Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012867

Physical Location & Seq

Genomic Coordinates Forward (+)

65773731 .. 65774872

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG431500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAGATGATGATTGGGATCTTTACGCGGTGGTGCGCAGCTGTAAAGCTGCCACCACCGCCAGAGCCTCGCTTCCTGTTGTAACAGCACCCAATCCGGTTCACCACGACGACTCTTCTGTGCCGTCGTGGATGTGGGATTGGGTGAAGCACGAGGAGGTGGAGACTCATGTCCCGCCAGTCAGGTTTTCCAATCTCGAGTTCAGAGCTGGCGATGGATTGGAGGAGTTTTACCAACCCTTTTTCCCAAGCCCCACCATTGATAATACCACCGCCGCCACCACCACCACCATCTCCACTGGTACTAGTAGTTATGCTCCTGCTGGTACTATTATTCCAAATTCCTCTACCTCCTTTATCTCTGACTTTGGAGGAGGATCTACTAGTAGTGGCCAACATCAACTACAACAACAGCAGAATAATTTCATGCCTGCGAATACCAACACCAGTCCTCATTTCAACCCCGGATTCGCACCCGTTTCGGGTTTGGGAAGATTCCCCGAACAACAACTCCTAAAACCGCCCAAGCTAGAAACTTCTGAGAATCCGGAAGAGTTAATTCCGAGGCTCAAGCCGGTCTCTTTGGTCGGTCCTGCCATACCGCCCATGCAAATTCCACCGAACCTGATCCGACCAAGGAAGAGGAAGAGCCCAGTCAAGAAGATGGTGTGTCATTTGGCAGCGGACAATCTCTCCTCATCGGATTTGTGGGCGTGGCGGAAATATGGAACTACTACCGCTGCAGCAGCTCAAAGGGTTGCTCTGCCAGAAAGCAAGTGGAGCGAAGCACCGAGGACCCTAACATGTTTGTTGTCACATACTGCGGAGACCACACGCATCCTCGCCCGACTCACAGGAACTCTCTCGCCGGAAGCACCAGGAACAAGGCGGCAGCGACGACTTCAAAAGCGAAAGATCCCGAGTCTCCCTCCGTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0019932 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033993 GO:0035556 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

WRKY

Protein Analysis

313

Amino Acids

34.44

Weight (kDa)

8.99

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52830
fragaria_vesca	FvH4_7g30460
malus_domestica	MD01G1210200.v1.1 MD07G1280300.v1.1
prunus_persica	Prupe.2G302500_v2.0.a1
pyrus_communis	pycom01g22070 pycom07g25490
rosa_chinensis	RchiOBHm_Chr1g0378621
rosa_laevigata	RLG00000026418
rosa_multiflora	Rmu_sc0002395.1_g000012
rosa_roxburghii	Rroxscaffold_4G00280350
rosa_rugosa	Rorug01G0410000 Rorug01G0410100
rosa_samantha	Rh1AG431500 Rh1BG389800 Rh1CG403100 Rh1DG421000
rosa_wichuraiana	Rw1G037800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	38
AccII	CGCG	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	547
AclWI	GGATC	4 cut(s)	27, 385, 622, 910
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	340, 612
AfaI	GTAC	2 cut(s)	304, 328
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	460, 905, 937
AhlI	ACTAGT	2 cut(s)	305, 383
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	5 cut(s)	42, 50, 209, 529, 749
AluI	AGCT	5 cut(s)	42, 50, 209, 529, 749
Alw26I	GTCTC	4 cut(s)	158, 583, 821, 929
AlwI	GGATC	4 cut(s)	27, 385, 622, 910
Ama87I	CYCGRG	2 cut(s)	197, 919
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	7 cut(s)	39, 50, 680, 740, 743, 746, 892
ApoI	RAATTY	2 cut(s)	340, 612
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	590, 795
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	2 cut(s)	95, 157
AvaI	CYCGRG	2 cut(s)	197, 919
AvaII	GGWCC	2 cut(s)	590, 795
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	37, 51, 692, 727, 755, 758, 904
BccI	CCATC	3 cut(s)	209, 299, 658
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	462, 496
BciT130I	CCWGG	1 cut(s)	879
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	4 cut(s)	158, 583, 821, 929
BcuI	ACTAGT	2 cut(s)	305, 383
BfaI	CTAG	3 cut(s)	306, 384, 530
BfmI	CTRYAG	1 cut(s)	741
BisI	GCNGC	9 cut(s)	40, 51, 276, 681, 741, 744, 747, 890, 893
BlsI	GCNGC	9 cut(s)	41, 52, 277, 682, 742, 745, 748, 891, 894
Bme1390I	CCNGG	2 cut(s)	465, 879
Bme18I	GGWCC	2 cut(s)	590, 795
BmeT110I	CYCGRG	2 cut(s)	197, 919
BmgT120I	GGNCC	2 cut(s)	590, 795
BmiI	GGNNCC	1 cut(s)	797
BmrFI	CCNGG	2 cut(s)	465, 879
BmrI	ACTGGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	846
BmuI	ACTGGG	1 cut(s)	647
BoxI	GACNNNNGTC	1 cut(s)	170
BplI	GAGNNNNNCTC	1 cut(s)	913
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	2 cut(s)	583, 821
BsaJI	CCNNGG	4 cut(s)	463, 563, 635, 791
BsaWI	WCCGGW	2 cut(s)	97, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	495, 525, 677, 707
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	4 cut(s)	179, 304, 447, 653
Bse8I	GATNNNNATC	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	4 cut(s)	463, 563, 635, 791
BseGI	GGATG	2 cut(s)	138, 837
BseJI	GATNNNNATC	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	4 cut(s)	179, 304, 447, 653
BseRI	GAGGAG	4 cut(s)	170, 239, 387, 685
BseXI	GCAGC	7 cut(s)	37, 51, 692, 727, 755, 758, 904
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	197, 919
BsiSI	CCGG	5 cut(s)	98, 465, 548, 575, 869
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	4 cut(s)	158, 583, 821, 929
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	2 cut(s)	583, 821
BsoBI	CYCGRG	2 cut(s)	197, 919
Bsp1286I	GDGCHC	1 cut(s)	653
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	19, 377, 627, 915
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	532
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	797
BspMAI	CTGCAG	1 cut(s)	745
BspPI	GGATC	4 cut(s)	27, 385, 622, 910
BspQI	GCTCTTC	1 cut(s)	641
BspTNI	GGTCTC	2 cut(s)	583, 821
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	4 cut(s)	179, 304, 447, 653
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	4 cut(s)	463, 563, 635, 791
BssMI	GATC	4 cut(s)	19, 377, 627, 915
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	879
Bst6I	CTCTTC	4 cut(s)	121, 546, 635, 641
BstC8I	GCNNGC	2 cut(s)	211, 432
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	138, 837
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	4 cut(s)	22, 380, 630, 918
BstMAI	GTCTC	4 cut(s)	158, 583, 821, 929
BstMBI	GATC	4 cut(s)	19, 377, 627, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 746, 780
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	807
BstPAI	GACNNNNGTC	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	463, 877
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	7 cut(s)	37, 51, 692, 727, 755, 758, 904
BstX2I	RGATCY	3 cut(s)	19, 377, 915
BstYI	RGATCY	3 cut(s)	19, 377, 915
BsuRI	GGCC	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	138, 837
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	211, 432
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	590, 795
Csp6I	GTAC	2 cut(s)	303, 327
CviAII	CATG	4 cut(s)	170, 427, 607, 804
CviQI	GTAC	2 cut(s)	303, 327
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	4 cut(s)	21, 379, 629, 917
DpnII	GATC	4 cut(s)	19, 377, 627, 915
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	4 cut(s)	121, 546, 635, 641
EarI	CTCTTC	4 cut(s)	121, 546, 635, 641
EciI	GGCGGA	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	653
Eco31I	GGTCTC	2 cut(s)	583, 821
Eco47I	GGWCC	2 cut(s)	590, 795
Eco88I	CYCGRG	2 cut(s)	197, 919
EcoO109I	RGGNCCY	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	635
FaeI	CATG	4 cut(s)	173, 430, 610, 807
FaiI	YATR	8 cut(s)	171, 315, 428, 599, 608, 726, 805, 819
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	169, 426, 606, 803
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	9 cut(s)	40, 51, 276, 681, 741, 744, 747, 890, 893
FokI	GGATG	2 cut(s)	145, 824
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	9 cut(s)	40, 51, 276, 681, 741, 744, 747, 890, 893
FspBI	CTAG	3 cut(s)	306, 384, 530
FspI	TGCGCA	1 cut(s)	38
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	9 cut(s)	40, 51, 276, 681, 741, 744, 747, 890, 893
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	5 cut(s)	98, 465, 548, 575, 869
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	173, 430, 610, 807
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	7 cut(s)	113, 166, 468, 495, 544, 849, 922
HpaII	CCGG	5 cut(s)	98, 465, 548, 575, 869
HphI	GGTGA	2 cut(s)	95, 157
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	206, 364, 541, 564, 632, 703
Hpy188III	TCNNGA	4 cut(s)	197, 548, 658, 919
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	3 cut(s)	113, 130, 900
HpyCH4V	TGCA	2 cut(s)	610, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 746, 780
HpyF3I	CTNAG	1 cut(s)	540
Hsp92II	CATG	4 cut(s)	173, 430, 610, 807
HspAI	GCGC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	19, 377, 627, 915
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	2 cut(s)	322, 780
Lsp1109I	GCAGC	7 cut(s)	37, 51, 692, 727, 755, 758, 904
LweI	GCATC	1 cut(s)	846
MaeI	CTAG	3 cut(s)	306, 384, 530
MaeIII	GTNAC	2 cut(s)	82, 813
MalI	GATC	4 cut(s)	21, 379, 629, 917
MboI	GATC	4 cut(s)	19, 377, 627, 915
MboII	GAAGA	7 cut(s)	17, 108, 504, 563, 652, 658, 673
MflI	RGATCY	3 cut(s)	19, 377, 915
MhlI	GDGCHC	1 cut(s)	653
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	5 cut(s)	340, 421, 558, 612, 937
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	4 cut(s)	107, 160, 843, 931
MmeI	TCCRAC	1 cut(s)	655
Mox20I	TGGCCA	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	3 cut(s)	42, 683, 740
MspI	CCGG	5 cut(s)	98, 465, 548, 575, 869
MspR9I	CCNGG	2 cut(s)	465, 879
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	59, 746, 780
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	19, 377, 627, 915
NlaIII	CATG	4 cut(s)	173, 430, 610, 807
NlaIV	GGNNCC	1 cut(s)	797
NmuCI	GTSAC	1 cut(s)	813
NsbI	TGCGCA	1 cut(s)	38
NspI	RCATGY	1 cut(s)	807
PaeR7I	CTCGAG	1 cut(s)	197
PciI	ACATGT	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	468, 495, 544
PkrI	GCNGC	9 cut(s)	41, 52, 277, 682, 742, 745, 748, 891, 894
PleI	GAGTC	4 cut(s)	107, 160, 843, 930
PpsI	GAGTC	4 cut(s)	107, 160, 843, 930
PpuMI	RGGWCCY	1 cut(s)	795
PscI	ACATGT	1 cut(s)	803
PshAI	GACNNNNGTC	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	1 cut(s)	797
PspPI	GGNCC	2 cut(s)	590, 795
PspPPI	RGGWCCY	1 cut(s)	795
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	3 cut(s)	19, 377, 915
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	2 cut(s)	304, 328
RsaNI	GTAC	2 cut(s)	303, 327
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	9 cut(s)	40, 51, 276, 681, 741, 744, 747, 890, 893
Sau3AI	GATC	4 cut(s)	19, 377, 627, 915
Sau96I	GGNCC	2 cut(s)	590, 795
SchI	GAGTC	4 cut(s)	107, 160, 843, 931
ScrFI	CCNGG	2 cut(s)	465, 879
SduI	GDGCHC	1 cut(s)	653
SetI	ASST	9 cut(s)	44, 52, 162, 188, 211, 353, 531, 627, 751
SfaNI	GCATC	1 cut(s)	846
SfcI	CTRYAG	1 cut(s)	741
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	590, 795
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 569
SmoI	CTYRAG	2 cut(s)	197, 569
SpeI	ACTAGT	2 cut(s)	305, 383
Sse9I	AATT	5 cut(s)	340, 421, 558, 612, 937
SspMI	CTAG	3 cut(s)	306, 384, 530
StyD4I	CCNGG	2 cut(s)	463, 877
StyI	CCWWGG	1 cut(s)	635
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	5 cut(s)	340, 421, 558, 612, 937
TauI	GCSGC	2 cut(s)	278, 892
TfiI	GAWTC	3 cut(s)	468, 495, 544
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	813
TseI	GCWGC	7 cut(s)	39, 50, 680, 740, 743, 746, 892
Tsp45I	GTSAC	1 cut(s)	813
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	921
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	590, 795
XapI	RAATTY	2 cut(s)	340, 612
XceI	RCATGY	1 cut(s)	807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	3 cut(s)	306, 384, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.