Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012907

Physical Location & Seq

Genomic Coordinates Reverse (-)

1993305 .. 1994378

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCACGAGTACCGCCTTGAAGATCTATTTGCTTCCCAGGAGTGGAATCAGTGGATCCTTTCGAGGGTTTTCCAGAAGGCCATGAAGATTAATGAACCCGAATGCAAGGAGACCCGAATGATTGGGTCCGGCGGGTACTCTGCCGAACCCAGCTCGTCTTCTTCCTCCTCGATCTCACTGCCACCACTTTTCGACTCCTCCCCTTACTACCCAACCAATGCTTCTCTCACCGACCGTGACAGCTGCTCCCATGACAACCGTACCCCAATGGAGCATGTGTCCTGTTTCTCCACCAACACCGGCACTTCCGACGACCTCATGACTTCCTTGGACCTCACTCCTCTGCCGCAGCACCAAACTAGTTCGCTCCACGTCCACGGCTTTGGTGGCCTCTCTGACTTTCCGAGCAGCCTCGGGTATCTCGAGGAGAATCTCCAGCTGCCCTTCTTATTTTCACAGGGAATGCAGCCTCACCAGCCCTACTACTCCAGCACCACTGGCTCCTTCGAATTCGACCTCGGCGACTGGAGCTCGCTAGGTAACTGGTGTGCCGCCACTGCCGAAGAGCCCGATCGAGGCCTTGGCTCCCGCAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

200

Amino Acids

22.1

Weight (kDa)

4.67

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53950
fragaria_vesca	FvH4_3g03540 FvH4_3g03540 FvH4_3g03580 FvH4_3g19410 FvH4_3g19410 FvH4_6g06070
rosa_chinensis	RchiOBHm_Chr5g0032661
rosa_laevigata	RLG00000033416
rosa_multiflora	Rmu_sc0002292.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047410 Rroxscaffold_1G00047870
rosa_rugosa	Rorug05G0133000
rosa_samantha	Rh5AG225500 Rh5BG226700 Rh5CG254200 Rh5DG231300
rosa_wichuraiana	Rw5G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	13, 132, 347, 552, 589
AclWI	GGATC	2 cut(s)	49, 62
AcsI	RAATTY	1 cut(s)	509
AfaI	GTAC	3 cut(s)	11, 137, 262
AfiI	CCNNNNNNNGG	3 cut(s)	42, 64, 575
AgsI	TTSAA	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	205, 237
AluBI	AGCT	4 cut(s)	153, 243, 439, 531
AluI	AGCT	4 cut(s)	153, 243, 439, 531
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	49, 62
AlwNI	CAGNNNCTG	1 cut(s)	597
Ama87I	CYCGRG	2 cut(s)	413, 422
AoxI	GGCC	3 cut(s)	78, 388, 577
ApeKI	GCWGC	5 cut(s)	243, 349, 408, 439, 466
ApoI	RAATTY	1 cut(s)	509
AseI	ATTAAT	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	126, 331
AsuHPI	GGTGA	2 cut(s)	220, 464
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	2 cut(s)	413, 422
AvaII	GGWCC	2 cut(s)	126, 331
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BamHI	GGATCC	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	533, 570
BauI	CACGAG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	5 cut(s)	230, 361, 420, 426, 478
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	2 cut(s)	360, 536
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	7 cut(s)	244, 347, 350, 409, 440, 467, 552
BlsI	GCNGC	7 cut(s)	245, 348, 351, 410, 441, 468, 553
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	126, 331
BmeT110I	CYCGRG	2 cut(s)	413, 422
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	126, 331
BmiI	GGNNCC	4 cut(s)	56, 127, 502, 586
BmrFI	CCNGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	3 cut(s)	419, 472, 547
Bpu14I	TTCGAA	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	6 cut(s)	36, 327, 376, 412, 517, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 263, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 64, 575
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	502, 530, 548
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	6 cut(s)	36, 327, 376, 412, 517, 580
BseLI	CCNNNNNNNGG	3 cut(s)	42, 64, 575
BseNI	ACTGG	3 cut(s)	502, 530, 548
BseRI	GAGGAG	4 cut(s)	157, 187, 330, 440
BseXI	GCAGC	5 cut(s)	230, 361, 420, 426, 478
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	2 cut(s)	235, 574
BshFI	GGCC	3 cut(s)	80, 390, 579
BsiEI	CGRYCG	2 cut(s)	235, 574
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	2 cut(s)	413, 422
BsiSI	CCGG	2 cut(s)	129, 300
BslI	CCNNNNNNNGG	3 cut(s)	42, 64, 575
BsmAI	GTCTC	1 cut(s)	104
BsmI	GAATGC	2 cut(s)	107, 468
BsnI	GGCC	3 cut(s)	80, 390, 579
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	2 cut(s)	413, 422
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	533, 570
Bsp143I	GATC	4 cut(s)	22, 54, 171, 571
BspACI	CCGC	5 cut(s)	13, 132, 347, 552, 589
BspANI	GGCC	3 cut(s)	80, 390, 579
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	4 cut(s)	56, 127, 502, 586
BspPI	GGATC	2 cut(s)	49, 62
BspQI	GCTCTTC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	502, 530, 548
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	6 cut(s)	36, 327, 376, 412, 517, 580
BssMI	GATC	4 cut(s)	22, 54, 171, 571
BssSI	CACGAG	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	327, 580
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	236, 260
Bst6I	CTCTTC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	533
BstDSI	CCRYGG	1 cut(s)	376
BstKTI	GATC	4 cut(s)	25, 57, 174, 574
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	22, 54, 171, 571
BstMCI	CGRYCG	2 cut(s)	235, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	387, 475, 498, 528, 557
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	230, 361, 420, 426, 478
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	22, 54
BstXI	CCANNNNNNTGG	1 cut(s)	383
BstYI	RGATCY	2 cut(s)	22, 54
BsuRI	GGCC	3 cut(s)	80, 390, 579
BtgI	CCRYGG	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	373
BtsI	GCAGTG	2 cut(s)	176, 555
BtsIMutI	CAGTG	4 cut(s)	56, 176, 495, 555
Cac8I	GCNNGC	1 cut(s)	533
CaiI	CAGNNNCTG	1 cut(s)	597
CciI	TCATGA	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	126, 331
Csp6I	GTAC	3 cut(s)	10, 136, 261
CviAII	CATG	4 cut(s)	82, 251, 275, 319
CviQI	GTAC	3 cut(s)	10, 136, 261
DpnI	GATC	4 cut(s)	24, 56, 173, 573
DpnII	GATC	4 cut(s)	22, 54, 171, 571
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	327, 580
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	2 cut(s)	533, 570
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	2 cut(s)	126, 331
Eco53kI	GAGCTC	1 cut(s)	531
Eco88I	CYCGRG	2 cut(s)	413, 422
EcoICRI	GAGCTC	1 cut(s)	531
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	327, 580
EcoT38I	GRGCYC	2 cut(s)	533, 570
ErhI	CCWWGG	2 cut(s)	327, 580
FaeI	CATG	4 cut(s)	85, 254, 278, 322
FaiI	YATR	4 cut(s)	83, 252, 276, 320
FatI	CATG	4 cut(s)	81, 250, 274, 318
FauI	CCCGC	2 cut(s)	125, 596
Fnu4HI	GCNGC	7 cut(s)	244, 347, 350, 409, 440, 467, 552
FriOI	GRGCYC	2 cut(s)	533, 570
Fsp4HI	GCNGC	7 cut(s)	244, 347, 350, 409, 440, 467, 552
FspBI	CTAG	2 cut(s)	360, 536
GluI	GCNGC	7 cut(s)	244, 347, 350, 409, 440, 467, 552
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	3 cut(s)	419, 472, 547
HaeIII	GGCC	3 cut(s)	80, 390, 579
HapII	CCGG	2 cut(s)	129, 300
Hin1II	CATG	4 cut(s)	85, 254, 278, 322
HinfI	GANTC	3 cut(s)	46, 194, 430
HpaII	CCGG	2 cut(s)	129, 300
HphI	GGTGA	2 cut(s)	220, 464
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	310, 397, 405
Hpy188III	TCNNGA	3 cut(s)	73, 319, 422
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	70, 454, 514
HpyCH4III	ACNGT	2 cut(s)	236, 260
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	4, 105, 466
HpyF10VI	GCNNNNNNNGC	5 cut(s)	387, 475, 498, 528, 557
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	4 cut(s)	85, 254, 278, 322
Kzo9I	GATC	4 cut(s)	22, 54, 171, 571
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	6 cut(s)	251, 271, 372, 506, 528, 590
Lsp1109I	GCAGC	5 cut(s)	230, 361, 420, 426, 478
MaeI	CTAG	2 cut(s)	360, 536
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	236, 539
MalI	GATC	4 cut(s)	24, 56, 173, 573
MboI	GATC	4 cut(s)	22, 54, 171, 571
MboII	GAAGA	5 cut(s)	32, 97, 150, 153, 575
MflI	RGATCY	2 cut(s)	22, 54
MhlI	GDGCHC	2 cut(s)	533, 570
MluCI	AATT	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	333
MseI	TTAA	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	243, 439
MspI	CCGG	2 cut(s)	129, 300
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	2 cut(s)	107, 468
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	387, 475, 498, 528, 557
NdeII	GATC	4 cut(s)	22, 54, 171, 571
NlaIII	CATG	4 cut(s)	85, 254, 278, 322
NlaIV	GGNNCC	4 cut(s)	56, 127, 502, 586
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	318
PceI	AGGCCT	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 519
PctI	GAATGC	2 cut(s)	107, 468
PfeI	GAWTC	2 cut(s)	46, 430
PkrI	GCNGC	7 cut(s)	245, 348, 351, 410, 441, 468, 553
Ple19I	CGATCG	1 cut(s)	574
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	4 cut(s)	56, 127, 502, 586
PspPI	GGNCC	2 cut(s)	126, 331
PstNI	CAGNNNCTG	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	22, 54
PvuI	CGATCG	1 cut(s)	574
PvuII	CAGCTG	2 cut(s)	243, 439
RsaI	GTAC	3 cut(s)	11, 137, 262
RsaNI	GTAC	3 cut(s)	10, 136, 261
SacI	GAGCTC	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	7 cut(s)	244, 347, 350, 409, 440, 467, 552
Sau3AI	GATC	4 cut(s)	22, 54, 171, 571
Sau96I	GGNCC	2 cut(s)	126, 331
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	533, 570
SetI	ASST	9 cut(s)	155, 245, 318, 336, 375, 441, 519, 533, 541
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	2 cut(s)	126, 331
SlaI	CTCGAG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	1 cut(s)	509
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	5 cut(s)	13, 132, 347, 552, 589
SspMI	CTAG	2 cut(s)	360, 536
SstI	GAGCTC	1 cut(s)	533
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	327, 580
TaaI	ACNGT	2 cut(s)	236, 260
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	7 cut(s)	62, 170, 192, 423, 507, 513, 574
TasI	AATT	1 cut(s)	509
TauI	GCSGC	2 cut(s)	349, 554
TfiI	GAWTC	2 cut(s)	46, 430
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	4 cut(s)	56, 183, 502, 562
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	5 cut(s)	243, 349, 408, 439, 466
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	98, 108
TspRI	CASTG	4 cut(s)	56, 183, 502, 562
VpaK11BI	GGWCC	2 cut(s)	126, 331
VspI	ATTAAT	1 cut(s)	90
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	2 cut(s)	360, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.