FvH4_3g03540

Protein CUP-SHAPED COTYLEDON 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012907
Physical Location & Seq
Reverse (-)
1957303 .. 1959663
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03540.t2

Sequence Viewer

Length: 1014 bp
ATGGACCTCATGAACCTCCACGAGTACGACAACCAACTGCCTCCAGGGTTTCGCTTCCACCCTTCCGACGAGGAGCTCATCCGCTACTATCTACATAACAAGGTCATAAACTCCAACTTCACCAGTGGCCCCATATCCCAAGTCGTTGACCTCAACAAGTGCGAGCCCTGGCAGCTCCCTGAGAAAGCAAAAATGGGGGAGAAAGAGTGGTACATGTTCAGCCTGCGCGACCAGAAATACCCGACCGGACTTCGCGCCAACCGTGCCACTAAAGCCGGGTACTGGAAAGCCACCGGGAAAGACCGAGAGATTTACAGCTCCAAGAGTTGTTCCCTTATTGGAATGAAGAAGACCCTGGTTTTTTACCACGGCCGAGCTCCCAAGGGTGTCAGGAGTAACTGGGTCATGCACGAGTACCGCCTTGAAGGTCTATTTGCTTCCCAGGAGTGGAATCAGTGGATCCTTTCGAGGGTTTTCCAGAAGGCCATGAAGATTAATGAACCCGAATGCAAGGAGACCCGAATGATTGGGTCCGGCGGGTACTCTGCCGAGCCCAGCTCGTCTTCTTCCTCCTCGGTCTCACTGCCACCACTTTTCGACTCCTCCCCTTACTACCCAACCAATGCTTCCCTCACCGACCGTGACAGCTGCTCCCATGACAACCGTACCCCAATGGAGCATGTGTCCTGTTTCTCCACCAACTCCGGCACTTCCGACCATCTCATGACTTCCTTGGACCTCGCTCCGCTGCCGCAGCACCAAACTAGTTCGCTCCACGGCTTCGGCGGCCTCTCTGACTTTCCTAGCAGCCTCGGGTCTCTCGAGGAGAATCTCCAGCTGCCCTTCTTATTCTCGCAGGGAATGCAGCCTCATCAGCCCTACTACTCCAGCACCACTGGTTCCTTCGAATTCGACCTCGGCGACTGGAGCTCGCTAGGTAACTGGCGTGCCGCCACTGCCGAAGAGCCCGAGGCCTTGGCTCCCGCAGAGGCTGATTACATGTGGACGTACTAA

Protein Analysis

338

Amino Acids

38.16

Weight (kDa)

5.67

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 77 2.2e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 228, 255
AciI CCGC 8 cut(s) 82, 418, 537, 746, 752, 786, 951, 984
AclWI GGATC 2 cut(s) 454, 467
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 908
AfaI GTAC 7 cut(s) 26, 212, 281, 416, 542, 667, 1010
AfiI CCNNNNNNNGG 3 cut(s) 282, 447, 469
AflIII ACRYGT 2 cut(s) 213, 999
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 1 cut(s) 764
AjnI CCWGG 4 cut(s) 43, 167, 354, 441
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AluBI AGCT 8 cut(s) 76, 175, 318, 377, 558, 648, 838, 930
AluI AGCT 8 cut(s) 76, 175, 318, 377, 558, 648, 838, 930
Alw21I GWGCWC 3 cut(s) 78, 379, 932
Alw26I GTCTC 3 cut(s) 509, 583, 822
AlwI GGATC 2 cut(s) 454, 467
AlwNI CAGNNNCTG 1 cut(s) 992
Ama87I CYCGRG 3 cut(s) 812, 821, 968
AoxI GGCC 5 cut(s) 127, 370, 483, 787, 972
ApeKI GCWGC 7 cut(s) 172, 648, 748, 754, 807, 838, 865
ApoI RAATTY 1 cut(s) 908
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 2 cut(s) 228, 257
AspS9I GGNCC 4 cut(s) 4, 128, 531, 736
AsuC2I CCSGG 2 cut(s) 277, 295
AsuHPI GGTGA 2 cut(s) 112, 625
AsuII TTCGAA 1 cut(s) 906
AvaI CYCGRG 3 cut(s) 812, 821, 968
AvaII GGWCC 3 cut(s) 4, 531, 736
BaeI ACNNNNGTAYC 2 cut(s) 649, 682
BamHI GGATCC 1 cut(s) 459
BanII GRGCYC 6 cut(s) 78, 168, 379, 555, 932, 969
BauI CACGAG 2 cut(s) 20, 410
BbsI GAAGAC 2 cut(s) 356, 555
Bbv12I GWGCWC 3 cut(s) 78, 379, 932
BbvI GCAGC 7 cut(s) 184, 635, 735, 766, 819, 825, 877
BccI CCATC 1 cut(s) 726
BceAI ACGGC 2 cut(s) 385, 793
BciT130I CCWGG 4 cut(s) 45, 169, 356, 443
BcnI CCSGG 2 cut(s) 277, 295
BcoDI GTCTC 3 cut(s) 509, 583, 822
BcuI ACTAGT 1 cut(s) 764
BfaI CTAG 3 cut(s) 765, 804, 935
Bme1390I CCNGG 6 cut(s) 45, 169, 277, 295, 356, 443
Bme18I GGWCC 3 cut(s) 4, 531, 736
BmeT110I CYCGRG 3 cut(s) 812, 821, 968
BmgT120I GGNCC 4 cut(s) 4, 128, 531, 736
BmiI GGNNCC 5 cut(s) 130, 461, 532, 901, 981
BmrFI CCNGG 6 cut(s) 45, 169, 277, 295, 356, 443
BmrI ACTGGG 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 2 cut(s) 356, 555
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 4 cut(s) 27, 818, 871, 946
Bpu14I TTCGAA 1 cut(s) 906
BpuMI CCSGG 2 cut(s) 277, 295
BsaI GGTCTC 3 cut(s) 509, 583, 822
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 6 cut(s) 191, 221, 635, 665, 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 447, 469
Bse1I ACTGG 6 cut(s) 123, 287, 404, 901, 929, 947
BseBI CCWGG 4 cut(s) 45, 169, 356, 443
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 3 cut(s) 282, 447, 469
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 6 cut(s) 123, 287, 404, 901, 929, 947
BseRI GAGGAG 4 cut(s) 86, 562, 592, 839
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 7 cut(s) 184, 635, 735, 766, 819, 825, 877
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 2 cut(s) 228, 255
Bsh1285I CGRYCG 3 cut(s) 246, 373, 640
BshFI GGCC 5 cut(s) 129, 372, 485, 789, 974
BsiEI CGRYCG 3 cut(s) 246, 373, 640
BsiHKAI GWGCWC 3 cut(s) 78, 379, 932
BsiHKCI CYCGRG 3 cut(s) 812, 821, 968
BsiSI CCGG 5 cut(s) 246, 276, 294, 534, 705
BslI CCNNNNNNNGG 3 cut(s) 282, 447, 469
BsmAI GTCTC 3 cut(s) 509, 583, 822
BsmI GAATGC 2 cut(s) 512, 867
BsnI GGCC 5 cut(s) 129, 372, 485, 789, 974
Bso31I GGTCTC 3 cut(s) 509, 583, 822
BsoBI CYCGRG 3 cut(s) 812, 821, 968
Bsp119I TTCGAA 1 cut(s) 906
Bsp1286I GDGCHC 6 cut(s) 78, 168, 379, 555, 932, 969
Bsp143I GATC 1 cut(s) 459
BspACI CCGC 8 cut(s) 82, 418, 537, 746, 752, 786, 951, 984
BspANI GGCC 5 cut(s) 129, 372, 485, 789, 974
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 228, 255
BspHI TCATGA 2 cut(s) 9, 723
BspLI GGNNCC 5 cut(s) 130, 461, 532, 901, 981
BspPI GGATC 2 cut(s) 454, 467
BspQI GCTCTTC 1 cut(s) 957
BspT104I TTCGAA 1 cut(s) 906
BspTNI GGTCTC 3 cut(s) 509, 583, 822
BsrI ACTGG 6 cut(s) 123, 287, 404, 901, 929, 947
BssMI GATC 1 cut(s) 459
BssSI CACGAG 2 cut(s) 20, 410
BssT1I CCWWGG 3 cut(s) 381, 732, 975
Bst2BI CACGAG 2 cut(s) 20, 410
Bst2UI CCWGG 4 cut(s) 45, 169, 356, 443
Bst4CI ACNGT 3 cut(s) 263, 641, 665
Bst6I CTCTTC 1 cut(s) 957
BstAPI GCANNNNNTGC 1 cut(s) 862
BstBI TTCGAA 1 cut(s) 906
BstC8I GCNNGC 4 cut(s) 164, 224, 932, 948
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 2 cut(s) 367, 775
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 228, 255
BstHHI GCGC 2 cut(s) 228, 257
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 3 cut(s) 509, 583, 822
BstMBI GATC 1 cut(s) 459
BstMCI CGRYCG 3 cut(s) 246, 373, 640
BstMWI GCNNNNNNNGC 9 cut(s) 172, 263, 272, 754, 786, 862, 874, 927, 956
BstNI CCWGG 4 cut(s) 45, 169, 356, 443
BstNSI RCATGY 3 cut(s) 217, 683, 1003
BstSCI CCNGG 6 cut(s) 43, 167, 275, 293, 354, 441
BstUI CGCG 2 cut(s) 228, 255
BstV1I GCAGC 7 cut(s) 184, 635, 735, 766, 819, 825, 877
BstV2I GAAGAC 2 cut(s) 356, 555
BstX2I RGATCY 1 cut(s) 459
BstYI RGATCY 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 370
BsuRI GGCC 5 cut(s) 129, 372, 485, 789, 974
BtgI CCRYGG 2 cut(s) 367, 775
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 2 cut(s) 581, 954
BtsIMutI CAGTG 5 cut(s) 130, 461, 581, 894, 954
Cac8I GCNNGC 4 cut(s) 164, 224, 932, 948
CaiI CAGNNNCTG 1 cut(s) 992
CciI TCATGA 2 cut(s) 9, 723
CfoI GCGC 2 cut(s) 228, 257
Cfr13I GGNCC 4 cut(s) 4, 128, 531, 736
Csp6I GTAC 7 cut(s) 25, 211, 280, 415, 541, 666, 1009
CviAII CATG 8 cut(s) 10, 214, 406, 487, 656, 680, 724, 1000
CviQI GTAC 7 cut(s) 25, 211, 280, 415, 541, 666, 1009
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 370
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Ecl136II GAGCTC 3 cut(s) 76, 377, 930
EclXI CGGCCG 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 381, 732, 975
Eco147I AGGCCT 1 cut(s) 974
Eco24I GRGCYC 6 cut(s) 78, 168, 379, 555, 932, 969
Eco31I GGTCTC 3 cut(s) 509, 583, 822
Eco47I GGWCC 3 cut(s) 4, 531, 736
Eco52I CGGCCG 1 cut(s) 370
Eco53kI GAGCTC 3 cut(s) 76, 377, 930
Eco88I CYCGRG 3 cut(s) 812, 821, 968
EcoICRI GAGCTC 3 cut(s) 76, 377, 930
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 4 cut(s) 43, 167, 354, 441
EcoT14I CCWWGG 3 cut(s) 381, 732, 975
EcoT38I GRGCYC 6 cut(s) 78, 168, 379, 555, 932, 969
ErhI CCWWGG 3 cut(s) 381, 732, 975
FaeI CATG 8 cut(s) 13, 217, 409, 490, 659, 683, 727, 1003
FatI CATG 8 cut(s) 9, 213, 405, 486, 655, 679, 723, 999
FauI CCCGC 2 cut(s) 530, 991
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 6 cut(s) 78, 168, 379, 555, 932, 969
FspBI CTAG 3 cut(s) 765, 804, 935
GlaI GCGC 2 cut(s) 227, 256
GsaI CCCAGC 1 cut(s) 558
GsuI CTGGAG 4 cut(s) 27, 818, 871, 946
HaeIII GGCC 5 cut(s) 129, 372, 485, 789, 974
HapII CCGG 5 cut(s) 246, 276, 294, 534, 705
HhaI GCGC 2 cut(s) 228, 257
Hin1II CATG 8 cut(s) 13, 217, 409, 490, 659, 683, 727, 1003
Hin6I GCGC 2 cut(s) 226, 255
HinP1I GCGC 2 cut(s) 226, 255
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 451, 599, 829
HpaII CCGG 5 cut(s) 246, 276, 294, 534, 705
HphI GGTGA 2 cut(s) 112, 625
Hpy166II GTNNAC 2 cut(s) 148, 1005
Hpy188I TCNGA 3 cut(s) 67, 715, 796
Hpy188III TCNNGA 5 cut(s) 10, 391, 478, 724, 821
Hpy8I GTNNAC 2 cut(s) 148, 1005
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 72, 419, 475, 853, 913
HpyCH4III ACNGT 3 cut(s) 263, 641, 665
HpyCH4IV ACGT 1 cut(s) 1007
HpyCH4V TGCA 3 cut(s) 409, 510, 865
HpyF10VI GCNNNNNNNGC 9 cut(s) 172, 263, 272, 754, 786, 862, 874, 927, 956
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 1007
Hsp92II CATG 8 cut(s) 13, 217, 409, 490, 659, 683, 727, 1003
HspAI GCGC 2 cut(s) 226, 255
Kzo9I GATC 1 cut(s) 459
LguI GCTCTTC 1 cut(s) 957
Lsp1109I GCAGC 7 cut(s) 184, 635, 735, 766, 819, 825, 877
MaeI CTAG 3 cut(s) 765, 804, 935
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 3 cut(s) 395, 641, 938
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 6 cut(s) 358, 361, 502, 555, 558, 974
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 6 cut(s) 78, 168, 379, 555, 932, 969
MluCI AATT 1 cut(s) 908
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 3 cut(s) 90, 138, 738
MseI TTAA 1 cut(s) 495
MspA1I CMGCKG 3 cut(s) 648, 748, 838
MspI CCGG 5 cut(s) 246, 276, 294, 534, 705
MspR9I CCNGG 6 cut(s) 45, 169, 277, 295, 356, 443
Mva1269I GAATGC 2 cut(s) 512, 867
MvaI CCWGG 4 cut(s) 45, 169, 356, 443
MvnI CGCG 2 cut(s) 228, 255
MwoI GCNNNNNNNGC 9 cut(s) 172, 263, 272, 754, 786, 862, 874, 927, 956
NciI CCSGG 2 cut(s) 277, 295
NdeII GATC 1 cut(s) 459
NlaIII CATG 8 cut(s) 13, 217, 409, 490, 659, 683, 727, 1003
NlaIV GGNNCC 5 cut(s) 130, 461, 532, 901, 981
NmeAIII GCCGAG 3 cut(s) 398, 574, 897
NmuCI GTSAC 1 cut(s) 641
NspI RCATGY 3 cut(s) 217, 683, 1003
NspV TTCGAA 1 cut(s) 906
PaeR7I CTCGAG 1 cut(s) 821
PagI TCATGA 2 cut(s) 9, 723
PceI AGGCCT 1 cut(s) 974
PciI ACATGT 2 cut(s) 213, 999
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 3 cut(s) 259, 819, 918
PctI GAATGC 2 cut(s) 512, 867
PfeI GAWTC 2 cut(s) 451, 829
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PscI ACATGT 2 cut(s) 213, 999
PshBI ATTAAT 1 cut(s) 495
Psp124BI GAGCTC 3 cut(s) 78, 379, 932
Psp6I CCWGG 4 cut(s) 43, 167, 354, 441
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 4 cut(s) 43, 167, 354, 441
PspN4I GGNNCC 5 cut(s) 130, 461, 532, 901, 981
PspPI GGNCC 4 cut(s) 4, 128, 531, 736
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 459
PvuII CAGCTG 2 cut(s) 648, 838
RsaI GTAC 7 cut(s) 26, 212, 281, 416, 542, 667, 1010
RsaNI GTAC 7 cut(s) 25, 211, 280, 415, 541, 666, 1009
SacI GAGCTC 3 cut(s) 78, 379, 932
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 1 cut(s) 495
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 4 cut(s) 4, 128, 531, 736
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 6 cut(s) 45, 169, 277, 295, 356, 443
SduI GDGCHC 6 cut(s) 78, 168, 379, 555, 932, 969
Sfr274I CTCGAG 1 cut(s) 821
SfuI TTCGAA 1 cut(s) 906
SinI GGWCC 3 cut(s) 4, 531, 736
SlaI CTCGAG 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
SpeI ACTAGT 1 cut(s) 764
Sse9I AATT 1 cut(s) 908
SseBI AGGCCT 1 cut(s) 974
SsiI CCGC 8 cut(s) 82, 418, 537, 746, 752, 786, 951, 984
SspMI CTAG 3 cut(s) 765, 804, 935
SstI GAGCTC 3 cut(s) 78, 379, 932
StuI AGGCCT 1 cut(s) 974
StyD4I CCNGG 6 cut(s) 43, 167, 275, 293, 354, 441
StyI CCWWGG 3 cut(s) 381, 732, 975
TaaI ACNGT 3 cut(s) 263, 641, 665
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 5 cut(s) 467, 597, 822, 906, 912
TaqII GACCGA 2 cut(s) 318, 565
TasI AATT 1 cut(s) 908
TauI GCSGC 3 cut(s) 754, 789, 953
TfiI GAWTC 2 cut(s) 451, 829
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 5 cut(s) 130, 461, 588, 901, 961
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 7 cut(s) 172, 648, 748, 754, 807, 838, 865
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 26, 359, 503, 513
TspRI CASTG 5 cut(s) 130, 461, 588, 901, 961
VpaK11BI GGWCC 3 cut(s) 4, 531, 736
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 908
XceI RCATGY 3 cut(s) 217, 683, 1003
XhoI CTCGAG 1 cut(s) 821
XspI CTAG 3 cut(s) 765, 804, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.