Rmu_sc0002292.1_g000011

Protein CUP-SHAPED COTYLEDON 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002292.1
Physical Location & Seq
Reverse (-)
50396 .. 52234
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002292.1_g000011.1.cds

Sequence Viewer

Length: 1077 bp
atgaacctcggtcgccatcttgatcagctaaacggtgttcacctccacgacaaccaactgccgccggggtttcgcttccacccttccgacgaggaactcatcagctactacctcctcaaaaaggtcatggactccaacttcacttgtcgcgccatagccgaagttgacctcaacaagtgcgagccatggcagctccctggtaagaaagcaaagatgggggagaaagagtggtacttcttcagcctccgcgacaggaaatacccgactggccttcgcaccaaccgtgccactgaagccgggtactggaaagccaccgggaaagaccgagagatttacagctccaagacttgttcccttcttgggatgaagaagactttggttttttaccgcggccgagctcccaagggtgtgaaaagtaactgggtcatgcatgagtaccgccttgaaggccgatttgcttacaattacctccccaggaactcccaggaagagtgggtcatttcgagggtattccagaaggccaagaagagcaatggacccgaatccaagaagacccgaatgattgggtccagcgggtacccagccgagcccagctcgccttcttcctcctctgtctcactgccaccacttttcgactcctccccttactacccaaccgtccctttctccaacggcaatggttccctcaccgaccgtgacagctgctcccacgataaccgtaccccgagggagcacgtgtcctgtttctccaccaacagcgactccgccaacaccggcactttcaaccatctcatgacttccttggacctcgctccgccgccgcagccgcagacttcgctccacttgtctggcggcttcggcggcctctcggactttccgagcctcaggtctctccaggagaatctccacctgcccttcttcttcccgcagggactgcagccccaccagccctactccggggccggtggctccttcgacctcggtgactggagctcactcggaaactggcgtggcgccgctgccgaagagcccagggctgtgggtccaaccgaggccgattgcatgtggacgtactaa

Protein Analysis

358

Amino Acids

40.18

Weight (kDa)

8.75

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 918
Acc36I ACCTGC 1 cut(s) 918
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 2 cut(s) 576, 1013
AccII CGCG 3 cut(s) 150, 249, 390
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 2 cut(s) 223, 312
AcvI CACGTG 1 cut(s) 736
AcyI GRCGYC 1 cut(s) 1014
AfaI GTAC 6 cut(s) 233, 302, 437, 578, 721, 1073
AfiI CCNNNNNNNGG 5 cut(s) 121, 303, 360, 956, 957
AflIII ACRYGT 1 cut(s) 735
AgsI TTSAA 2 cut(s) 446, 784
AjnI CCWGG 5 cut(s) 196, 473, 483, 894, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AluBI AGCT 8 cut(s) 28, 105, 193, 339, 398, 594, 702, 993
AluI AGCT 8 cut(s) 28, 105, 193, 339, 398, 594, 702, 993
Alw21I GWGCWC 3 cut(s) 400, 735, 995
Alw26I GTCTC 2 cut(s) 619, 894
AlwNI CAGNNNCTG 1 cut(s) 934
Ama87I CYCGRG 1 cut(s) 724
AoxI GGCC 7 cut(s) 268, 391, 448, 519, 862, 960, 1053
ApeKI GCWGC 5 cut(s) 190, 702, 823, 937, 1019
Asp718I GGTACC 1 cut(s) 576
AspLEI GCGC 2 cut(s) 152, 1016
AspS9I GGNCC 5 cut(s) 536, 567, 805, 960, 1043
AsuC2I CCSGG 4 cut(s) 66, 298, 316, 958
AsuHPI GGTGA 3 cut(s) 32, 679, 995
AvaI CYCGRG 1 cut(s) 724
AvaII GGWCC 4 cut(s) 536, 567, 805, 1043
AxyI CCTNAGG 1 cut(s) 884
BanI GGYRCC 2 cut(s) 576, 1013
BanII GRGCYC 4 cut(s) 400, 591, 995, 1032
BbrPI CACGTG 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 377, 557
Bbv12I GWGCWC 3 cut(s) 400, 735, 995
BbvI GCAGC 5 cut(s) 202, 689, 835, 949, 1006
BccI CCATC 3 cut(s) 24, 208, 795
BceAI ACGGC 1 cut(s) 688
BciT130I CCWGG 5 cut(s) 198, 475, 485, 896, 1033
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 4 cut(s) 66, 298, 316, 958
BcoDI GTCTC 2 cut(s) 619, 894
BfmI CTRYAG 1 cut(s) 935
BfoI RGCGCY 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 918
BglI GCCNNNNNGGC 1 cut(s) 447
Bme1390I CCNGG 9 cut(s) 66, 198, 298, 316, 475, 485, 896, 958, 1033
Bme18I GGWCC 4 cut(s) 536, 567, 805, 1043
BmeT110I CYCGRG 1 cut(s) 724
BmgT120I GGNCC 5 cut(s) 536, 567, 805, 960, 1043
BmiI GGNNCC 8 cut(s) 538, 568, 578, 682, 961, 970, 1015, 1044
BmrFI CCNGG 9 cut(s) 66, 198, 298, 316, 475, 485, 896, 958, 1033
BmrI ACTGGG 1 cut(s) 430
BmuI ACTGGG 1 cut(s) 430
BpiI GAAGAC 2 cut(s) 377, 557
BplI GAGNNNNNCTC 2 cut(s) 578, 610
BpmI CTGGAG 2 cut(s) 878, 1009
BpuMI CCSGG 4 cut(s) 66, 298, 316, 958
BsaAI YACGTR 1 cut(s) 736
BsaHI GRCGYC 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 894
BsaXI ACNNNNNCTCC 8 cut(s) 212, 242, 689, 719, 722, 746, 752, 776
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 303, 360, 956, 957
Bse118I RCCGGY 2 cut(s) 773, 962
Bse1I ACTGG 5 cut(s) 271, 308, 425, 992, 1010
Bse21I CCTNAGG 1 cut(s) 884
Bse3DI GCAATG 2 cut(s) 538, 682
BseBI CCWGG 5 cut(s) 198, 475, 485, 896, 1033
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 5 cut(s) 121, 303, 360, 956, 957
BseMI GCAATG 2 cut(s) 538, 682
BseMII CTCAG 1 cut(s) 898
BseNI ACTGG 5 cut(s) 271, 308, 425, 992, 1010
BseRI GAGGAG 3 cut(s) 104, 598, 628
BseX3I CGGCCG 1 cut(s) 391
BseXI GCAGC 5 cut(s) 202, 689, 835, 949, 1006
BseYI CCCAGC 2 cut(s) 580, 590
Bsh1236I CGCG 3 cut(s) 150, 249, 390
Bsh1285I CGRYCG 3 cut(s) 13, 394, 694
BshFI GGCC 7 cut(s) 270, 393, 450, 521, 864, 962, 1055
BshNI GGYRCC 2 cut(s) 576, 1013
BsiEI CGRYCG 3 cut(s) 13, 394, 694
BsiHKAI GWGCWC 3 cut(s) 400, 735, 995
BsiHKCI CYCGRG 1 cut(s) 724
BsiSI CCGG 6 cut(s) 65, 297, 315, 774, 957, 963
BslFI GGGAC 2 cut(s) 644, 945
BslI CCNNNNNNNGG 5 cut(s) 121, 303, 360, 956, 957
BsmAI GTCTC 2 cut(s) 619, 894
BsmFI GGGAC 2 cut(s) 644, 945
BsnI GGCC 7 cut(s) 270, 393, 450, 521, 864, 962, 1055
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 1 cut(s) 724
Bsp1286I GDGCHC 5 cut(s) 400, 591, 735, 995, 1032
Bsp143I GATC 1 cut(s) 22
Bsp19I CCATGG 1 cut(s) 185
BspANI GGCC 7 cut(s) 270, 393, 450, 521, 864, 962, 1055
BspCNI CTCAG 1 cut(s) 897
BspFNI CGCG 3 cut(s) 150, 249, 390
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 8 cut(s) 538, 568, 578, 682, 961, 970, 1015, 1044
BspMAI CTGCAG 1 cut(s) 939
BspMI ACCTGC 1 cut(s) 918
BspQI GCTCTTC 2 cut(s) 521, 1020
BspT107I GGYRCC 2 cut(s) 576, 1013
BspTNI GGTCTC 1 cut(s) 894
BsrDI GCAATG 2 cut(s) 538, 682
BsrFI RCCGGY 2 cut(s) 773, 962
BsrI ACTGG 5 cut(s) 271, 308, 425, 992, 1010
BssAI RCCGGY 2 cut(s) 773, 962
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 1014
BssT1I CCWWGG 3 cut(s) 185, 402, 801
Bst2UI CCWGG 5 cut(s) 198, 475, 485, 896, 1033
Bst4CI ACNGT 5 cut(s) 35, 284, 658, 695, 719
Bst6I CTCTTC 3 cut(s) 483, 521, 1020
BstACI GRCGYC 1 cut(s) 1014
BstAPI GCANNNNNTGC 1 cut(s) 934
BstBAI YACGTR 1 cut(s) 736
BstC8I GCNNGC 2 cut(s) 182, 596
BstDEI CTNAG 1 cut(s) 884
BstDSI CCRYGG 2 cut(s) 185, 388
BstENI CCTNNNNNAGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 369
BstFNI CGCG 3 cut(s) 150, 249, 390
BstH2I RGCGCY 1 cut(s) 1017
BstHHI GCGC 2 cut(s) 152, 1016
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 619, 894
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 3 cut(s) 13, 394, 694
BstNI CCWGG 5 cut(s) 198, 475, 485, 896, 1033
BstNSI RCATGY 1 cut(s) 1066
BstSCI CCNGG 9 cut(s) 64, 196, 296, 314, 473, 483, 894, 956, 1031
BstSFI CTRYAG 1 cut(s) 935
BstUI CGCG 3 cut(s) 150, 249, 390
BstV1I GCAGC 5 cut(s) 202, 689, 835, 949, 1006
BstV2I GAAGAC 2 cut(s) 377, 557
BstXI CCANNNNNNTGG 2 cut(s) 848, 1039
BstZI CGGCCG 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 884
BsuRI GGCC 7 cut(s) 270, 393, 450, 521, 864, 962, 1055
BtgI CCRYGG 2 cut(s) 185, 388
BtsCI GGATG 1 cut(s) 369
BtsI GCAGTG 1 cut(s) 617
BtsIMutI CAGTG 2 cut(s) 288, 617
BveI ACCTGC 1 cut(s) 918
Cac8I GCNNGC 2 cut(s) 182, 596
CaiI CAGNNNCTG 1 cut(s) 934
CciI TCATGA 1 cut(s) 792
CfoI GCGC 2 cut(s) 152, 1016
Cfr10I RCCGGY 2 cut(s) 773, 962
Cfr13I GGNCC 5 cut(s) 536, 567, 805, 960, 1043
Cfr42I CCGCGG 1 cut(s) 391
Csp6I GTAC 6 cut(s) 232, 301, 436, 577, 720, 1072
CviAII CATG 6 cut(s) 127, 186, 427, 431, 793, 1063
CviQI GTAC 6 cut(s) 232, 301, 436, 577, 720, 1072
DdeI CTNAG 1 cut(s) 884
DinI GGCGCC 1 cut(s) 1015
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 391
EagI CGGCCG 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 483, 521, 1020
EarI CTCTTC 3 cut(s) 483, 521, 1020
EciI GGCGGA 2 cut(s) 754, 804
Ecl136II GAGCTC 2 cut(s) 398, 993
EclXI CGGCCG 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 185, 402, 801
Eco24I GRGCYC 4 cut(s) 400, 591, 995, 1032
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 4 cut(s) 536, 567, 805, 1043
Eco52I CGGCCG 1 cut(s) 391
Eco53kI GAGCTC 2 cut(s) 398, 993
Eco57I CTGAAG 2 cut(s) 223, 312
Eco72I CACGTG 1 cut(s) 736
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 724
EcoICRI GAGCTC 2 cut(s) 398, 993
EcoNI CCTNNNNNAGG 1 cut(s) 119
EcoRII CCWGG 5 cut(s) 196, 473, 483, 894, 1031
EcoT14I CCWWGG 3 cut(s) 185, 402, 801
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 4 cut(s) 400, 591, 995, 1032
EgeI GGCGCC 1 cut(s) 1015
EheI GGCGCC 1 cut(s) 1015
ErhI CCWWGG 3 cut(s) 185, 402, 801
FaeI CATG 6 cut(s) 130, 189, 430, 434, 796, 1066
FaiI YATR 7 cut(s) 128, 155, 187, 428, 432, 794, 1064
FaqI GGGAC 2 cut(s) 644, 945
FatI CATG 6 cut(s) 126, 185, 426, 430, 792, 1062
FauI CCCGC 2 cut(s) 566, 933
FbaI TGATCA 1 cut(s) 22
FokI GGATG 1 cut(s) 376
FriOI GRGCYC 4 cut(s) 400, 591, 995, 1032
GlaI GCGC 2 cut(s) 151, 1015
GsaI CCCAGC 2 cut(s) 584, 594
GsuI CTGGAG 2 cut(s) 878, 1009
HaeII RGCGCY 1 cut(s) 1017
HaeIII GGCC 7 cut(s) 270, 393, 450, 521, 864, 962, 1055
HapII CCGG 6 cut(s) 65, 297, 315, 774, 957, 963
HhaI GCGC 2 cut(s) 152, 1016
Hin1I GRCGYC 1 cut(s) 1014
Hin1II CATG 6 cut(s) 130, 189, 430, 434, 796, 1066
Hin6I GCGC 2 cut(s) 150, 1014
HinP1I GCGC 2 cut(s) 150, 1014
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 5 cut(s) 131, 542, 635, 761, 901
HpaII CCGG 6 cut(s) 65, 297, 315, 774, 957, 963
HphI GGTGA 3 cut(s) 32, 679, 995
Hpy166II GTNNAC 3 cut(s) 40, 166, 1068
Hpy188I TCNGA 4 cut(s) 88, 871, 879, 1001
Hpy188III TCNNGA 3 cut(s) 20, 514, 793
Hpy8I GTNNAC 3 cut(s) 40, 166, 1068
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 8 cut(s) 93, 281, 365, 440, 511, 609, 925, 982
HpyCH4III ACNGT 5 cut(s) 35, 284, 658, 695, 719
HpyCH4IV ACGT 2 cut(s) 735, 1070
HpyCH4V TGCA 3 cut(s) 430, 937, 1062
HpyF3I CTNAG 1 cut(s) 884
HpySE526I ACGT 2 cut(s) 735, 1070
Hsp92I GRCGYC 1 cut(s) 1014
Hsp92II CATG 6 cut(s) 130, 189, 430, 434, 796, 1066
HspAI GCGC 2 cut(s) 150, 1014
KasI GGCGCC 1 cut(s) 1013
KpnI GGTACC 1 cut(s) 580
Ksp22I TGATCA 1 cut(s) 22
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 1 cut(s) 22
LguI GCTCTTC 2 cut(s) 521, 1020
LmnI GCTCC 9 cut(s) 198, 344, 403, 710, 730, 817, 843, 974, 990
Lsp1109I GCAGC 5 cut(s) 202, 689, 835, 949, 1006
MaeII ACGT 2 cut(s) 735, 1070
MaeIII GTNAC 3 cut(s) 416, 695, 983
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MhlI GDGCHC 5 cut(s) 400, 591, 735, 995, 1032
MluCI AATT 1 cut(s) 463
Mly113I GGCGCC 1 cut(s) 1014
MlyI GAGTC 3 cut(s) 125, 629, 755
MmeI TCCRAC 4 cut(s) 111, 159, 693, 1070
Mph1103I ATGCAT 1 cut(s) 432
MspA1I CMGCKG 4 cut(s) 390, 573, 702, 1019
MspI CCGG 6 cut(s) 65, 297, 315, 774, 957, 963
MspR9I CCNGG 9 cut(s) 66, 198, 298, 316, 475, 485, 896, 958, 1033
MvaI CCWGG 5 cut(s) 198, 475, 485, 896, 1033
MvnI CGCG 3 cut(s) 150, 249, 390
NarI GGCGCC 1 cut(s) 1014
NciI CCSGG 4 cut(s) 66, 298, 316, 958
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 22
NlaIII CATG 6 cut(s) 130, 189, 430, 434, 796, 1066
NlaIV GGNNCC 8 cut(s) 538, 568, 578, 682, 961, 970, 1015, 1044
NmeAIII GCCGAG 2 cut(s) 419, 610
NmuCI GTSAC 2 cut(s) 695, 983
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 1 cut(s) 1066
PagI TCATGA 1 cut(s) 792
PaqCI CACCTGC 1 cut(s) 918
PasI CCCWGGG 1 cut(s) 1032
PciSI GCTCTTC 2 cut(s) 521, 1020
PcsI WCGNNNNNNNCGW 2 cut(s) 280, 875
PfeI GAWTC 2 cut(s) 542, 901
PfoI TCCNGGA 1 cut(s) 894
PleI GAGTC 3 cut(s) 125, 629, 755
PluTI GGCGCC 1 cut(s) 1017
PmaCI CACGTG 1 cut(s) 736
PmlI CACGTG 1 cut(s) 736
PpsI GAGTC 3 cut(s) 125, 629, 755
Ppu21I YACGTR 1 cut(s) 736
Psp124BI GAGCTC 2 cut(s) 400, 995
Psp6I CCWGG 5 cut(s) 196, 473, 483, 894, 1031
PspCI CACGTG 1 cut(s) 736
PspFI CCCAGC 2 cut(s) 580, 590
PspGI CCWGG 5 cut(s) 196, 473, 483, 894, 1031
PspN4I GGNNCC 8 cut(s) 538, 568, 578, 682, 961, 970, 1015, 1044
PspPI GGNCC 5 cut(s) 536, 567, 805, 960, 1043
PstI CTGCAG 1 cut(s) 939
PstNI CAGNNNCTG 1 cut(s) 934
PvuII CAGCTG 1 cut(s) 702
RsaI GTAC 6 cut(s) 233, 302, 437, 578, 721, 1073
RsaNI GTAC 6 cut(s) 232, 301, 436, 577, 720, 1072
SacI GAGCTC 2 cut(s) 400, 995
SacII CCGCGG 1 cut(s) 391
SapI GCTCTTC 2 cut(s) 521, 1020
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 5 cut(s) 536, 567, 805, 960, 1043
SchI GAGTC 3 cut(s) 125, 629, 755
ScrFI CCNGG 9 cut(s) 66, 198, 298, 316, 475, 485, 896, 958, 1033
SduI GDGCHC 5 cut(s) 400, 591, 735, 995, 1032
SfcI CTRYAG 1 cut(s) 935
SfoI GGCGCC 1 cut(s) 1015
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 4 cut(s) 536, 567, 805, 1043
Sse9I AATT 1 cut(s) 463
SspDI GGCGCC 1 cut(s) 1013
SstI GAGCTC 2 cut(s) 400, 995
StyD4I CCNGG 9 cut(s) 64, 196, 296, 314, 473, 483, 894, 956, 1031
StyI CCWWGG 3 cut(s) 185, 402, 801
TaaI ACNGT 5 cut(s) 35, 284, 658, 695, 719
TaiI ACGT 2 cut(s) 738, 1073
TaqI TCGA 3 cut(s) 503, 633, 975
TaqII GACCGA 1 cut(s) 339
TasI AATT 1 cut(s) 463
TauI GCSGC 8 cut(s) 64, 393, 820, 823, 829, 855, 864, 1019
TfiI GAWTC 2 cut(s) 542, 901
TscAI CASTG 2 cut(s) 295, 624
TseFI GTSAC 2 cut(s) 695, 983
TseI GCWGC 5 cut(s) 190, 702, 823, 937, 1019
Tsp45I GTSAC 2 cut(s) 695, 983
TspDTI ATGAA 2 cut(s) 17, 380
TspRI CASTG 2 cut(s) 295, 624
VpaK11BI GGWCC 4 cut(s) 536, 567, 805, 1043
XagI CCTNNNNNAGG 1 cut(s) 119
XceI RCATGY 1 cut(s) 1066
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.