Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012907

Physical Location & Seq

Genomic Coordinates Forward (+)

26981623 .. 26984571

Gene Structure 2949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG225500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATCCCAAAAATGCAGGAAGAGTGGGTCATTTCGAGGGTATTCCAGAAGGCCAAGAAGAGCAATGGACCCGAATCCAAGAAGACCCGAATGATTGGGTCCAGCGGGTACCCAGCCGAGCCCAGCTCGCCTTCTTCCTCCTCTGTCTCACTGCCACCACTTTTCGACTCCTCCCCTTACTACCCAACCGTCCCTTTCTCCAACGGCAATGGTTCCCTCACCGACCGTGACAGCTGCTCCCACGACAACCGTACCCCGAGGGAGCACGTGTCCTGTTTCTCCACCAACAGCGACTCCGCCAACACCGGCACTTTCAACCATCTCATGACTTCCTTGGACCTCGCTCCGCCGCCGCAGCCGCAGACTTCGCTCCACTTGTCTGGCGGCTTCGGCGGCCTCTCGGACTTTCCGAGCCTCAGGTCTCTCCAGGAGAATCTCCACCTGCCCTTCTTCTTCCCGCAGGGACTGCAGCCCCACCAGCCCTACTCCGGGGCCGGTGGCTCCTTCGACCTCGGTGACTGGAGCTCACTCGGAAACTGGCGTGGCGCCGCTGCCGAAGAGCCCAGGGCTGTGGGTCCAACCGAGGCCGATTGCATGTGGACGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0090691 GO:0090709 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:1905428 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

202

Amino Acids

21.89

Weight (kDa)

5.61

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53950
fragaria_vesca	FvH4_3g03540 FvH4_3g03540 FvH4_3g03580 FvH4_3g19410 FvH4_3g19410 FvH4_6g06070
rosa_chinensis	RchiOBHm_Chr5g0032661
rosa_laevigata	RLG00000033416
rosa_multiflora	Rmu_sc0002292.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047410 Rroxscaffold_1G00047870
rosa_rugosa	Rorug05G0133000
rosa_samantha	Rh5AG225500 Rh5BG226700 Rh5CG254200 Rh5DG231300
rosa_wichuraiana	Rw5G020670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	108
AccB1I	GGYRCC	2 cut(s)	108, 545
AcvI	CACGTG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	3 cut(s)	110, 253, 605
AfiI	CCNNNNNNNGG	2 cut(s)	488, 489
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	426, 563
AluBI	AGCT	3 cut(s)	126, 234, 525
AluI	AGCT	3 cut(s)	126, 234, 525
Alw21I	GWGCWC	2 cut(s)	267, 527
Alw26I	GTCTC	2 cut(s)	151, 426
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	51, 394, 492, 585
ApeKI	GCWGC	4 cut(s)	234, 355, 469, 551
Asp718I	GGTACC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	5 cut(s)	68, 99, 337, 492, 575
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	2 cut(s)	211, 527
AvaI	CYCGRG	1 cut(s)	256
AvaII	GGWCC	4 cut(s)	68, 99, 337, 575
AxyI	CCTNAGG	1 cut(s)	416
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	2 cut(s)	108, 545
BanII	GRGCYC	3 cut(s)	123, 527, 564
BbrPI	CACGTG	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	267, 527
BbvI	GCAGC	4 cut(s)	221, 367, 481, 538
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	428, 565
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	151, 426
BfmI	CTRYAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	450
Bme1390I	CCNGG	3 cut(s)	428, 490, 565
Bme18I	GGWCC	4 cut(s)	68, 99, 337, 575
BmeT110I	CYCGRG	1 cut(s)	256
BmgT120I	GGNCC	5 cut(s)	68, 99, 337, 492, 575
BmiI	GGNNCC	8 cut(s)	70, 100, 110, 214, 493, 502, 547, 576
BmrFI	CCNGG	3 cut(s)	428, 490, 565
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	2 cut(s)	410, 541
BpuMI	CCSGG	1 cut(s)	490
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	7 cut(s)	257, 333, 489, 511, 563, 564, 582
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 254, 278, 284, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 489
Bse118I	RCCGGY	2 cut(s)	305, 494
Bse1I	ACTGG	2 cut(s)	524, 542
Bse21I	CCTNAGG	1 cut(s)	416
Bse3DI	GCAATG	2 cut(s)	70, 214
BseBI	CCWGG	2 cut(s)	428, 565
BseDI	CCNNGG	7 cut(s)	257, 333, 489, 511, 563, 564, 582
BseLI	CCNNNNNNNGG	2 cut(s)	488, 489
BseMI	GCAATG	2 cut(s)	70, 214
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	2 cut(s)	524, 542
BseRI	GAGGAG	2 cut(s)	130, 160
BseXI	GCAGC	4 cut(s)	221, 367, 481, 538
BseYI	CCCAGC	2 cut(s)	112, 122
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	4 cut(s)	53, 396, 494, 587
BshNI	GGYRCC	2 cut(s)	108, 545
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	267, 527
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	306, 489, 495
BslFI	GGGAC	2 cut(s)	176, 477
BslI	CCNNNNNNNGG	2 cut(s)	488, 489
BsmAI	GTCTC	2 cut(s)	151, 426
BsmFI	GGGAC	2 cut(s)	176, 477
BsnI	GGCC	4 cut(s)	53, 396, 494, 587
Bso31I	GGTCTC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	4 cut(s)	123, 267, 527, 564
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	4 cut(s)	53, 396, 494, 587
BspCNI	CTCAG	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	8 cut(s)	70, 100, 110, 214, 493, 502, 547, 576
BspMAI	CTGCAG	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	450
BspQI	GCTCTTC	2 cut(s)	53, 552
BspT107I	GGYRCC	2 cut(s)	108, 545
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	2 cut(s)	70, 214
BsrFI	RCCGGY	2 cut(s)	305, 494
BsrI	ACTGG	2 cut(s)	524, 542
BssAI	RCCGGY	2 cut(s)	305, 494
BssECI	CCNNGG	7 cut(s)	257, 333, 489, 511, 563, 564, 582
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	428, 565
Bst4CI	ACNGT	3 cut(s)	190, 227, 251
Bst6I	CTCTTC	3 cut(s)	15, 53, 552
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	151, 426
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	8 cut(s)	127, 355, 358, 367, 390, 393, 466, 478
BstNI	CCWGG	2 cut(s)	428, 565
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	426, 488, 563
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	4 cut(s)	221, 367, 481, 538
BstV2I	GAAGAC	1 cut(s)	89
BstXI	CCANNNNNNTGG	2 cut(s)	380, 571
Bsu36I	CCTNAGG	1 cut(s)	416
BsuRI	GGCC	4 cut(s)	53, 396, 494, 587
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	466
CciI	TCATGA	1 cut(s)	324
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	2 cut(s)	305, 494
Cfr13I	GGNCC	5 cut(s)	68, 99, 337, 492, 575
Csp6I	GTAC	3 cut(s)	109, 252, 604
CviAII	CATG	2 cut(s)	325, 595
CviQI	GTAC	3 cut(s)	109, 252, 604
DdeI	CTNAG	1 cut(s)	416
DinI	GGCGCC	1 cut(s)	547
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	15, 53, 552
EarI	CTCTTC	3 cut(s)	15, 53, 552
EciI	GGCGGA	2 cut(s)	286, 336
Ecl136II	GAGCTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	3 cut(s)	123, 527, 564
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	4 cut(s)	68, 99, 337, 575
Eco53kI	GAGCTC	1 cut(s)	525
Eco72I	CACGTG	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	426, 563
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	3 cut(s)	123, 527, 564
EgeI	GGCGCC	1 cut(s)	547
EheI	GGCGCC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	328, 598
FaiI	YATR	2 cut(s)	326, 596
FaqI	GGGAC	2 cut(s)	176, 477
FatI	CATG	2 cut(s)	324, 594
FauI	CCCGC	2 cut(s)	98, 465
FriOI	GRGCYC	3 cut(s)	123, 527, 564
GlaI	GCGC	1 cut(s)	547
GsaI	CCCAGC	2 cut(s)	116, 126
GsuI	CTGGAG	2 cut(s)	410, 541
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	4 cut(s)	53, 396, 494, 587
HapII	CCGG	3 cut(s)	306, 489, 495
HhaI	GCGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	2 cut(s)	328, 598
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	4 cut(s)	74, 167, 293, 433
HpaII	CCGG	3 cut(s)	306, 489, 495
HphI	GGTGA	2 cut(s)	211, 527
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	3 cut(s)	403, 411, 533
Hpy188III	TCNNGA	2 cut(s)	46, 325
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	4 cut(s)	43, 141, 457, 514
HpyCH4III	ACNGT	3 cut(s)	190, 227, 251
HpyCH4IV	ACGT	2 cut(s)	267, 602
HpyCH4V	TGCA	3 cut(s)	16, 469, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	127, 355, 358, 367, 390, 393, 466, 478
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	2 cut(s)	267, 602
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	328, 598
HspAI	GCGC	1 cut(s)	546
KasI	GGCGCC	1 cut(s)	545
KpnI	GGTACC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	2 cut(s)	53, 552
LmnI	GCTCC	6 cut(s)	242, 262, 349, 375, 506, 522
Lsp1109I	GCAGC	4 cut(s)	221, 367, 481, 538
MaeII	ACGT	2 cut(s)	267, 602
MaeIII	GTNAC	2 cut(s)	227, 515
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	7 cut(s)	32, 70, 94, 126, 442, 445, 569
MhlI	GDGCHC	4 cut(s)	123, 267, 527, 564
Mly113I	GGCGCC	1 cut(s)	546
MlyI	GAGTC	2 cut(s)	161, 287
MmeI	TCCRAC	2 cut(s)	225, 602
MspA1I	CMGCKG	3 cut(s)	105, 234, 551
MspI	CCGG	3 cut(s)	306, 489, 495
MspR9I	CCNGG	3 cut(s)	428, 490, 565
MvaI	CCWGG	2 cut(s)	428, 565
MwoI	GCNNNNNNNGC	8 cut(s)	127, 355, 358, 367, 390, 393, 466, 478
NarI	GGCGCC	1 cut(s)	546
NciI	CCSGG	1 cut(s)	490
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	328, 598
NlaIV	GGNNCC	8 cut(s)	70, 100, 110, 214, 493, 502, 547, 576
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	227, 515
NspI	RCATGY	1 cut(s)	598
PagI	TCATGA	1 cut(s)	324
PaqCI	CACCTGC	1 cut(s)	450
PasI	CCCWGGG	1 cut(s)	564
PciSI	GCTCTTC	2 cut(s)	53, 552
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	74, 433
PfoI	TCCNGGA	1 cut(s)	426
PleI	GAGTC	2 cut(s)	161, 287
PluTI	GGCGCC	1 cut(s)	549
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	2 cut(s)	161, 287
Ppu21I	YACGTR	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	426, 563
PspCI	CACGTG	1 cut(s)	268
PspFI	CCCAGC	2 cut(s)	112, 122
PspGI	CCWGG	2 cut(s)	426, 563
PspN4I	GGNNCC	8 cut(s)	70, 100, 110, 214, 493, 502, 547, 576
PspPI	GGNCC	5 cut(s)	68, 99, 337, 492, 575
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	3 cut(s)	110, 253, 605
RsaNI	GTAC	3 cut(s)	109, 252, 604
SacI	GAGCTC	1 cut(s)	527
SapI	GCTCTTC	2 cut(s)	53, 552
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	5 cut(s)	68, 99, 337, 492, 575
SchI	GAGTC	2 cut(s)	161, 287
ScrFI	CCNGG	3 cut(s)	428, 490, 565
SduI	GDGCHC	4 cut(s)	123, 267, 527, 564
SetI	ASST	9 cut(s)	128, 236, 270, 342, 422, 444, 513, 527, 605
SfcI	CTRYAG	1 cut(s)	467
SfoI	GGCGCC	1 cut(s)	547
SinI	GGWCC	4 cut(s)	68, 99, 337, 575
SspDI	GGCGCC	1 cut(s)	545
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	3 cut(s)	426, 488, 563
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	190, 227, 251
TaiI	ACGT	2 cut(s)	270, 605
TaqI	TCGA	3 cut(s)	35, 165, 507
TauI	GCSGC	6 cut(s)	352, 355, 361, 387, 396, 551
TfiI	GAWTC	2 cut(s)	74, 433
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	227, 515
TseI	GCWGC	4 cut(s)	234, 355, 469, 551
Tsp45I	GTSAC	2 cut(s)	227, 515
TspRI	CASTG	1 cut(s)	156
VpaK11BI	GGWCC	4 cut(s)	68, 99, 337, 575
XceI	RCATGY	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.