RchiOBHm_Chr1g0378621
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
65036412 .. 65037865
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60203

Sequence Viewer

Length: 1281 bp
ATGGAAGATGATGATTGGGATCTTTACGCGGTGGTGCGCAGCTGTAAAGCTGTCACCACCGCCAGAGCCTCGCTTCCTGTTGTAACAGCACCCAATCCGGTTCACCACGACAACTCTTCTGTGCCGTCGTGGATGTGGGATTGGGTGAAGCACGAGGAGGTGGAGACTCATGTCCCGCCAGTCAGGTTTTCCAATCTCGAGTTCAGAGCTGGCGATGGATTGGAGGAGTTTTACCAACCCTTTTTCCCAAGCCCCACCATTGATAATACCACCGCCACCACCATCACCACTGGTACTAGTAGTTATGCTCCTGCTGGTACTATTATTCCAAATTCCTCTACCTCCTTTATCTCTGACTTTGGAGGAGGATCTACTAGTAGTGGCCAACATCAACTACAACAACAGCAGAATAATTTCATGCCTGCGAATACCAACACCAGTCCTCATTTCAACCCCGGATTCGCACCCGTTTCGGGTTTGGGAAGATTCCCGGAACAACAACTCCTAAAACCGCCCAAGCTAGAAACTCCTGAGAATCTGGAAGAGTTAATTCCGAGGCTCAAGCCGGTCTCTTTGGTCGGTCCTGCCATACCGCCCATGCAAATTCCACCGAACCTGATCCGACCAAGGAAGAGGAAGAGCCCAGTCAAGAAGATGGTGTGTCATTTGGCAGCGGACAATCTCTCCTCATCGGATTTGTGGGCGTGGCGGAAATATGGTCAGAAACCTATAAAAGGCTCTCCACATCCAAGGAACTACTACCGCTGCAGCAGCTCAAAGGGTTGCTCTGCCAGAAAGCAAGTGGAGCGAAGCACCGAGGACCCTAACATGTTTGTTGTCACATACTGCGGAGACCACTCGCATCCTCGCCCGACTCACCGGAACTCTCTCGCCGGAAGCACCAGGAACAAGGCGGCAGCGACGACTTCAAAAGCGAAAGATCCCGAGTCTCCCTCCGTTCAATTAGTGCCAGCTCAAGGTGGTGATGATGATGAACAAGCTGCCAATAGCAACTCCGGTGATGGAGACAAAGCTAGCGAGGAAGCCGAGGATGAGGAAATGGAAGAAGACGAGGATGATGAGGAGTTTGTGGTGTCCTCGGAGGACATATTCTTGGGGATGAAGCAATTGGGTAGAACTGGTTCAGGAGGCAGCACTCTAGGGTCTTTGGCTGCTGGAACTTCTGGTGATGGTTTTTCGACTAAACAGTCGAATTTGGGGTCTTCTTGGGGAGCTAGTTGCTCCTCCTCTGCCGGAGCCACCGTCAGCGGTGGCTGCTAG

Protein Analysis

426

Amino Acids

45.83

Weight (kDa)

5.28

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 232 - 289 3.7e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012867)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1207
Acc16I TGCGCA 1 cut(s) 38
AccII CGCG 1 cut(s) 29
AclWI GGATC 4 cut(s) 27, 376, 613, 935
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 3 cut(s) 331, 603, 1213
AfaI GTAC 2 cut(s) 295, 319
AfiI CCNNNNNNNGG 3 cut(s) 473, 734, 977
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 3 cut(s) 451, 930, 962
AhlI ACTAGT 2 cut(s) 296, 374
AjnI CCWGG 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 486, 518
AluBI AGCT 9 cut(s) 42, 50, 209, 520, 774, 974, 1001, 1034, 1235
AluI AGCT 9 cut(s) 42, 50, 209, 520, 774, 974, 1001, 1034, 1235
Alw26I GTCTC 5 cut(s) 158, 574, 846, 954, 1020
AlwI GGATC 4 cut(s) 27, 376, 613, 935
Ama87I CYCGRG 2 cut(s) 197, 944
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 3 cut(s) 331, 603, 1213
ArsI GACNNNNNNTTYG 2 cut(s) 1205, 1237
Asp700I GAANNNNTTC 2 cut(s) 413, 1141
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 581, 820
AsuC2I CCSGG 2 cut(s) 456, 491
AsuHPI GGTGA 8 cut(s) 46, 95, 157, 277, 869, 995, 1031, 1199
AsuNHI GCTAGC 1 cut(s) 1034
AvaI CYCGRG 2 cut(s) 197, 944
AvaII GGWCC 2 cut(s) 581, 820
BalI TGGCCA 1 cut(s) 384
BanII GRGCYC 1 cut(s) 644
BauI CACGAG 1 cut(s) 152
BbsI GAAGAC 2 cut(s) 1074, 1215
BccI CCATC 5 cut(s) 209, 290, 649, 1016, 1184
BceAI ACGGC 1 cut(s) 109
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BciT130I CCWGG 1 cut(s) 904
BcnI CCSGG 2 cut(s) 456, 491
BcoDI GTCTC 5 cut(s) 158, 574, 846, 954, 1020
BcuI ACTAGT 2 cut(s) 296, 374
BfaI CTAG 7 cut(s) 297, 375, 521, 1035, 1160, 1236, 1279
BfmI CTRYAG 1 cut(s) 766
Bme1390I CCNGG 3 cut(s) 456, 491, 904
Bme18I GGWCC 2 cut(s) 581, 820
BmeT110I CYCGRG 2 cut(s) 197, 944
BmgT120I GGNCC 2 cut(s) 581, 820
BmiI GGNNCC 2 cut(s) 822, 1258
BmrFI CCNGG 3 cut(s) 456, 491, 904
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 1 cut(s) 871
BmtI GCTAGC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 638
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 1074, 1215
BplI GAGNNNNNCTC 2 cut(s) 938, 970
BpuEI CTTGAG 2 cut(s) 545, 960
BpuMI CCSGG 2 cut(s) 456, 491
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 574, 846
BsaJI CCNNGG 7 cut(s) 454, 554, 626, 749, 816, 1047, 1098
BsaWI WCCGGW 3 cut(s) 97, 879, 1016
BsaXI ACNNNNNCTCC 6 cut(s) 486, 516, 668, 698, 1248, 1278
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 734, 977
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 5 cut(s) 179, 295, 438, 644, 1144
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 7 cut(s) 454, 554, 626, 749, 816, 1047, 1098
BseGI GGATG 6 cut(s) 138, 745, 862, 1057, 1081, 1125
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 473, 734, 977
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 5 cut(s) 179, 295, 438, 644, 1144
BseRI GAGGAG 7 cut(s) 170, 239, 378, 676, 1097, 1234, 1237
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 384
BsiHKCI CYCGRG 2 cut(s) 197, 944
BsiSI CCGG 8 cut(s) 98, 456, 491, 566, 880, 894, 1017, 1254
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 473, 734, 977
BsmAI GTCTC 5 cut(s) 158, 574, 846, 954, 1020
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 384
Bso31I GGTCTC 2 cut(s) 574, 846
BsoBI CYCGRG 2 cut(s) 197, 944
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 4 cut(s) 19, 368, 618, 940
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 822, 1258
BspMAI CTGCAG 1 cut(s) 770
BspOI GCTAGC 1 cut(s) 1038
BspPI GGATC 4 cut(s) 27, 376, 613, 935
BspQI GCTCTTC 1 cut(s) 632
BspTNI GGTCTC 2 cut(s) 574, 846
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 5 cut(s) 179, 295, 438, 644, 1144
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 7 cut(s) 454, 554, 626, 749, 816, 1047, 1098
BssMI GATC 4 cut(s) 19, 368, 618, 940
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 2 cut(s) 626, 749
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 2 cut(s) 1209, 1264
Bst6I CTCTTC 4 cut(s) 121, 537, 626, 632
BstC8I GCNNGC 4 cut(s) 211, 423, 972, 1036
BstDEI CTNAG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 732
BstF5I GGATG 6 cut(s) 138, 745, 862, 1057, 1081, 1125
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 4 cut(s) 22, 371, 621, 943
BstMAI GTCTC 5 cut(s) 158, 574, 846, 954, 1020
BstMBI GATC 4 cut(s) 19, 368, 618, 940
BstMWI GCNNNNNNNGC 3 cut(s) 771, 805, 1275
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 1 cut(s) 832
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 454, 489, 902
BstSFI CTRYAG 1 cut(s) 766
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 1074, 1215
BstX2I RGATCY 3 cut(s) 19, 368, 940
BstYI RGATCY 3 cut(s) 19, 368, 940
BsuRI GGCC 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 6 cut(s) 138, 745, 862, 1057, 1081, 1125
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 4 cut(s) 211, 423, 972, 1036
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 565
Cfr13I GGNCC 2 cut(s) 581, 820
Csp6I GTAC 2 cut(s) 294, 318
CviAII CATG 4 cut(s) 170, 418, 598, 829
CviQI GTAC 2 cut(s) 294, 318
DdeI CTNAG 1 cut(s) 531
DpnI GATC 4 cut(s) 21, 370, 620, 942
DpnII GATC 4 cut(s) 19, 368, 618, 940
DrdI GACNNNNNNGTC 1 cut(s) 1207
DseDI GACNNNNNNGTC 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 4 cut(s) 121, 537, 626, 632
EarI CTCTTC 4 cut(s) 121, 537, 626, 632
EciI GGCGGA 1 cut(s) 724
Eco130I CCWWGG 2 cut(s) 626, 749
Eco24I GRGCYC 1 cut(s) 644
Eco31I GGTCTC 2 cut(s) 574, 846
Eco47I GGWCC 2 cut(s) 581, 820
Eco88I CYCGRG 2 cut(s) 197, 944
EcoNI CCTNNNNNAGG 1 cut(s) 732
EcoO109I RGGNCCY 1 cut(s) 820
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 626, 749
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 2 cut(s) 626, 749
FaeI CATG 4 cut(s) 173, 421, 601, 832
FaqI GGGAC 1 cut(s) 158
FatI CATG 4 cut(s) 169, 417, 597, 828
FauI CCCGC 1 cut(s) 183
FokI GGATG 6 cut(s) 145, 732, 849, 1064, 1088, 1132
FriOI GRGCYC 1 cut(s) 644
FspBI CTAG 7 cut(s) 297, 375, 521, 1035, 1160, 1236, 1279
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 384
HapII CCGG 8 cut(s) 98, 456, 491, 566, 880, 894, 1017, 1254
HhaI GCGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 173, 421, 601, 832
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 6 cut(s) 166, 459, 486, 535, 874, 947
HpaII CCGG 8 cut(s) 98, 456, 491, 566, 880, 894, 1017, 1254
HphI GGTGA 8 cut(s) 46, 95, 157, 277, 869, 995, 1031, 1199
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 7 cut(s) 206, 355, 555, 623, 694, 723, 1102
Hpy188III TCNNGA 6 cut(s) 197, 530, 539, 649, 944, 1146
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 2 cut(s) 130, 925
HpyCH4III ACNGT 2 cut(s) 1209, 1264
HpyCH4V TGCA 2 cut(s) 601, 768
HpyF10VI GCNNNNNNNGC 3 cut(s) 771, 805, 1275
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 4 cut(s) 173, 421, 601, 832
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 4 cut(s) 19, 368, 618, 940
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 5 cut(s) 313, 805, 1232, 1247, 1256
LweI GCATC 1 cut(s) 871
MaeI CTAG 7 cut(s) 297, 375, 521, 1035, 1160, 1236, 1279
MaeIII GTNAC 3 cut(s) 52, 82, 838
MalI GATC 4 cut(s) 21, 370, 620, 942
MboI GATC 4 cut(s) 19, 368, 618, 940
MfeI CAATTG 1 cut(s) 1127
MflI RGATCY 3 cut(s) 19, 368, 940
MhlI GDGCHC 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 7 cut(s) 331, 412, 549, 603, 962, 1127, 1213
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 3 cut(s) 160, 868, 956
MmeI TCCRAC 1 cut(s) 646
Mox20I TGGCCA 1 cut(s) 384
MroXI GAANNNNTTC 2 cut(s) 413, 1141
MscI TGGCCA 1 cut(s) 384
MseI TTAA 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 4 cut(s) 42, 674, 765, 1269
MspI CCGG 8 cut(s) 98, 456, 491, 566, 880, 894, 1017, 1254
MspR9I CCNGG 3 cut(s) 456, 491, 904
MunI CAATTG 1 cut(s) 1127
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 771, 805, 1275
NciI CCSGG 2 cut(s) 456, 491
NdeII GATC 4 cut(s) 19, 368, 618, 940
NheI GCTAGC 1 cut(s) 1034
NlaIII CATG 4 cut(s) 173, 421, 601, 832
NlaIV GGNNCC 2 cut(s) 822, 1258
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 2 cut(s) 52, 838
NsbI TGCGCA 1 cut(s) 38
NspI RCATGY 1 cut(s) 832
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 828
PciSI GCTCTTC 1 cut(s) 632
PdmI GAANNNNTTC 2 cut(s) 413, 1141
PfeI GAWTC 3 cut(s) 459, 486, 535
PfoI TCCNGGA 1 cut(s) 489
PleI GAGTC 3 cut(s) 160, 868, 955
PpsI GAGTC 3 cut(s) 160, 868, 955
PpuMI RGGWCCY 1 cut(s) 820
PscI ACATGT 1 cut(s) 828
PshAI GACNNNNGTC 1 cut(s) 170
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 2 cut(s) 822, 1258
PspPI GGNCC 2 cut(s) 581, 820
PspPPI RGGWCCY 1 cut(s) 820
PsrI GAACNNNNNNTAC 2 cut(s) 1126, 1158
PstI CTGCAG 1 cut(s) 770
PsuI RGATCY 3 cut(s) 19, 368, 940
PvuII CAGCTG 1 cut(s) 42
RsaI GTAC 2 cut(s) 295, 319
RsaNI GTAC 2 cut(s) 294, 318
SapI GCTCTTC 1 cut(s) 632
SaqAI TTAA 1 cut(s) 548
Sau3AI GATC 4 cut(s) 19, 368, 618, 940
Sau96I GGNCC 2 cut(s) 581, 820
SchI GAGTC 3 cut(s) 160, 868, 956
ScrFI CCNGG 3 cut(s) 456, 491, 904
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 1 cut(s) 871
SfcI CTRYAG 1 cut(s) 766
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 2 cut(s) 581, 820
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 3 cut(s) 197, 560, 975
SmoI CTYRAG 3 cut(s) 197, 560, 975
SpeI ACTAGT 2 cut(s) 296, 374
Sse9I AATT 7 cut(s) 331, 412, 549, 603, 962, 1127, 1213
SspMI CTAG 7 cut(s) 297, 375, 521, 1035, 1160, 1236, 1279
StyD4I CCNGG 3 cut(s) 454, 489, 902
StyI CCWWGG 2 cut(s) 626, 749
TaaI ACNGT 2 cut(s) 1209, 1264
TaqI TCGA 3 cut(s) 198, 1199, 1211
TaqII GACCGA 1 cut(s) 569
TasI AATT 7 cut(s) 331, 412, 549, 603, 962, 1127, 1213
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 3 cut(s) 459, 486, 535
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 52, 838
Tsp45I GTSAC 2 cut(s) 52, 838
TspDTI ATGAA 3 cut(s) 406, 1008, 1136
TspGWI ACGGA 1 cut(s) 946
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 581, 820
XagI CCTNNNNNAGG 1 cut(s) 732
XapI RAATTY 3 cut(s) 331, 603, 1213
XceI RCATGY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 2 cut(s) 413, 1141
XspI CTAG 7 cut(s) 297, 375, 521, 1035, 1160, 1236, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.