AT5G53950

Protein CUP-SHAPED COTYLEDON

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
21901704 .. 21903854
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53950.1

Sequence Viewer

Length: 1128 bp
ATGGACATTCCGTATTACCACTACGACCATGGCGGAGACAGCCAATATCTTCCACCGGGTTTCAGGTTTCATCCCACGGACGAAGAGCTCATCACTCATTACCTTCTCCGCAAAGTCCTCGACGGTTGCTTCTCAAGCCGTGCCATCGCAGAAGTTGATCTCAACAAGTGTGAGCCTTGGCAACTTCCCGGGAGAGCTAAGATGGGAGAGAAAGAATGGTACTTCTTTAGCCTCCGTGACCGGAAGTATCCGACGGGACTGAGAACTAACAGAGCAACTGAGGCTGGTTACTGGAAAGCTACCGGAAAAGACAGAGAGATCTTTAGTTCAAAGACTTGTGCACTTGTTGGGATGAAGAAGACTCTTGTCTTTTACAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGGATGAATGGGTGATCTCTAGGGTTTTCCAGAAAACCACTTTAGCTAGCACCGGAGCCGTCTCCGAAGGAGGAGGAGGAGGAGGAGCAACTGTGAGCGTAAGCAGCGGTACTGGTCCATCTAAAAAGACGAAAGTACCCTCAACAATCTCAAGAAACTATCAAGAACAACCAAGCTCTCCTTCCTCCGTCTCACTCCCACCTCTCCTGGATCCGACCACTACCCTCGGCTACACCGACAGCAGTTGCTCCTACGACAGCCGTAGCACCAACACAACCGTCACAGCCAGCGCAATAACCGAGCACGTGTCCTGTTTCTCCACTGTCCCTACTACTACTACGGCCTTGGGCTTAGACGTTAACTCATTCAGCCGTCTTCCACCGCCGCTAGGGTTTGACTTTGACCCTTTTCCTCGTTTCGTTTCTAGAAACGTCTCGACTCAATCTAACTTCAGATCGTTCCAAGAAAACTTCAATCAATTTCCTTACTTTGGATCGTCTTCTGCATCGACTATGACCTCCGCCGTTAATCTGCCTTCTTTCCAAGGCGGCGGAGGCGTCTCCGGGATGAATTACTGGCTACCGGCGACTGCCGAAGAGAATGAGTCAAAGGTCGGTGTGCTTCATGCTGGACTTGACTGTATTTGGAACTACTGA

Protein Analysis

375

Amino Acids

41.43

Weight (kDa)

8.59

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 144 4.9e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 33, 109, 579, 854, 857, 993, 1020, 1023
AclWI GGATC 3 cut(s) 677, 690, 973
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 907
AcvI CACGTG 1 cut(s) 778
AcyI GRCGYC 1 cut(s) 1029
AfaI GTAC 3 cut(s) 221, 583, 609
AfiI CCNNNNNNNGG 2 cut(s) 860, 962
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 3 cut(s) 330, 434, 946
AjnI CCWGG 1 cut(s) 678
AjuI GAANNNNNNNTTGG 2 cut(s) 637, 669
AluBI AGCT 7 cut(s) 88, 197, 299, 386, 468, 518, 648
AluI AGCT 7 cut(s) 88, 197, 299, 386, 468, 518, 648
Alw21I GWGCWC 4 cut(s) 90, 343, 388, 777
Alw26I GTCTC 5 cut(s) 30, 538, 667, 910, 1036
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 3 cut(s) 677, 690, 973
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 813
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 576
ApoI RAATTY 1 cut(s) 440
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 587
AsuC2I CCSGG 4 cut(s) 57, 189, 190, 1036
AsuHPI GGTGA 1 cut(s) 496
AsuNHI GCTAGC 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BamHI GGATCC 1 cut(s) 682
BanII GRGCYC 2 cut(s) 90, 388
BbrPI CACGTG 1 cut(s) 778
BbsI GAAGAC 3 cut(s) 365, 839, 963
Bbv12I GWGCWC 4 cut(s) 90, 343, 388, 777
BbvI GCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 152, 196, 598
BceAI ACGGC 6 cut(s) 123, 515, 717, 828, 828, 980
BcgI CGANNNNNNTGC 4 cut(s) 100, 134, 407, 441
BciT130I CCWGG 1 cut(s) 680
BciVI GTATCC 1 cut(s) 258
BcnI CCSGG 4 cut(s) 57, 189, 190, 1036
BcoDI GTCTC 5 cut(s) 30, 538, 667, 910, 1036
BfaI CTAG 4 cut(s) 492, 519, 860, 897
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 318
BisI GCNGC 3 cut(s) 577, 857, 1021
BlsI GCNGC 3 cut(s) 578, 858, 1022
Bme1390I CCNGG 5 cut(s) 57, 189, 190, 680, 1036
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 529, 684
BmrFI CCNGG 5 cut(s) 57, 189, 190, 680, 1036
BmsI GCATC 1 cut(s) 986
BmtI GCTAGC 1 cut(s) 522
BoxI GACNNNNGTC 1 cut(s) 365
BpiI GAAGAC 3 cut(s) 365, 839, 963
BpuEI CTTGAG 3 cut(s) 118, 445, 607
BpuMI CCSGG 4 cut(s) 57, 189, 190, 1036
BsaAI YACGTR 1 cut(s) 778
BsaHI GRCGYC 1 cut(s) 1029
BsaJI CCNNGG 8 cut(s) 28, 75, 176, 188, 471, 697, 816, 1015
BsaWI WCCGGW 3 cut(s) 240, 302, 524
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 962
Bse118I RCCGGY 1 cut(s) 1054
Bse1I ACTGG 3 cut(s) 296, 589, 1052
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 8 cut(s) 28, 75, 176, 188, 471, 697, 816, 1015
BseGI GGATG 4 cut(s) 70, 357, 481, 1044
BseLI CCNNNNNNNGG 2 cut(s) 860, 962
BseMII CTCAG 2 cut(s) 251, 270
BseNI ACTGG 3 cut(s) 296, 589, 1052
BseRI GAGGAG 5 cut(s) 558, 561, 564, 567, 570
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 588
BshFI GGCC 1 cut(s) 815
BsiHKAI GWGCWC 4 cut(s) 90, 343, 388, 777
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 7 cut(s) 56, 189, 241, 303, 525, 1035, 1055
BslFI GGGAC 2 cut(s) 270, 782
BslI CCNNNNNNNGG 2 cut(s) 860, 962
BsmAI GTCTC 5 cut(s) 30, 538, 667, 910, 1036
BsmBI CGTCTC 4 cut(s) 538, 667, 910, 1036
BsmFI GGGAC 2 cut(s) 270, 782
BsnI GGCC 1 cut(s) 815
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 4 cut(s) 90, 343, 388, 777
Bsp143I GATC 6 cut(s) 157, 318, 486, 682, 926, 965
Bsp19I CCATGG 1 cut(s) 28
BspACI CCGC 8 cut(s) 33, 109, 579, 854, 857, 993, 1020, 1023
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 2 cut(s) 252, 271
BspLI GGNNCC 2 cut(s) 529, 684
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 3 cut(s) 677, 690, 973
BspQI GCTCTTC 2 cut(s) 78, 376
BsrFI RCCGGY 1 cut(s) 1054
BsrI ACTGG 3 cut(s) 296, 589, 1052
BssAI RCCGGY 1 cut(s) 1054
BssECI CCNNGG 8 cut(s) 28, 75, 176, 188, 471, 697, 816, 1015
BssMI GATC 6 cut(s) 157, 318, 486, 682, 926, 965
BssNI GRCGYC 1 cut(s) 1029
BssT1I CCWWGG 5 cut(s) 28, 176, 471, 816, 1015
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 5 cut(s) 125, 565, 751, 796, 1112
Bst6I CTCTTC 4 cut(s) 78, 376, 395, 1062
BstACI GRCGYC 1 cut(s) 1029
BstBAI YACGTR 1 cut(s) 778
BstC8I GCNNGC 2 cut(s) 520, 760
BstDEI CTNAG 4 cut(s) 198, 260, 279, 823
BstDSI CCRYGG 2 cut(s) 28, 75
BstF5I GGATG 4 cut(s) 70, 357, 481, 1044
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 6 cut(s) 160, 321, 489, 685, 929, 968
BstMAI GTCTC 5 cut(s) 30, 538, 667, 910, 1036
BstMBI GATC 6 cut(s) 157, 318, 486, 682, 926, 965
BstMWI GCNNNNNNNGC 5 cut(s) 39, 135, 281, 576, 1026
BstNI CCWGG 1 cut(s) 680
BstPAI GACNNNNGTC 1 cut(s) 365
BstSCI CCNGG 5 cut(s) 55, 187, 188, 678, 1034
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 3 cut(s) 365, 839, 963
BstX2I RGATCY 2 cut(s) 318, 682
BstYI RGATCY 2 cut(s) 318, 682
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 815
BtgI CCRYGG 2 cut(s) 28, 75
BtgZI GCGATG 1 cut(s) 130
BtsCI GGATG 4 cut(s) 70, 357, 481, 1044
BtsIMutI CAGTG 1 cut(s) 792
Cac8I GCNNGC 2 cut(s) 520, 760
CfoI GCGC 1 cut(s) 764
Cfr10I RCCGGY 1 cut(s) 1054
Cfr13I GGNCC 1 cut(s) 587
Cfr9I CCCGGG 1 cut(s) 188
CseI GACGC 1 cut(s) 1018
Csp6I GTAC 3 cut(s) 220, 582, 608
CviAII CATG 3 cut(s) 29, 419, 1097
CviQI GTAC 3 cut(s) 220, 582, 608
DdeI CTNAG 4 cut(s) 198, 260, 279, 823
DpnI GATC 6 cut(s) 159, 320, 488, 684, 928, 967
DpnII GATC 6 cut(s) 157, 318, 486, 682, 926, 965
Eam1104I CTCTTC 4 cut(s) 78, 376, 395, 1062
EarI CTCTTC 4 cut(s) 78, 376, 395, 1062
EciI GGCGGA 3 cut(s) 48, 982, 1038
Ecl136II GAGCTC 2 cut(s) 88, 386
Eco130I CCWWGG 5 cut(s) 28, 176, 471, 816, 1015
Eco24I GRGCYC 2 cut(s) 90, 388
Eco47I GGWCC 1 cut(s) 587
Eco53kI GAGCTC 2 cut(s) 88, 386
Eco57I CTGAAG 1 cut(s) 907
Eco72I CACGTG 1 cut(s) 778
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 2 cut(s) 88, 386
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 5 cut(s) 28, 176, 471, 816, 1015
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 2 cut(s) 90, 388
ErhI CCWWGG 5 cut(s) 28, 176, 471, 816, 1015
Esp3I CGTCTC 4 cut(s) 538, 667, 910, 1036
FaeI CATG 3 cut(s) 32, 422, 1100
FaiI YATR 5 cut(s) 30, 416, 420, 986, 1098
FalI AAGNNNNNCTT 2 cut(s) 637, 669
FaqI GGGAC 2 cut(s) 270, 782
FatI CATG 3 cut(s) 28, 418, 1096
Fnu4HI GCNGC 3 cut(s) 577, 857, 1021
FokI GGATG 4 cut(s) 57, 364, 488, 1051
FriOI GRGCYC 2 cut(s) 90, 388
Fsp4HI GCNGC 3 cut(s) 577, 857, 1021
FspBI CTAG 4 cut(s) 492, 519, 860, 897
GlaI GCGC 1 cut(s) 763
GluI GCNGC 3 cut(s) 577, 857, 1021
HaeIII GGCC 1 cut(s) 815
HapII CCGG 7 cut(s) 56, 189, 241, 303, 525, 1035, 1055
HgaI GACGC 1 cut(s) 1018
HhaI GCGC 1 cut(s) 764
Hin1I GRCGYC 1 cut(s) 1029
Hin1II CATG 3 cut(s) 32, 422, 1100
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HinfI GANTC 3 cut(s) 361, 910, 1076
HpaI GTTAAC 1 cut(s) 832
HpaII CCGG 7 cut(s) 56, 189, 241, 303, 525, 1035, 1055
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 2 cut(s) 341, 832
Hpy188I TCNGA 5 cut(s) 252, 390, 538, 687, 926
Hpy188III TCNNGA 7 cut(s) 431, 462, 502, 624, 635, 897, 907
Hpy8I GTNNAC 2 cut(s) 341, 832
Hpy99I CGWCG 2 cut(s) 125, 256
HpyAV CCTTC 5 cut(s) 113, 428, 533, 663, 1017
HpyCH4III ACNGT 5 cut(s) 125, 565, 751, 796, 1112
HpyCH4IV ACGT 3 cut(s) 777, 828, 903
HpyCH4V TGCA 3 cut(s) 341, 418, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 135, 281, 576, 1026
HpyF3I CTNAG 4 cut(s) 198, 260, 279, 823
HpySE526I ACGT 3 cut(s) 777, 828, 903
Hsp92I GRCGYC 1 cut(s) 1029
Hsp92II CATG 3 cut(s) 32, 422, 1100
HspAI GCGC 1 cut(s) 762
KspAI GTTAAC 1 cut(s) 832
Kzo9I GATC 6 cut(s) 157, 318, 486, 682, 926, 965
LguI GCTCTTC 2 cut(s) 78, 376
LmnI GCTCC 5 cut(s) 391, 473, 527, 557, 725
Lsp1109I GCAGC 1 cut(s) 588
LweI GCATC 1 cut(s) 986
MaeI CTAG 4 cut(s) 492, 519, 860, 897
MaeII ACGT 3 cut(s) 777, 828, 903
MaeIII GTNAC 3 cut(s) 236, 287, 751
MalI GATC 6 cut(s) 159, 320, 488, 684, 928, 967
MboI GATC 6 cut(s) 157, 318, 486, 682, 926, 965
MboII GAAGA 9 cut(s) 41, 95, 367, 370, 393, 412, 839, 963, 1079
MflI RGATCY 2 cut(s) 318, 682
MhlI GDGCHC 4 cut(s) 90, 343, 388, 777
MluCI AATT 4 cut(s) 406, 440, 950, 1042
MlyI GAGTC 3 cut(s) 355, 904, 1085
MmeI TCCRAC 2 cut(s) 275, 710
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 2 cut(s) 831, 999
MspA1I CMGCKG 1 cut(s) 579
MspI CCGG 7 cut(s) 56, 189, 241, 303, 525, 1035, 1055
MspR9I CCNGG 5 cut(s) 57, 189, 190, 680, 1036
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 5 cut(s) 39, 135, 281, 576, 1026
NciI CCSGG 4 cut(s) 57, 189, 190, 1036
NcoI CCATGG 1 cut(s) 28
NdeII GATC 6 cut(s) 157, 318, 486, 682, 926, 965
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 3 cut(s) 32, 422, 1100
NlaIV GGNNCC 2 cut(s) 529, 684
NmeAIII GCCGAG 1 cut(s) 678
NmuCI GTSAC 2 cut(s) 236, 751
NsiI ATGCAT 1 cut(s) 420
PciSI GCTCTTC 2 cut(s) 78, 376
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfoI TCCNGGA 2 cut(s) 678, 1034
PkrI GCNGC 3 cut(s) 578, 858, 1022
PleI GAGTC 3 cut(s) 355, 904, 1084
PmaCI CACGTG 1 cut(s) 778
PmlI CACGTG 1 cut(s) 778
PpsI GAGTC 3 cut(s) 355, 904, 1084
Ppu21I YACGTR 1 cut(s) 778
PshAI GACNNNNGTC 1 cut(s) 365
Psp124BI GAGCTC 2 cut(s) 90, 388
Psp6I CCWGG 1 cut(s) 678
PspCI CACGTG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 2 cut(s) 529, 684
PspPI GGNCC 1 cut(s) 587
PsuI RGATCY 2 cut(s) 318, 682
RsaI GTAC 3 cut(s) 221, 583, 609
RsaNI GTAC 3 cut(s) 220, 582, 608
SacI GAGCTC 2 cut(s) 90, 388
SapI GCTCTTC 2 cut(s) 78, 376
SaqAI TTAA 2 cut(s) 831, 999
SatI GCNGC 3 cut(s) 577, 857, 1021
Sau3AI GATC 6 cut(s) 157, 318, 486, 682, 926, 965
Sau96I GGNCC 1 cut(s) 587
SchI GAGTC 3 cut(s) 355, 904, 1085
ScrFI CCNGG 5 cut(s) 57, 189, 190, 680, 1036
SduI GDGCHC 4 cut(s) 90, 343, 388, 777
SfaNI GCATC 1 cut(s) 986
SinI GGWCC 1 cut(s) 587
SmaI CCCGGG 1 cut(s) 190
SmlI CTYRAG 3 cut(s) 133, 460, 622
SmoI CTYRAG 3 cut(s) 133, 460, 622
Sse9I AATT 4 cut(s) 406, 440, 950, 1042
SsiI CCGC 8 cut(s) 33, 109, 579, 854, 857, 993, 1020, 1023
SspMI CTAG 4 cut(s) 492, 519, 860, 897
SstI GAGCTC 2 cut(s) 90, 388
StyD4I CCNGG 5 cut(s) 55, 187, 188, 678, 1034
StyI CCWWGG 5 cut(s) 28, 176, 471, 816, 1015
TaaI ACNGT 5 cut(s) 125, 565, 751, 796, 1112
TaiI ACGT 3 cut(s) 780, 831, 906
TaqI TCGA 3 cut(s) 120, 908, 980
TasI AATT 4 cut(s) 406, 440, 950, 1042
TauI GCSGC 2 cut(s) 859, 1023
Tru1I TTAA 2 cut(s) 831, 999
Tru9I TTAA 2 cut(s) 831, 999
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 2 cut(s) 236, 751
TseI GCWGC 1 cut(s) 576
Tsp45I GTSAC 2 cut(s) 236, 751
TspDTI ATGAA 7 cut(s) 59, 368, 435, 445, 492, 1055, 1085
TspGWI ACGGA 3 cut(s) 92, 224, 649
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 1 cut(s) 799
VneI GTGCAC 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 440
XbaI TCTAGA 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 188
XspI CTAG 4 cut(s) 492, 519, 860, 897
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.