Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012907

Physical Location & Seq

Genomic Coordinates Forward (+)

12584443 .. 12587396

Gene Structure 2954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19410.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACTCCAACTTCACCTGTCGCGCCATAGCCGAAGTTGACCTCAACAAGTGCGAGCCGTGGCAGCTCCCTGAGAAAGCAAAACTGGGGGAGAAAGAGTGGTACTTCTTCAGCCTTCGTGATCGGAAATACCCTACCGGACTTCGCACCAACCGTGCCACTGAAGCCGGGTACTGGAAAGCCACCGGGAAAGACCGAGAGATTTACAGCTCCAGGACTTGTTCGCTTCTTGGAATGAAGAAGACTTTGGTTTTTTACCGCGGGCGAGCTCCCAAGGGTGTAAAAAGTAACTGGGTCATGCACGAGTATCGCCTTGAAGGTCGATTTTCTTACAATTACCTCCCCAGGAACTCCCAGGAAGAGTGGGTCATTTCGAGGGTCTTCGAGAAGGCCAAGAAGAGCAACGGACCCGATTGCAAGAAGACCCGAATGATTGAGCCCAGCTCGCCTTCTTCCTCCTCGGTCTCACAGCTGCCACCACTCTTCGACTCCTCCCCTTACTACCCAACCGCTCCTTTCTCCAATGATGCTTCCCTCACCGACCGTGACAGCTGCTCCCATGACAACCGCACCCCTAGGGAGCACGTGTCCTGTTTCTCCACCGGCAGCGACCCCGCCAACACCGGCACCTTCAACCATCTCATGACTTCCTTGGACCTCGCTCCGCCGCCGCAGCCCCAGACTACTTCCCTCCACTTGTCTGGCGGCTTCGGCGGCCTCTCGGACTTTCCGAGCCTCAGGTCTCTCCAGGAGAATCTCCAGCTGCCCTTCTTCTTCCAGCAGGGAATGCAGCCTGATCAGCCCTACTCCAACACCGCTGGCTCCTTCGACCTCGGCGACTGGAGCTCGCTCGGAAATAACTGGCGTGCCGCCGCTGCAGAAGAGCCCAAGACCTTGGCTCCGGCCGAGGCTGATTGCATGTGGACGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

311

Amino Acids

34.97

Weight (kDa)

7.57

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 147	2.1e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53950
fragaria_vesca	FvH4_3g03540 FvH4_3g03540 FvH4_3g03580 FvH4_3g19410 FvH4_3g19410 FvH4_6g06070
rosa_chinensis	RchiOBHm_Chr5g0032661
rosa_laevigata	RLG00000033416
rosa_multiflora	Rmu_sc0002292.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047410 Rroxscaffold_1G00047870
rosa_rugosa	Rorug05G0133000
rosa_samantha	Rh5AG225500 Rh5BG226700 Rh5CG254200 Rh5DG231300
rosa_wichuraiana	Rw5G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	512
AccII	CGCG	2 cut(s)	24, 261
AcoI	YGGCCR	1 cut(s)	903
AcuI	CTGAAG	2 cut(s)	94, 183
AcvI	CACGTG	1 cut(s)	586
AfaI	GTAC	3 cut(s)	104, 173, 929
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	317, 634
AjnI	CCWGG	4 cut(s)	212, 344, 354, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	8 cut(s)	67, 210, 269, 444, 472, 552, 763, 846
AluI	AGCT	8 cut(s)	67, 210, 269, 444, 472, 552, 763, 846
Alw21I	GWGCWC	3 cut(s)	271, 585, 848
Alw26I	GTCTC	2 cut(s)	469, 747
AoxI	GGCC	3 cut(s)	390, 715, 903
ApeKI	GCWGC	8 cut(s)	64, 472, 552, 606, 673, 763, 790, 875
AspA2I	CCTAGG	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	407, 655
AsuC2I	CCSGG	2 cut(s)	169, 187
AsuHPI	GGTGA	2 cut(s)	7, 529
AvaII	GGWCC	2 cut(s)	407, 655
AvrII	CCTAGG	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	4 cut(s)	271, 441, 848, 888
BauI	CACGAG	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	586
BbsI	GAAGAC	3 cut(s)	248, 373, 428
Bbv12I	GWGCWC	3 cut(s)	271, 585, 848
BbvI	GCAGC	8 cut(s)	76, 459, 539, 618, 685, 750, 802, 862
BccI	CCATC	1 cut(s)	645
BceAI	ACGGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	4 cut(s)	214, 346, 356, 749
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	169, 187
BcoDI	GTCTC	2 cut(s)	469, 747
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	876
BlnI	CCTAGG	1 cut(s)	575
Bme1390I	CCNGG	6 cut(s)	169, 187, 214, 346, 356, 749
Bme18I	GGWCC	2 cut(s)	407, 655
BmgT120I	GGNCC	2 cut(s)	407, 655
BmiI	GGNNCC	4 cut(s)	409, 628, 823, 900
BmrFI	CCNGG	6 cut(s)	169, 187, 214, 346, 356, 749
BmrI	ACTGGG	2 cut(s)	95, 301
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	2 cut(s)	95, 301
BpiI	GAAGAC	3 cut(s)	248, 373, 428
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	4 cut(s)	196, 731, 743, 862
BpuMI	CCSGG	2 cut(s)	169, 187
BsaAI	YACGTR	1 cut(s)	586
BsaI	GGTCTC	2 cut(s)	469, 747
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	8 cut(s)	83, 113, 539, 569, 572, 602, 883, 913
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	2 cut(s)	602, 623
Bse1I	ACTGG	5 cut(s)	90, 179, 296, 845, 866
Bse21I	CCTNAGG	1 cut(s)	737
BseBI	CCWGG	4 cut(s)	214, 346, 356, 749
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	63, 751
BseNI	ACTGG	5 cut(s)	90, 179, 296, 845, 866
BseRI	GAGGAG	2 cut(s)	448, 481
BseX3I	CGGCCG	1 cut(s)	903
BseXI	GCAGC	8 cut(s)	76, 459, 539, 618, 685, 750, 802, 862
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	2 cut(s)	24, 261
Bsh1285I	CGRYCG	2 cut(s)	544, 906
BshFI	GGCC	3 cut(s)	392, 717, 905
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	2 cut(s)	544, 906
BsiHKAI	GWGCWC	3 cut(s)	271, 585, 848
BsiSI	CCGG	6 cut(s)	138, 168, 186, 603, 624, 902
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	469, 747
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	3 cut(s)	392, 717, 905
Bso31I	GGTCTC	2 cut(s)	469, 747
Bsp1286I	GDGCHC	5 cut(s)	271, 441, 585, 848, 888
Bsp143I	GATC	2 cut(s)	121, 796
BspANI	GGCC	3 cut(s)	392, 717, 905
BspCNI	CTCAG	2 cut(s)	64, 750
BspFNI	CGCG	2 cut(s)	24, 261
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	4 cut(s)	409, 628, 823, 900
BspMAI	CTGCAG	1 cut(s)	880
BspQI	GCTCTTC	2 cut(s)	392, 876
BspT107I	GGYRCC	1 cut(s)	626
BspTNI	GGTCTC	2 cut(s)	469, 747
BsrBI	CCGCTC	1 cut(s)	512
BsrFI	RCCGGY	2 cut(s)	602, 623
BsrI	ACTGG	5 cut(s)	90, 179, 296, 845, 866
BssAI	RCCGGY	2 cut(s)	602, 623
BssMI	GATC	2 cut(s)	121, 796
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	4 cut(s)	273, 575, 651, 894
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	4 cut(s)	214, 346, 356, 749
Bst4CI	ACNGT	2 cut(s)	155, 545
Bst6I	CTCTTC	4 cut(s)	354, 392, 488, 876
BstAPI	GCANNNNNTGC	1 cut(s)	787
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	7 cut(s)	56, 263, 267, 446, 820, 848, 867
BstDEI	CTNAG	2 cut(s)	72, 737
BstDSI	CCRYGG	2 cut(s)	59, 259
BstFNI	CGCG	2 cut(s)	24, 261
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	124, 799
BstMAI	GTCTC	2 cut(s)	469, 747
BstMBI	GATC	2 cut(s)	121, 796
BstMCI	CGRYCG	2 cut(s)	544, 906
BstNI	CCWGG	4 cut(s)	214, 346, 356, 749
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	6 cut(s)	167, 185, 212, 344, 354, 747
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	2 cut(s)	24, 261
BstV1I	GCAGC	8 cut(s)	76, 459, 539, 618, 685, 750, 802, 862
BstV2I	GAAGAC	3 cut(s)	248, 373, 428
BstXI	CCANNNNNNTGG	2 cut(s)	701, 895
BstZI	CGGCCG	1 cut(s)	903
Bsu36I	CCTNAGG	1 cut(s)	737
BsuRI	GGCC	3 cut(s)	392, 717, 905
BtgI	CCRYGG	2 cut(s)	59, 259
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	7 cut(s)	56, 263, 267, 446, 820, 848, 867
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	2 cut(s)	602, 623
Cfr13I	GGNCC	2 cut(s)	407, 655
Cfr42I	CCGCGG	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	103, 172, 928
CviAII	CATG	4 cut(s)	298, 560, 643, 919
CviQI	GTAC	3 cut(s)	103, 172, 928
DdeI	CTNAG	2 cut(s)	72, 737
DpnI	GATC	2 cut(s)	123, 798
DpnII	GATC	2 cut(s)	121, 796
EaeI	YGGCCR	1 cut(s)	903
EagI	CGGCCG	1 cut(s)	903
Eam1104I	CTCTTC	4 cut(s)	354, 392, 488, 876
EarI	CTCTTC	4 cut(s)	354, 392, 488, 876
EciI	GGCGGA	1 cut(s)	654
Ecl136II	GAGCTC	2 cut(s)	269, 846
EclXI	CGGCCG	1 cut(s)	903
Eco130I	CCWWGG	4 cut(s)	273, 575, 651, 894
Eco24I	GRGCYC	4 cut(s)	271, 441, 848, 888
Eco31I	GGTCTC	2 cut(s)	469, 747
Eco47I	GGWCC	2 cut(s)	407, 655
Eco52I	CGGCCG	1 cut(s)	903
Eco53kI	GAGCTC	2 cut(s)	269, 846
Eco57I	CTGAAG	2 cut(s)	94, 183
Eco72I	CACGTG	1 cut(s)	586
Eco81I	CCTNAGG	1 cut(s)	737
EcoICRI	GAGCTC	2 cut(s)	269, 846
EcoRII	CCWGG	4 cut(s)	212, 344, 354, 747
EcoT14I	CCWWGG	4 cut(s)	273, 575, 651, 894
EcoT38I	GRGCYC	4 cut(s)	271, 441, 848, 888
ErhI	CCWWGG	4 cut(s)	273, 575, 651, 894
FaeI	CATG	4 cut(s)	301, 563, 646, 922
FaiI	YATR	5 cut(s)	29, 299, 561, 644, 920
FatI	CATG	4 cut(s)	297, 559, 642, 918
FauI	CCCGC	2 cut(s)	254, 622
FbaI	TGATCA	1 cut(s)	796
FriOI	GRGCYC	4 cut(s)	271, 441, 848, 888
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	1 cut(s)	25
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	4 cut(s)	196, 731, 743, 862
HaeIII	GGCC	3 cut(s)	392, 717, 905
HapII	CCGG	6 cut(s)	138, 168, 186, 603, 624, 902
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	301, 563, 646, 922
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	5, 488, 754
HpaII	CCGG	6 cut(s)	138, 168, 186, 603, 624, 902
HphI	GGTGA	2 cut(s)	7, 529
Hpy166II	GTNNAC	2 cut(s)	40, 924
Hpy188I	TCNGA	4 cut(s)	126, 724, 732, 854
Hpy188III	TCNNGA	3 cut(s)	119, 385, 643
Hpy8I	GTNNAC	2 cut(s)	40, 924
HpyAV	CCTTC	7 cut(s)	125, 311, 382, 459, 640, 778, 835
HpyCH4III	ACNGT	2 cut(s)	155, 545
HpyCH4IV	ACGT	2 cut(s)	585, 926
HpyCH4V	TGCA	5 cut(s)	301, 417, 790, 878, 918
HpyF3I	CTNAG	2 cut(s)	72, 737
HpySE526I	ACGT	2 cut(s)	585, 926
Hsp92II	CATG	4 cut(s)	301, 563, 646, 922
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	121, 796
LguI	GCTCTTC	2 cut(s)	392, 876
Lsp1109I	GCAGC	8 cut(s)	76, 459, 539, 618, 685, 750, 802, 862
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	2 cut(s)	585, 926
MaeIII	GTNAC	2 cut(s)	287, 545
MalI	GATC	2 cut(s)	123, 798
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	2 cut(s)	121, 796
MhlI	GDGCHC	5 cut(s)	271, 441, 585, 848, 888
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	33, 834
MspA1I	CMGCKG	6 cut(s)	261, 472, 552, 763, 818, 875
MspI	CCGG	6 cut(s)	138, 168, 186, 603, 624, 902
MspR9I	CCNGG	6 cut(s)	169, 187, 214, 346, 356, 749
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	4 cut(s)	214, 346, 356, 749
MvnI	CGCG	2 cut(s)	24, 261
NciI	CCSGG	2 cut(s)	169, 187
NdeII	GATC	2 cut(s)	121, 796
NlaIII	CATG	4 cut(s)	301, 563, 646, 922
NlaIV	GGNNCC	4 cut(s)	409, 628, 823, 900
NmeAIII	GCCGAG	2 cut(s)	813, 931
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	922
PagI	TCATGA	1 cut(s)	642
PciSI	GCTCTTC	2 cut(s)	392, 876
PcsI	WCGNNNNNNNCGW	3 cut(s)	151, 728, 834
PctI	GAATGC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	754
PfoI	TCCNGGA	2 cut(s)	212, 747
PleI	GAGTC	1 cut(s)	482
PmaCI	CACGTG	1 cut(s)	586
PmlI	CACGTG	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	586
Psp124BI	GAGCTC	2 cut(s)	271, 848
Psp6I	CCWGG	4 cut(s)	212, 344, 354, 747
PspCI	CACGTG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	4 cut(s)	212, 344, 354, 747
PspN4I	GGNNCC	4 cut(s)	409, 628, 823, 900
PspPI	GGNCC	2 cut(s)	407, 655
PstI	CTGCAG	1 cut(s)	880
PvuII	CAGCTG	3 cut(s)	472, 552, 763
RsaI	GTAC	3 cut(s)	104, 173, 929
RsaNI	GTAC	3 cut(s)	103, 172, 928
SacI	GAGCTC	2 cut(s)	271, 848
SacII	CCGCGG	1 cut(s)	262
SapI	GCTCTTC	2 cut(s)	392, 876
Sau3AI	GATC	2 cut(s)	121, 796
Sau96I	GGNCC	2 cut(s)	407, 655
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	6 cut(s)	169, 187, 214, 346, 356, 749
SduI	GDGCHC	5 cut(s)	271, 441, 585, 848, 888
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	876
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	407, 655
Sse9I	AATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	2 cut(s)	271, 848
StyD4I	CCNGG	6 cut(s)	167, 185, 212, 344, 354, 747
StyI	CCWWGG	4 cut(s)	273, 575, 651, 894
TaaI	ACNGT	2 cut(s)	155, 545
TaiI	ACGT	2 cut(s)	588, 929
TaqI	TCGA	5 cut(s)	322, 374, 384, 486, 828
TaqII	GACCGA	2 cut(s)	210, 451
TasI	AATT	1 cut(s)	334
TauI	GCSGC	6 cut(s)	670, 673, 708, 717, 872, 875
TfiI	GAWTC	1 cut(s)	754
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	8 cut(s)	64, 472, 552, 606, 673, 763, 790, 875
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	407, 655
XceI	RCATGY	1 cut(s)	922
XmaJI	CCTAGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.