FvH4_6g06070

Protein CUP-SHAPED COTYLEDON 2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
3461392 .. 3463933
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06070.t1

Sequence Viewer

Length: 978 bp
ATGGAGCTAGGTTTCTCTCCAAACCAAAAACCCTATCAAACGGAGCTCATGATCAACCTCGAGGACAGCCAACTGCCTCCAGGGTTTCGCTTCCACCCTACTGACGAGGAACTCATCGGCTACTATCTCCTTAGGAAGGTCATGGACTCCAACTTCACCTGTCGTGCCATAACCCAAGTTGACCTCAACAAGTGCGAGCCGTGGCAGCTCCCTGAGAAAGCAAAAATGGGGGAGAAAGAGTGGTACTTGTTCAGCCTGCGCGACAAGAAATACCCGACCGGAATTCGCACCAACCGTGCCACTGAAGCCGGGTACTGGAAAGCCACCGGGAAAGACCGAGAGATTTTCAGCTCCAAGACTGGTTCCCTTCTTGGAATGAGGAAGACTTTGGTTTTTTACCACGGCCGAGCTCCCAACGGTATGAAGAGTAACTGGGTCATGCACGAGTACCGCCTTGAATGTCGATTTGCTTACAGACACCTCCTCAGGAACTCCCAGGAGTGGGTGATTTCGAGGGTGTTCCAGAAGTTCAAGAAGAGCAATGGACCCGAATGCAAGAAGATCCGAATGATTGCTGAGCCCAGCTCGCCTGCTTCTTCCTCGGTCTCACTGCCACTACTTTTCGACTCCTCCCCTTACTTCTCCAACGGCAATGCTAATTCCCTCACCGACCGTGACAGCTGCTCCCATGACAACCGTACCCCGAGGGATCACGTGTCCTGTTTCTCCACCATCGCCAACACCGCCACTTTCAACCATCTCATGACTTCCTCGGACCTCGCTCCGCCTCCGCAGCCGCCCACTCCTTCGTTACACGGCTTCGGTGGCCTCTCGGACTTTCCGAGCCTCAGGTCTCTCCAGGAGAATCTCCAGCTGCCCCTCTTTTTCCCGCAGGGAATGCAGCCTCTTCAGCCCTACTCCAGCACCAGTGGCTCCTTCGACCTCGGAGACTGGAGCTCGCTAGGAAACTGGCGCTGA

Protein Analysis

326

Amino Acids

37.08

Weight (kDa)

8.93

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 26 - 152 3.6e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 59
AccII CGCG 1 cut(s) 261
AciI CCGC 6 cut(s) 451, 744, 785, 791, 797, 890
AclWI GGATC 2 cut(s) 556, 717
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 2 cut(s) 324, 893
AcvI CACGTG 1 cut(s) 715
AfaI GTAC 4 cut(s) 245, 314, 449, 700
AfiI CCNNNNNNNGG 4 cut(s) 136, 315, 501, 502
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 3 cut(s) 458, 532, 754
AjnI CCWGG 3 cut(s) 79, 495, 858
AluBI AGCT 9 cut(s) 7, 46, 208, 351, 410, 585, 681, 874, 957
AluI AGCT 9 cut(s) 7, 46, 208, 351, 410, 585, 681, 874, 957
Alw21I GWGCWC 3 cut(s) 48, 412, 959
Alw26I GTCTC 3 cut(s) 610, 858, 942
AlwI GGATC 2 cut(s) 556, 717
Ama87I CYCGRG 2 cut(s) 59, 703
AoxI GGCC 2 cut(s) 403, 826
ApeKI GCWGC 5 cut(s) 205, 681, 793, 874, 901
ApoI RAATTY 1 cut(s) 282
AspLEI GCGC 2 cut(s) 261, 975
AspS9I GGNCC 2 cut(s) 545, 775
AsuC2I CCSGG 2 cut(s) 310, 328
AsuHPI GGTGA 3 cut(s) 148, 517, 658
AvaI CYCGRG 2 cut(s) 59, 703
AvaII GGWCC 2 cut(s) 545, 775
AxyI CCTNAGG 3 cut(s) 131, 485, 848
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanII GRGCYC 4 cut(s) 48, 412, 582, 959
BauI CACGAG 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 3 cut(s) 48, 412, 959
BbvI GCAGC 5 cut(s) 217, 668, 805, 861, 913
BccI CCATC 2 cut(s) 740, 765
BceAI ACGGC 4 cut(s) 184, 418, 664, 832
BciT130I CCWGG 3 cut(s) 81, 497, 860
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 2 cut(s) 310, 328
BcoDI GTCTC 3 cut(s) 610, 858, 942
BfaI CTAG 2 cut(s) 8, 962
BfoI RGCGCY 1 cut(s) 976
BisI GCNGC 6 cut(s) 206, 682, 794, 797, 875, 902
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 6 cut(s) 207, 683, 795, 798, 876, 903
Bme1390I CCNGG 5 cut(s) 81, 310, 328, 497, 860
Bme18I GGWCC 2 cut(s) 545, 775
BmeT110I CYCGRG 2 cut(s) 59, 703
BmgT120I GGNCC 2 cut(s) 545, 775
BmiI GGNNCC 3 cut(s) 364, 547, 934
BmrFI CCNGG 5 cut(s) 81, 310, 328, 497, 860
BmrI ACTGGG 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpmI CTGGAG 5 cut(s) 63, 842, 854, 904, 973
Bpu1102I GCTNAGC 1 cut(s) 576
BpuMI CCSGG 2 cut(s) 310, 328
BsaAI YACGTR 1 cut(s) 715
BsaI GGTCTC 2 cut(s) 610, 858
BsaJI CCNNGG 8 cut(s) 80, 200, 400, 495, 600, 704, 771, 943
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 668, 698
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 315, 501, 502
Bse1I ACTGG 6 cut(s) 320, 364, 437, 927, 956, 974
Bse21I CCTNAGG 3 cut(s) 131, 485, 848
Bse3DI GCAATG 2 cut(s) 547, 658
BseBI CCWGG 3 cut(s) 81, 497, 860
BseDI CCNNGG 8 cut(s) 80, 200, 400, 495, 600, 704, 771, 943
BseLI CCNNNNNNNGG 4 cut(s) 136, 315, 501, 502
BseMI GCAATG 2 cut(s) 547, 658
BseMII CTCAG 4 cut(s) 204, 499, 567, 862
BseNI ACTGG 6 cut(s) 320, 364, 437, 927, 956, 974
BseRI GAGGAG 2 cut(s) 473, 619
BseX3I CGGCCG 1 cut(s) 403
BseXI GCAGC 5 cut(s) 217, 668, 805, 861, 913
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 3 cut(s) 279, 406, 673
BshFI GGCC 2 cut(s) 405, 828
BsiEI CGRYCG 3 cut(s) 279, 406, 673
BsiHKAI GWGCWC 3 cut(s) 48, 412, 959
BsiHKCI CYCGRG 2 cut(s) 59, 703
BsiSI CCGG 3 cut(s) 279, 309, 327
BslI CCNNNNNNNGG 4 cut(s) 136, 315, 501, 502
BsmAI GTCTC 3 cut(s) 610, 858, 942
BsmI GAATGC 2 cut(s) 557, 903
BsnI GGCC 2 cut(s) 405, 828
Bso31I GGTCTC 2 cut(s) 610, 858
BsoBI CYCGRG 2 cut(s) 59, 703
Bsp1286I GDGCHC 4 cut(s) 48, 412, 582, 959
Bsp143I GATC 3 cut(s) 51, 561, 709
Bsp1720I GCTNAGC 1 cut(s) 576
BspACI CCGC 6 cut(s) 451, 744, 785, 791, 797, 890
BspANI GGCC 2 cut(s) 405, 828
BspCNI CTCAG 4 cut(s) 205, 498, 568, 861
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 2 cut(s) 48, 762
BspLI GGNNCC 3 cut(s) 364, 547, 934
BspPI GGATC 2 cut(s) 556, 717
BspQI GCTCTTC 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 610, 858
BsrDI GCAATG 2 cut(s) 547, 658
BsrI ACTGG 6 cut(s) 320, 364, 437, 927, 956, 974
BssECI CCNNGG 8 cut(s) 80, 200, 400, 495, 600, 704, 771, 943
BssMI GATC 3 cut(s) 51, 561, 709
BssSI CACGAG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 81, 497, 860
Bst4CI ACNGT 4 cut(s) 296, 419, 674, 698
Bst6I CTCTTC 3 cut(s) 419, 530, 912
BstAPI GCANNNNNTGC 1 cut(s) 898
BstBAI YACGTR 1 cut(s) 715
BstC8I GCNNGC 5 cut(s) 197, 257, 587, 591, 959
BstDEI CTNAG 5 cut(s) 131, 213, 485, 576, 848
BstDSI CCRYGG 2 cut(s) 200, 400
BstENI CCTNNNNNAGG 1 cut(s) 134
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 976
BstHHI GCGC 2 cut(s) 261, 975
BstKTI GATC 3 cut(s) 54, 564, 712
BstMAI GTCTC 3 cut(s) 610, 858, 942
BstMBI GATC 3 cut(s) 51, 561, 709
BstMCI CGRYCG 3 cut(s) 279, 406, 673
BstMWI GCNNNNNNNGC 9 cut(s) 205, 305, 586, 743, 793, 825, 898, 910, 930
BstNI CCWGG 3 cut(s) 81, 497, 860
BstSCI CCNGG 5 cut(s) 79, 308, 326, 495, 858
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 5 cut(s) 217, 668, 805, 861, 913
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BstZI CGGCCG 1 cut(s) 403
Bsu36I CCTNAGG 3 cut(s) 131, 485, 848
BsuRI GGCC 2 cut(s) 405, 828
BtgI CCRYGG 2 cut(s) 200, 400
BtgZI GCGATG 1 cut(s) 718
BtsI GCAGTG 1 cut(s) 608
BtsIMutI CAGTG 3 cut(s) 300, 608, 934
Cac8I GCNNGC 5 cut(s) 197, 257, 587, 591, 959
CciI TCATGA 2 cut(s) 48, 762
CfoI GCGC 2 cut(s) 261, 975
Cfr13I GGNCC 2 cut(s) 545, 775
Csp6I GTAC 4 cut(s) 244, 313, 448, 699
CviAII CATG 5 cut(s) 49, 142, 439, 689, 763
CviQI GTAC 4 cut(s) 244, 313, 448, 699
DdeI CTNAG 5 cut(s) 131, 213, 485, 576, 848
DpnI GATC 3 cut(s) 53, 563, 711
DpnII GATC 3 cut(s) 51, 561, 709
EaeI YGGCCR 1 cut(s) 403
EagI CGGCCG 1 cut(s) 403
Eam1104I CTCTTC 3 cut(s) 419, 530, 912
EarI CTCTTC 3 cut(s) 419, 530, 912
EciI GGCGGA 1 cut(s) 774
Ecl136II GAGCTC 3 cut(s) 46, 410, 957
EclXI CGGCCG 1 cut(s) 403
Eco24I GRGCYC 4 cut(s) 48, 412, 582, 959
Eco31I GGTCTC 2 cut(s) 610, 858
Eco47I GGWCC 2 cut(s) 545, 775
Eco52I CGGCCG 1 cut(s) 403
Eco53kI GAGCTC 3 cut(s) 46, 410, 957
Eco57I CTGAAG 2 cut(s) 324, 893
Eco72I CACGTG 1 cut(s) 715
Eco81I CCTNAGG 3 cut(s) 131, 485, 848
Eco88I CYCGRG 2 cut(s) 59, 703
EcoICRI GAGCTC 3 cut(s) 46, 410, 957
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 282
EcoRII CCWGG 3 cut(s) 79, 495, 858
EcoT38I GRGCYC 4 cut(s) 48, 412, 582, 959
FaeI CATG 5 cut(s) 52, 145, 442, 692, 766
FaiI YATR 7 cut(s) 50, 143, 170, 422, 440, 690, 764
FatI CATG 5 cut(s) 48, 141, 438, 688, 762
FauI CCCGC 1 cut(s) 897
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 6 cut(s) 206, 682, 794, 797, 875, 902
FriOI GRGCYC 4 cut(s) 48, 412, 582, 959
Fsp4HI GCNGC 6 cut(s) 206, 682, 794, 797, 875, 902
FspBI CTAG 2 cut(s) 8, 962
GlaI GCGC 2 cut(s) 260, 974
GluI GCNGC 6 cut(s) 206, 682, 794, 797, 875, 902
GsaI CCCAGC 1 cut(s) 585
GsuI CTGGAG 5 cut(s) 63, 842, 854, 904, 973
HaeII RGCGCY 1 cut(s) 976
HaeIII GGCC 2 cut(s) 405, 828
HapII CCGG 3 cut(s) 279, 309, 327
HhaI GCGC 2 cut(s) 261, 975
Hin1II CATG 5 cut(s) 52, 145, 442, 692, 766
Hin6I GCGC 2 cut(s) 259, 973
HinP1I GCGC 2 cut(s) 259, 973
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 3 cut(s) 146, 626, 865
HpaII CCGG 3 cut(s) 279, 309, 327
HphI GGTGA 3 cut(s) 148, 517, 658
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 566, 775, 835, 843, 947
Hpy188III TCNNGA 5 cut(s) 49, 487, 523, 532, 763
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 4 cut(s) 130, 377, 816, 946
HpyCH4III ACNGT 4 cut(s) 296, 419, 674, 698
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 3 cut(s) 442, 555, 901
HpyF10VI GCNNNNNNNGC 9 cut(s) 205, 305, 586, 743, 793, 825, 898, 910, 930
HpyF3I CTNAG 5 cut(s) 131, 213, 485, 576, 848
HpySE526I ACGT 1 cut(s) 714
Hsp92II CATG 5 cut(s) 52, 145, 442, 692, 766
HspAI GCGC 2 cut(s) 259, 973
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 3 cut(s) 51, 561, 709
LguI GCTCTTC 1 cut(s) 530
LmnI GCTCC 9 cut(s) 4, 43, 213, 356, 415, 689, 787, 938, 954
Lsp1109I GCAGC 5 cut(s) 217, 668, 805, 861, 913
MaeI CTAG 2 cut(s) 8, 962
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 3 cut(s) 428, 674, 810
MalI GATC 3 cut(s) 53, 563, 711
MboI GATC 3 cut(s) 51, 561, 709
MboII GAAGA 6 cut(s) 394, 436, 547, 571, 588, 899
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 4 cut(s) 48, 412, 582, 959
MluCI AATT 2 cut(s) 282, 658
MlyI GAGTC 2 cut(s) 140, 620
MmeI TCCRAC 2 cut(s) 174, 669
MspA1I CMGCKG 2 cut(s) 681, 874
MspI CCGG 3 cut(s) 279, 309, 327
MspR9I CCNGG 5 cut(s) 81, 310, 328, 497, 860
Mva1269I GAATGC 2 cut(s) 557, 903
MvaI CCWGG 3 cut(s) 81, 497, 860
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 9 cut(s) 205, 305, 586, 743, 793, 825, 898, 910, 930
NciI CCSGG 2 cut(s) 310, 328
NdeII GATC 3 cut(s) 51, 561, 709
NlaIII CATG 5 cut(s) 52, 145, 442, 692, 766
NlaIV GGNNCC 3 cut(s) 364, 547, 934
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 59
PagI TCATGA 2 cut(s) 48, 762
PciSI GCTCTTC 1 cut(s) 530
PcsI WCGNNNNNNNCGW 2 cut(s) 292, 839
PctI GAATGC 2 cut(s) 557, 903
PfeI GAWTC 1 cut(s) 865
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 6 cut(s) 207, 683, 795, 798, 876, 903
PleI GAGTC 2 cut(s) 140, 620
PmaCI CACGTG 1 cut(s) 715
PmlI CACGTG 1 cut(s) 715
PpsI GAGTC 2 cut(s) 140, 620
Ppu21I YACGTR 1 cut(s) 715
Psp124BI GAGCTC 3 cut(s) 48, 412, 959
Psp6I CCWGG 3 cut(s) 79, 495, 858
PspCI CACGTG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 3 cut(s) 79, 495, 858
PspN4I GGNNCC 3 cut(s) 364, 547, 934
PspPI GGNCC 2 cut(s) 545, 775
PspXI VCTCGAGB 1 cut(s) 59
PsuI RGATCY 1 cut(s) 561
PvuII CAGCTG 2 cut(s) 681, 874
RsaI GTAC 4 cut(s) 245, 314, 449, 700
RsaNI GTAC 4 cut(s) 244, 313, 448, 699
SacI GAGCTC 3 cut(s) 48, 412, 959
SapI GCTCTTC 1 cut(s) 530
SatI GCNGC 6 cut(s) 206, 682, 794, 797, 875, 902
Sau3AI GATC 3 cut(s) 51, 561, 709
Sau96I GGNCC 2 cut(s) 545, 775
SchI GAGTC 2 cut(s) 140, 620
ScrFI CCNGG 5 cut(s) 81, 310, 328, 497, 860
SduI GDGCHC 4 cut(s) 48, 412, 582, 959
Sfr274I CTCGAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 545, 775
SlaI CTCGAG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 282, 658
SsiI CCGC 6 cut(s) 451, 744, 785, 791, 797, 890
SspMI CTAG 2 cut(s) 8, 962
SstI GAGCTC 3 cut(s) 48, 412, 959
StyD4I CCNGG 5 cut(s) 79, 308, 326, 495, 858
TaaI ACNGT 4 cut(s) 296, 419, 674, 698
TaiI ACGT 1 cut(s) 717
TaqI TCGA 5 cut(s) 60, 463, 512, 624, 939
TaqII GACCGA 2 cut(s) 351, 592
TasI AATT 2 cut(s) 282, 658
TauI GCSGC 1 cut(s) 799
TfiI GAWTC 1 cut(s) 865
TscAI CASTG 3 cut(s) 307, 615, 934
TseFI GTSAC 1 cut(s) 674
TseI GCWGC 5 cut(s) 205, 681, 793, 874, 901
Tsp45I GTSAC 1 cut(s) 674
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 3 cut(s) 307, 615, 934
VpaK11BI GGWCC 2 cut(s) 545, 775
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 59
XspI CTAG 2 cut(s) 8, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.