AT5G54870

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22289104 .. 22291859
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54870.1

Sequence Viewer

Length: 1596 bp
ATGGCGTCTTCATCTTCCTCATCGTCTTCTTCTTCGCTTTCATCAATTCTCTCCATCGTCGTAGTACTGATTCTAATTGTATCAACCGCTGAATCAGTGAAATCACCGTTTCATCCTCGCGATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCCGATTCTCAACTCTCTTTACGGCGCCGCCGATCTGCTTCCTACTTTCATCGGAACAGCGAGTTCTGGGAACGATTCCGTTGACTGGAAAGGTGCTTGTTTCTTTGAGAACACCGCTTGGTTAGAGTTTCATAACAAGTCTGGTAGCGAGTTTGGTGGAGGCACTCTTCACATTAAGGCGGATAAGGCACATAGTTGGACATGTATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCACGACAGCATACTGTGGAATTTCCGGAGTGGGATGGCAAAGCTGAGTATGAATATGTTAAGAACAAAGGAGTTTCTATATTCCTTATGCACGCAGGGATGTTAGGAACACTTCAAGCACTGTGGGATGTTTTTCCTCTCTTTAGCAATACTGGTTGGGGGGAGAGCTCTAATCTTGCGTTTCTTGAGAAGCATATGGGAGCTAATTTTGAACCTCGTCCTGAACCATGGGTTACAAATGTTACAACTGATCAAATCCAGTCTGGTGACCTCTTAGCTATTTCAAAGATTCGTGGGCGGTGGGGTGGTTTTGAGACTCTTGAGAAATGGGTGAGTGGGGCATATGCTGGTCATTCCGCCGTTGCCTTGAGAGACTCTGAAGGGAAACTTTGGGTTGGTGAGTCAGGAAATGAAAATGATAAGGGAGAAGATGTAATAGCAATCTTACCATGGGAGGAGTGGTGGGCATTTGAACAAACAAAGGATGACTCGAATCCTCAGATTGCACTGCTACCTTTGCATCCCGATGTTCGTGCTAAATTTGATGTTGCTGCTGCTTGGAAATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCACAACTTGATTTTTAGTTGGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTACTGGTAGAAGTAGAGAAGCGTGGATCCTCATTTGACAAATTACTGGCAGTACCTGAACTAGACGATTGGATATACAGCGATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATGTACAAAGAAGCTGGCCTATTCGGTCCACTTGCTAGTTCTATTCAAGTCACGGAATTCACGATAAAAGATGCTTACATGCTCAACTTTTTCGAGAACAACGCAAGTCGTCTTCCTACATGGTGCAATGACAATGACAGTGTGAAGCTTCCTTACTGTCAGATACTTGGGAAATACAGAATGGAACTTCCTGGTTACAACACTATGGAACCATACTCGCACATGAACGAACAATGTCCAACTCTGCCTCCAAAGTACAACAGACCAGATAACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

59.73

Weight (kDa)

4.94

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 8 cut(s) 87, 131, 183, 270, 335, 715, 774, 1064
AclWI GGATC 3 cut(s) 372, 1218, 1231
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 3 cut(s) 437, 956, 1373
AcuI CTGAAG 1 cut(s) 816
AcyI GRCGYC 2 cut(s) 5, 180
AfaI GTAC 6 cut(s) 66, 410, 1200, 1251, 1322, 1574
AfiI CCNNNNNNNGG 1 cut(s) 240
AflIII ACRYGT 2 cut(s) 356, 1140
AgsI TTSAA 6 cut(s) 533, 629, 702, 890, 1159, 1364
AjnI CCWGG 1 cut(s) 1507
AluBI AGCT 6 cut(s) 461, 585, 620, 695, 1331, 1465
AluI AGCT 6 cut(s) 461, 585, 620, 695, 1331, 1465
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 3 cut(s) 154, 725, 783
AlwI GGATC 3 cut(s) 372, 1218, 1231
AlwNI CAGNNNCTG 1 cut(s) 1253
Aor13HI TCCGGA 1 cut(s) 442
AoxI GGCC 2 cut(s) 155, 1333
ApeKI GCWGC 5 cut(s) 968, 971, 990, 1120, 1133
ApoI RAATTY 3 cut(s) 437, 956, 1373
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 1343
AsuHPI GGTGA 4 cut(s) 96, 695, 760, 827
AvaII GGWCC 1 cut(s) 1343
BamHI GGATCC 1 cut(s) 1223
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 587
BarI GAAGNNNNNNTAC 2 cut(s) 1454, 1486
BbsI GAAGAC 2 cut(s) 18, 1421
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 5 cut(s) 955, 958, 1002, 1120, 1132
BccI CCATC 4 cut(s) 62, 446, 1089, 1274
BceAI ACGGC 2 cut(s) 193, 761
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 1 cut(s) 1509
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 3 cut(s) 154, 725, 783
BfaI CTAG 3 cut(s) 1073, 1259, 1353
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 6 cut(s) 183, 969, 972, 991, 1121, 1134
BlsI GCNGC 6 cut(s) 184, 970, 973, 992, 1122, 1135
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 1509
Bme18I GGWCC 1 cut(s) 1343
BmgT120I GGNCC 1 cut(s) 1343
BmiI GGNNCC 4 cut(s) 181, 1112, 1225, 1527
BmrFI CCNGG 1 cut(s) 1509
BmrI ACTGGG 1 cut(s) 1178
BmsI GCATC 5 cut(s) 946, 1066, 1100, 1308, 1378
BmuI ACTGGG 1 cut(s) 1178
BpiI GAAGAC 2 cut(s) 18, 1421
BpuEI CTTGAG 3 cut(s) 623, 758, 805
BsaBI GATNNNNATC 1 cut(s) 1080
BsaHI GRCGYC 2 cut(s) 5, 180
BsaJI CCNNGG 2 cut(s) 644, 866
BsaWI WCCGGW 1 cut(s) 442
BsaXI ACNNNNNCTCC 6 cut(s) 834, 863, 864, 893, 1549, 1579
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 6 cut(s) 245, 574, 676, 1173, 1206, 1248
Bse3DI GCAATG 1 cut(s) 1450
Bse8I GATNNNNATC 1 cut(s) 1080
BseAI TCCGGA 1 cut(s) 442
BseBI CCWGG 1 cut(s) 1509
BseDI CCNNGG 2 cut(s) 644, 866
BseGI GGATG 6 cut(s) 112, 457, 522, 550, 907, 937
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 1450
BseMII CTCAG 3 cut(s) 453, 929, 1116
BseNI ACTGG 6 cut(s) 245, 574, 676, 1173, 1206, 1248
BseRI GAGGAG 2 cut(s) 887, 1059
BseXI GCAGC 5 cut(s) 955, 958, 1002, 1120, 1132
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 157, 1335
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 3 cut(s) 154, 725, 783
BsnI GGCC 2 cut(s) 157, 1335
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 442
Bsp1407I TGTACA 1 cut(s) 1320
Bsp143I GATC 5 cut(s) 187, 364, 667, 1186, 1223
Bsp19I CCATGG 2 cut(s) 644, 866
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 8 cut(s) 87, 131, 183, 270, 335, 715, 774, 1064
BspANI GGCC 2 cut(s) 157, 1335
BspCNI CTCAG 3 cut(s) 454, 928, 1117
BspEI TCCGGA 1 cut(s) 442
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 4 cut(s) 181, 1112, 1225, 1527
BspPI GGATC 3 cut(s) 372, 1218, 1231
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 1450
BsrGI TGTACA 1 cut(s) 1320
BsrI ACTGG 6 cut(s) 245, 574, 676, 1173, 1206, 1248
BssECI CCNNGG 2 cut(s) 644, 866
BssMI GATC 5 cut(s) 187, 364, 667, 1186, 1223
BssNI GRCGYC 2 cut(s) 5, 180
BssT1I CCWWGG 2 cut(s) 644, 866
Bst2UI CCWGG 1 cut(s) 1509
Bst4CI ACNGT 7 cut(s) 108, 433, 540, 1048, 1105, 1457, 1475
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 2 cut(s) 5, 180
BstAUI TGTACA 1 cut(s) 1320
BstC8I GCNNGC 3 cut(s) 510, 988, 1333
BstDEI CTNAG 4 cut(s) 462, 691, 915, 1125
BstDSI CCRYGG 2 cut(s) 644, 866
BstEII GGTNACC 1 cut(s) 683
BstF5I GGATG 6 cut(s) 112, 457, 522, 550, 907, 937
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 5 cut(s) 190, 367, 670, 1189, 1226
BstMAI GTCTC 3 cut(s) 154, 725, 783
BstMBI GATC 5 cut(s) 187, 364, 667, 1186, 1223
BstMWI GCNNNNNNNGC 2 cut(s) 341, 934
BstNI CCWGG 1 cut(s) 1509
BstNSI RCATGY 3 cut(s) 360, 1144, 1399
BstPI GGTNACC 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 1507
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 955, 958, 1002, 1120, 1132
BstV2I GAAGAC 2 cut(s) 18, 1421
BstX2I RGATCY 2 cut(s) 364, 1223
BstYI RGATCY 2 cut(s) 364, 1223
BsuRI GGCC 2 cut(s) 157, 1335
BtgI CCRYGG 2 cut(s) 644, 866
BtgZI GCGATG 2 cut(s) 1285, 1293
BtsCI GGATG 6 cut(s) 112, 457, 522, 550, 907, 937
BtsI GCAGTG 1 cut(s) 923
BtsIMutI CAGTG 4 cut(s) 102, 536, 923, 1462
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 510, 988, 1333
CaiI CAGNNNCTG 1 cut(s) 1253
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 1343
Csp6I GTAC 6 cut(s) 65, 409, 1199, 1250, 1321, 1573
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviQI GTAC 6 cut(s) 65, 409, 1199, 1250, 1321, 1573
DdeI CTNAG 4 cut(s) 462, 691, 915, 1125
DinI GGCGCC 1 cut(s) 181
DpnI GATC 5 cut(s) 189, 366, 669, 1188, 1225
DpnII GATC 5 cut(s) 187, 364, 667, 1186, 1223
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 2 cut(s) 350, 763
Ecl136II GAGCTC 1 cut(s) 585
Eco130I CCWWGG 2 cut(s) 644, 866
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 1343
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 816
Eco91I GGTNACC 1 cut(s) 683
EcoICRI GAGCTC 1 cut(s) 585
EcoO65I GGTNACC 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 1373
EcoRII CCWGG 1 cut(s) 1507
EcoT14I CCWWGG 2 cut(s) 644, 866
EcoT22I ATGCAT 1 cut(s) 1301
EcoT38I GRGCYC 1 cut(s) 587
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 644, 866
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FauI CCCGC 1 cut(s) 1071
FauNDI CATATG 3 cut(s) 612, 760, 1009
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 6 cut(s) 183, 969, 972, 991, 1121, 1134
FokI GGATG 6 cut(s) 99, 464, 529, 557, 914, 924
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 6 cut(s) 183, 969, 972, 991, 1121, 1134
FspBI CTAG 3 cut(s) 1073, 1259, 1353
GlaI GCGC 1 cut(s) 181
GluI GCNGC 6 cut(s) 183, 969, 972, 991, 1121, 1134
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 157, 1335
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 2 cut(s) 5, 180
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 1463
HpaII CCGG 1 cut(s) 443
HphI GGTGA 4 cut(s) 96, 695, 760, 827
Hpy166II GTNNAC 3 cut(s) 238, 1004, 1346
Hpy188I TCNGA 5 cut(s) 209, 796, 918, 1195, 1479
Hpy8I GTNNAC 3 cut(s) 238, 1004, 1346
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 791
HpyCH4III ACNGT 7 cut(s) 108, 433, 540, 1048, 1105, 1457, 1475
HpyCH4V TGCA 8 cut(s) 380, 508, 923, 937, 1091, 1120, 1299, 1443
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 934
HpyF3I CTNAG 4 cut(s) 462, 691, 915, 1125
Hsp92I GRCGYC 2 cut(s) 5, 180
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 5 cut(s) 187, 364, 667, 1186, 1223
LmnI GCTCC 2 cut(s) 617, 1110
Lsp1109I GCAGC 5 cut(s) 955, 958, 1002, 1120, 1132
LweI GCATC 5 cut(s) 946, 1066, 1100, 1308, 1378
MaeI CTAG 3 cut(s) 1073, 1259, 1353
MaeIII GTNAC 6 cut(s) 394, 649, 658, 683, 1366, 1511
MalI GATC 5 cut(s) 189, 366, 669, 1188, 1225
MboI GATC 5 cut(s) 187, 364, 667, 1186, 1223
MboII GAAGA 7 cut(s) 6, 18, 21, 24, 314, 857, 1421
MflI RGATCY 2 cut(s) 364, 1223
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 7 cut(s) 45, 75, 437, 622, 956, 1238, 1373
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 4 cut(s) 727, 785, 827, 899
MmeI TCCRAC 3 cut(s) 332, 1016, 1580
Mph1103I ATGCAT 1 cut(s) 1301
MroI TCCGGA 1 cut(s) 442
MseI TTAA 2 cut(s) 330, 477
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 1509
MvaI CCWGG 1 cut(s) 1509
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 341, 934
NarI GGCGCC 1 cut(s) 180
NcoI CCATGG 2 cut(s) 644, 866
NdeI CATATG 3 cut(s) 612, 760, 1009
NdeII GATC 5 cut(s) 187, 364, 667, 1186, 1223
NlaIV GGNNCC 4 cut(s) 181, 1112, 1225, 1527
NmuCI GTSAC 2 cut(s) 683, 1366
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 1301
NspI RCATGY 3 cut(s) 360, 1144, 1399
PagI TCATGA 1 cut(s) 1098
PciI ACATGT 2 cut(s) 356, 1140
PcsI WCGNNNNNNNCGW 2 cut(s) 183, 1376
PfeI GAWTC 6 cut(s) 70, 92, 160, 230, 706, 910
PkrI GCNGC 6 cut(s) 184, 970, 973, 992, 1122, 1135
PleI GAGTC 4 cut(s) 727, 785, 826, 899
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 4 cut(s) 727, 785, 826, 899
PscI ACATGT 2 cut(s) 356, 1140
Psp124BI GAGCTC 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 1507
PspEI GGTNACC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 1507
PspN4I GGNNCC 4 cut(s) 181, 1112, 1225, 1527
PspPI GGNCC 1 cut(s) 1343
PstNI CAGNNNCTG 1 cut(s) 1253
PsuI RGATCY 2 cut(s) 364, 1223
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 6 cut(s) 66, 410, 1200, 1251, 1322, 1574
RsaNI GTAC 6 cut(s) 65, 409, 1199, 1250, 1321, 1573
RseI CAYNNNNRTG 1 cut(s) 942
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 2 cut(s) 330, 477
SatI GCNGC 6 cut(s) 183, 969, 972, 991, 1121, 1134
Sau3AI GATC 5 cut(s) 187, 364, 667, 1186, 1223
Sau96I GGNCC 1 cut(s) 1343
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 4 cut(s) 727, 785, 827, 899
ScrFI CCNGG 1 cut(s) 1509
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 5 cut(s) 946, 1066, 1100, 1308, 1378
SfoI GGCGCC 1 cut(s) 181
SinI GGWCC 1 cut(s) 1343
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 3 cut(s) 602, 737, 784
SmoI CTYRAG 3 cut(s) 602, 737, 784
Sse9I AATT 7 cut(s) 45, 75, 437, 622, 956, 1238, 1373
SsiI CCGC 8 cut(s) 87, 131, 183, 270, 335, 715, 774, 1064
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 3 cut(s) 1073, 1259, 1353
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 1507
StyI CCWWGG 2 cut(s) 644, 866
TaaI ACNGT 7 cut(s) 108, 433, 540, 1048, 1105, 1457, 1475
TaqI TCGA 3 cut(s) 908, 1314, 1410
TaqII GACCGA 1 cut(s) 1331
TasI AATT 7 cut(s) 45, 75, 437, 622, 956, 1238, 1373
TatI WGTACW 4 cut(s) 64, 1198, 1320, 1572
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 6 cut(s) 70, 92, 160, 230, 706, 910
Tru1I TTAA 2 cut(s) 330, 477
Tru9I TTAA 2 cut(s) 330, 477
TscAI CASTG 4 cut(s) 102, 543, 930, 1462
TseFI GTSAC 2 cut(s) 683, 1366
TseI GCWGC 5 cut(s) 968, 971, 990, 1120, 1133
Tsp45I GTSAC 2 cut(s) 683, 1366
TspGWI ACGGA 2 cut(s) 223, 1385
TspRI CASTG 4 cut(s) 102, 543, 930, 1462
VpaK11BI GGWCC 1 cut(s) 1343
XapI RAATTY 3 cut(s) 437, 956, 1373
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 3 cut(s) 360, 1144, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XspI CTAG 3 cut(s) 1073, 1259, 1353
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.