2 cut(s)	197, 555
Bsp1286I	GDGCHC	4 cut(s)	204, 422, 598, 815
Bsp143I	GATC	5 cut(s)	16, 347, 979, 1077, 1113
Bsp19I	CCATGG	2 cut(s)	466, 561
BspANI	GGCC	6 cut(s)	363, 471, 553, 560, 628, 720
BspFNI	CGCG	2 cut(s)	119, 416
BspLI	GGNNCC	2 cut(s)	567, 822
BspMAI	CTGCAG	1 cut(s)	770
BspPI	GGATC	3 cut(s)	24, 355, 1108
BspQI	GCTCTTC	1 cut(s)	579
BsrBI	CCGCTC	2 cut(s)	572, 808
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	7 cut(s)	117, 156, 466, 554, 561, 623, 749
BssMI	GATC	5 cut(s)	16, 347, 979, 1077, 1113
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	3 cut(s)	466, 561, 749
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	579, 591
BstC8I	GCNNGC	3 cut(s)	85, 418, 895
BstDSI	CCRYGG	3 cut(s)	117, 466, 561
BstF5I	GGATG	5 cut(s)	745, 788, 1057, 1072, 1141
BstFNI	CGCG	2 cut(s)	119, 416
BstHHI	GCGC	2 cut(s)	89, 677
BstKTI	GATC	5 cut(s)	19, 350, 982, 1080, 1116
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	5 cut(s)	16, 347, 979, 1077, 1113
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 86, 487, 532, 771
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	448, 623
BstSFI	CTRYAG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	2 cut(s)	119, 416
BstV1I	GCAGC	4 cut(s)	213, 547, 752, 909
BstX2I	RGATCY	2 cut(s)	16, 347
BstYI	RGATCY	2 cut(s)	16, 347
BsuRI	GGCC	6 cut(s)	363, 471, 553, 560, 628, 720
BtgI	CCRYGG	3 cut(s)	117, 466, 561
BtgZI	GCGATG	1 cut(s)	935
BtrI	CACGTC	1 cut(s)	1093
BtsCI	GGATG	5 cut(s)	745, 788, 1057, 1072, 1141
Cac8I	GCNNGC	3 cut(s)	85, 418, 895
CfoI	GCGC	2 cut(s)	89, 677
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	558, 820
Cfr42I	CCGCGG	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	715, 1170
CviAII	CATG	5 cut(s)	467, 562, 607, 705, 1129
CviQI	GTAC	2 cut(s)	715, 1170
DpnI	GATC	5 cut(s)	18, 349, 981, 1079, 1115
DpnII	GATC	5 cut(s)	16, 347, 979, 1077, 1113
DrdI	GACNNNNNNGTC	1 cut(s)	663
DseDI	GACNNNNNNGTC	1 cut(s)	663
EaeI	YGGCCR	4 cut(s)	361, 469, 626, 718
Eam1104I	CTCTTC	2 cut(s)	579, 591
EarI	CTCTTC	2 cut(s)	579, 591
EciI	GGCGGA	3 cut(s)	67, 679, 833
Eco130I	CCWWGG	3 cut(s)	466, 561, 749
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	204, 422
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	1 cut(s)	1175
Eco88I	CYCGRG	2 cut(s)	197, 555
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	466, 561, 749
EcoT38I	GRGCYC	2 cut(s)	204, 422
ErhI	CCWWGG	3 cut(s)	466, 561, 749
FaeI	CATG	5 cut(s)	470, 565, 610, 708, 1132
FaiI	YATR	9 cut(s)	468, 548, 563, 608, 700, 706, 844, 858, 1130
FatI	CATG	5 cut(s)	466, 561, 606, 704, 1128
FauI	CCCGC	3 cut(s)	421, 577, 919
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	6 cut(s)	81, 227, 482, 536, 766, 898
FokI	GGATG	5 cut(s)	732, 795, 1064, 1079, 1148
FriOI	GRGCYC	2 cut(s)	204, 422
Fsp4HI	GCNGC	6 cut(s)	81, 227, 482, 536, 766, 898
FspBI	CTAG	1 cut(s)	1173
GlaI	GCGC	2 cut(s)	88, 676
GluI	GCNGC	6 cut(s)	81, 227, 482, 536, 766, 898
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	6 cut(s)	363, 471, 553, 560, 628, 720
HapII	CCGG	3 cut(s)	84, 625, 957
HhaI	GCGC	2 cut(s)	89, 677
Hin1II	CATG	5 cut(s)	470, 565, 610, 708, 1132
Hin6I	GCGC	2 cut(s)	87, 675
HinP1I	GCGC	2 cut(s)	87, 675
HinfI	GANTC	3 cut(s)	505, 682, 953
HpaII	CCGG	3 cut(s)	84, 625, 957
HphI	GGTGA	5 cut(s)	43, 362, 595, 854, 954
Hpy166II	GTNNAC	2 cut(s)	596, 962
Hpy188I	TCNGA	5 cut(s)	157, 337, 1012, 1113, 1135
Hpy188III	TCNNGA	2 cut(s)	983, 1117
Hpy8I	GTNNAC	2 cut(s)	596, 962
Hpy99I	CGWCG	1 cut(s)	839
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	3 cut(s)	987, 1002, 1092
HpyCH4V	TGCA	4 cut(s)	42, 229, 596, 768
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 86, 487, 532, 771
HpySE526I	ACGT	3 cut(s)	987, 1002, 1092
Hsp92II	CATG	5 cut(s)	470, 565, 610, 708, 1132
HspAI	GCGC	2 cut(s)	87, 675
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	979
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	5 cut(s)	16, 347, 979, 1077, 1113
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	4 cut(s)	531, 779, 805, 810
Lsp1109I	GCAGC	4 cut(s)	213, 547, 752, 909
LweI	GCATC	2 cut(s)	397, 886
MaeI	CTAG	1 cut(s)	1173
MaeII	ACGT	3 cut(s)	987, 1002, 1092
MaeIII	GTNAC	1 cut(s)	838
MalI	GATC	5 cut(s)	18, 349, 981, 1079, 1115
MbiI	CCGCTC	2 cut(s)	572, 808
MboI	GATC	5 cut(s)	16, 347, 979, 1077, 1113
MboII	GAAGA	4 cut(s)	137, 566, 578, 823
MfeI	CAATTG	1 cut(s)	1160
MflI	RGATCY	2 cut(s)	16, 347
MhlI	GDGCHC	4 cut(s)	204, 422, 598, 815
MlsI	TGGCCA	2 cut(s)	363, 471
MluCI	AATT	6 cut(s)	319, 461, 510, 1006, 1015, 1160
MluNI	TGGCCA	2 cut(s)	363, 471
MlyI	GAGTC	2 cut(s)	499, 947
MmeI	TCCRAC	2 cut(s)	896, 1113
Mox20I	TGGCCA	2 cut(s)	363, 471
MreI	CGCCGGCG	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	2 cut(s)	363, 471
MslI	CAYNNNNRTG	1 cut(s)	1127
Msp20I	TGGCCA	2 cut(s)	363, 471
MspA1I	CMGCKG	2 cut(s)	119, 765
MspI	CCGG	3 cut(s)	84, 625, 957
MspR9I	CCNGG	2 cut(s)	450, 625
MunI	CAATTG	1 cut(s)	1160
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	2 cut(s)	119, 416
MwoI	GCNNNNNNNGC	5 cut(s)	56, 86, 487, 532, 771
NaeI	GCCGGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	2 cut(s)	466, 561
NdeII	GATC	5 cut(s)	16, 347, 979, 1077, 1113
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	470, 565, 610, 708, 1132
NlaIV	GGNNCC	2 cut(s)	567, 822
NmuCI	GTSAC	1 cut(s)	838
PaeR7I	CTCGAG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	579
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	682
PkrI	GCNGC	6 cut(s)	82, 228, 483, 537, 767, 899
PleI	GAGTC	2 cut(s)	499, 947
PpsI	GAGTC	2 cut(s)	499, 947
Psp6I	CCWGG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	567, 822
PspPI	GGNCC	2 cut(s)	558, 820
PspXI	VCTCGAGB	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	16, 347
RsaI	GTAC	2 cut(s)	716, 1171
RsaNI	GTAC	2 cut(s)	715, 1170
RseI	CAYNNNNRTG	1 cut(s)	1127
SacII	CCGCGG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	579
SatI	GCNGC	6 cut(s)	81, 227, 482, 536, 766, 898
Sau3AI	GATC	5 cut(s)	16, 347, 979, 1077, 1113
Sau96I	GGNCC	2 cut(s)	558, 820
SchI	GAGTC	2 cut(s)	499, 947
ScrFI	CCNGG	2 cut(s)	450, 625
SduI	GDGCHC	4 cut(s)	204, 422, 598, 815
SfaNI	GCATC	2 cut(s)	397, 886
SfcI	CTRYAG	1 cut(s)	766
Sfr274I	CTCGAG	1 cut(s)	197
Sfr303I	CCGCGG	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	820
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	1127
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	1172
Sse9I	AATT	6 cut(s)	319, 461, 510, 1006, 1015, 1160
SseBI	AGGCCT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	1173
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	448, 623
StyI	CCWWGG	3 cut(s)	466, 561, 749
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	3 cut(s)	990, 1005, 1095
TaqI	TCGA	3 cut(s)	198, 880, 1080
TasI	AATT	6 cut(s)	319, 461, 510, 1006, 1015, 1160
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	2 cut(s)	83, 484
TfiI	GAWTC	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	838
TseI	GCWGC	4 cut(s)	226, 535, 765, 897
Tsp45I	GTSAC	1 cut(s)	838
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	820
XapI	RAATTY	3 cut(s)	319, 461, 510
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.