MD11G1221100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
32402552 .. 32406705
4154 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1221100.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGGCTTCCTCTCCCTCTCTACTGTTCGCAGCCGCTGTAACCACCCTTACTTTTCTCTCCGTGCACTCCGTCAAATTACCATTTCACCCCCGCGACGTCCTTCCTCTCTTGCCCAGACAGATTTCATGGCCAATCCTCAACTCTCTGCACGGCGCGGTCGATCTCCTGCCCACCTTCGTCGGCTCGGCGTCGTCTCCGAACGACAGTTTCGAGTGGAAAGGCGCGTGTTTTTACCAGAACACAGCTTGGATGGAGTTCCACAACAAGACTGGCAGCGAATTTGGCGGCGGAACTCTTCATCTCAAGGTTAGTAAGCCTCACAGTTGGACGTGTATGGATATTTACGTCTTTGCAACTCCATACACTGTCACATGGGATTACTATTTACTGTCTCGGGAGCATACACTTGAGTTTAAAGAGTGGCAAGGAAAAGATGAGTTTGAATATGTGAAAAACAGGGGAGTTTCTATTTTCCTTATGCAAGCAGGGATGTTAGGCACCCTTCAAGCGTTGTGGGATGTCTTCCCCTTGTTTACGAATACCGGATGGGGTGAGAACTCTAATATTGGGTTTCTTGAGAAGCACATGGGTGCTTCCTTTGATCAGCGTCCTCAACCTTGGGTAACAAATATTAGCGTTGATGATATTCACTCTGGAGATTTCCTAGCAATATCTAAGATTCGTGGACGGTGGGGTGGATTTGAGACTCTAGAAAAGTGGGTGAGTGGAGCTTATGCTGGTCATTCTGCTGTTTGTTTAAAGGATTCTGAAGGAAAGCTATGGGTTGGTGAATCAGGACACGAAAATGAGAAGGGGGAAGATATTATTGCTGTGCTTCCATGGGATGAATGGTGGGAATTTGAGCTAAATAAAGATGATTCCAATCCCCATATTGCATTGCTTCCCTTGCATCCTGATATACGAGCTAAGTTCAATGAGACTGCTGCCTGGGAGTATGCAAGGAGCATGGAAGGTCAACCTTATGGTTTTCATAACTTGATATTCAGCTGGATAGATACTATAGAAGACAACTATCCACCCCCTTTGGATGCTCACGTGGTTGCATCTGTTATGACTGTTTGGAATCAAATACAGCCTGCATATGCTGCGAACATGTGGAACGAAGCCTTGAACAAGAGACTTGGAACACAGAACCTTACTTTTCCGGATATTCTAGTTGAAGTTGAAAAGAGAGGATCATCTTTTGACCAACTGCTGACAATTCCCGAACAGGATGATTGGGAATACAGTGATGGGAAGTCAACATCGTGTGTGGCCTTCATTCTTGAAATGTATAAGGAGGCAGGACTGTTTGGTCCAATTGCAAGCTCTATACAGGTCACTGAATTTACGATAAAAGATGCTTACATGCTCAAGTTCTTTGAAAATAATTCAAGCCGCCTGCCAAAGTGGTGCAATGATGGTGACACCGTGAAGCTTCCTTTCTGTCAAATTAAAGGGAAGTATCGAATGGAATTACCCTTATACAACACCATGGAAACGTACCCCCATATGAACGAAAGGTGCCCATCACTGCCCCCCAAGTACTCCCGGTTGCAGAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

59.5

Weight (kDa)

5.15

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1314
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 497, 1524
AccII CGCG 3 cut(s) 93, 155, 224
AccIII TCCGGA 1 cut(s) 1165
AciI CCGC 6 cut(s) 33, 91, 155, 285, 288, 1399
AclWI GGATC 1 cut(s) 1204
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 3 cut(s) 278, 857, 1346
AcuI CTGAAG 1 cut(s) 789
AcvI CACGTG 1 cut(s) 1057
AcyI GRCGYC 2 cut(s) 96, 188
AfaI GTAC 2 cut(s) 1505, 1547
AflIII ACRYGT 2 cut(s) 329, 1113
AgsI TTSAA 9 cut(s) 443, 506, 934, 1132, 1181, 1187, 1289, 1385, 1395
AjiI CACGTC 1 cut(s) 330
AjnI CCWGG 1 cut(s) 947
AleI CACNNNNGTG 1 cut(s) 588
AluBI AGCT 8 cut(s) 245, 731, 778, 865, 926, 1008, 1329, 1438
AluI AGCT 8 cut(s) 245, 731, 778, 865, 926, 1008, 1329, 1438
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 5 cut(s) 198, 396, 698, 932, 1132
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 1204
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 1165
AoxI GGCC 2 cut(s) 128, 1275
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 4 cut(s) 29, 273, 944, 1106
ApoI RAATTY 3 cut(s) 278, 857, 1346
AspLEI GCGC 2 cut(s) 155, 224
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 1552
AsuHPI GGTGA 5 cut(s) 77, 563, 733, 800, 1436
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 1 cut(s) 1316
BaeGI GKGCMC 2 cut(s) 66, 1529
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 2 cut(s) 497, 1524
BbrPI CACGTG 1 cut(s) 1057
BbsI GAAGAC 2 cut(s) 514, 1032
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 4 cut(s) 41, 285, 931, 1093
BccI CCATC 5 cut(s) 244, 540, 1247, 1415, 1537
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 949
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 1 cut(s) 1552
BcoDI GTCTC 5 cut(s) 198, 396, 698, 932, 1132
BfaI CTAG 3 cut(s) 665, 710, 1175
BfmI CTRYAG 1 cut(s) 1020
BisI GCNGC 7 cut(s) 30, 33, 274, 286, 945, 1107, 1399
BlsI GCNGC 7 cut(s) 31, 34, 275, 287, 946, 1108, 1400
BmcAI AGTACT 1 cut(s) 1547
Bme1390I CCNGG 2 cut(s) 949, 1552
Bme18I GGWCC 1 cut(s) 1316
BmeT110I CYCGRG 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 330
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 2 cut(s) 499, 1526
BmrFI CCNGG 2 cut(s) 949, 1552
BmsI GCATC 4 cut(s) 919, 1039, 1073, 1351
BpiI GAAGAC 2 cut(s) 514, 1032
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 4 cut(s) 287, 428, 596, 1358
BpuMI CCSGG 1 cut(s) 1552
BsaAI YACGTR 1 cut(s) 1057
BsaBI GATNNNNATC 1 cut(s) 882
BsaHI GRCGYC 2 cut(s) 96, 188
BsaJI CCNNGG 4 cut(s) 617, 839, 948, 1494
BsaWI WCCGGW 2 cut(s) 542, 1165
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 2 cut(s) 896, 1423
Bse8I GATNNNNATC 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 1165
BseBI CCWGG 1 cut(s) 949
BseDI CCNNGG 4 cut(s) 617, 839, 948, 1494
BseGI GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BseJI GATNNNNATC 1 cut(s) 882
BseMI GCAATG 2 cut(s) 896, 1423
BseNI ACTGG 1 cut(s) 274
BseSI GKGCMC 2 cut(s) 66, 1529
BseXI GCAGC 4 cut(s) 41, 285, 931, 1093
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 3 cut(s) 93, 155, 224
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 130, 1277
BshNI GGYRCC 2 cut(s) 497, 1524
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 393
BsiSI CCGG 3 cut(s) 543, 1166, 1552
BsmAI GTCTC 5 cut(s) 198, 396, 698, 932, 1132
BsmBI CGTCTC 1 cut(s) 198
BsnI GGCC 2 cut(s) 130, 1277
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 66, 1529
Bsp13I TCCGGA 1 cut(s) 1165
Bsp143I GATC 3 cut(s) 160, 601, 1196
Bsp19I CCATGG 2 cut(s) 839, 1494
BspACI CCGC 6 cut(s) 33, 91, 155, 285, 288, 1399
BspANI GGCC 2 cut(s) 130, 1277
BspEI TCCGGA 1 cut(s) 1165
BspFNI CGCG 3 cut(s) 93, 155, 224
BspLI GGNNCC 2 cut(s) 499, 1526
BspPI GGATC 1 cut(s) 1204
BspT107I GGYRCC 2 cut(s) 497, 1524
BsrDI GCAATG 2 cut(s) 896, 1423
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 4 cut(s) 617, 839, 948, 1494
BssMI GATC 3 cut(s) 160, 601, 1196
BssNI GRCGYC 2 cut(s) 96, 188
BssT1I CCWWGG 3 cut(s) 617, 839, 1494
Bst2UI CCWGG 1 cut(s) 949
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 2 cut(s) 96, 188
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstBAI YACGTR 1 cut(s) 1057
BstC8I GCNNGC 4 cut(s) 483, 1098, 1327, 1403
BstDEI CTNAG 2 cut(s) 675, 927
BstDSI CCRYGG 2 cut(s) 839, 1494
BstF5I GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BstFNI CGCG 3 cut(s) 93, 155, 224
BstHHI GCGC 2 cut(s) 155, 224
BstKTI GATC 3 cut(s) 163, 604, 1199
BstMAI GTCTC 5 cut(s) 198, 396, 698, 932, 1132
BstMBI GATC 3 cut(s) 160, 601, 1196
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 282, 907, 1106
BstNI CCWGG 1 cut(s) 949
BstNSI RCATGY 2 cut(s) 1117, 1372
BstSCI CCNGG 2 cut(s) 947, 1550
BstSFI CTRYAG 1 cut(s) 1020
BstSLI GKGCMC 2 cut(s) 66, 1529
BstUI CGCG 3 cut(s) 93, 155, 224
BstV1I GCAGC 4 cut(s) 41, 285, 931, 1093
BstV2I GAAGAC 2 cut(s) 514, 1032
BsuRI GGCC 2 cut(s) 130, 1277
BtgI CCRYGG 2 cut(s) 839, 1494
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BtsI GCAGTG 1 cut(s) 1532
BtsIMutI CAGTG 4 cut(s) 363, 1255, 1341, 1532
Cac8I GCNNGC 4 cut(s) 483, 1098, 1327, 1403
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 2 cut(s) 155, 224
Cfr13I GGNCC 1 cut(s) 1316
CseI GACGC 2 cut(s) 177, 596
Csp6I GTAC 2 cut(s) 1504, 1546
CspCI CAANNNNNGTGG 4 cut(s) 494, 529, 1026, 1061
CviAII CATG 8 cut(s) 126, 372, 586, 840, 967, 1114, 1369, 1495
CviQI GTAC 2 cut(s) 1504, 1546
DdeI CTNAG 2 cut(s) 675, 927
DpnI GATC 3 cut(s) 162, 603, 1198
DpnII GATC 3 cut(s) 160, 601, 1196
DraI TTTAAA 2 cut(s) 415, 759
DrdI GACNNNNNNGTC 1 cut(s) 1314
DseDI GACNNNNNNGTC 1 cut(s) 1314
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 617, 839, 1494
Eco47I GGWCC 1 cut(s) 1316
Eco57I CTGAAG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 1057
Eco88I CYCGRG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 947
EcoT14I CCWWGG 3 cut(s) 617, 839, 1494
ErhI CCWWGG 3 cut(s) 617, 839, 1494
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 8 cut(s) 129, 375, 589, 843, 970, 1117, 1372, 1498
FatI CATG 8 cut(s) 125, 371, 585, 839, 966, 1113, 1368, 1494
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 2 cut(s) 1102, 1512
FbaI TGATCA 1 cut(s) 601
Fnu4HI GCNGC 7 cut(s) 30, 33, 274, 286, 945, 1107, 1399
FokI GGATG 8 cut(s) 262, 502, 530, 558, 857, 897, 1061, 1247
Fsp4HI GCNGC 7 cut(s) 30, 33, 274, 286, 945, 1107, 1399
FspBI CTAG 3 cut(s) 665, 710, 1175
GlaI GCGC 2 cut(s) 154, 223
GluI GCNGC 7 cut(s) 30, 33, 274, 286, 945, 1107, 1399
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 2 cut(s) 130, 1277
HapII CCGG 3 cut(s) 543, 1166, 1552
HgaI GACGC 2 cut(s) 177, 596
HhaI GCGC 2 cut(s) 155, 224
Hin1I GRCGYC 2 cut(s) 96, 188
Hin1II CATG 8 cut(s) 129, 375, 589, 843, 970, 1117, 1372, 1498
Hin6I GCGC 2 cut(s) 153, 222
HinP1I GCGC 2 cut(s) 153, 222
HincII GTYRAC 2 cut(s) 977, 1263
HindII GTYRAC 2 cut(s) 977, 1263
HindIII AAGCTT 1 cut(s) 1436
HinfI GANTC 6 cut(s) 679, 706, 764, 791, 878, 1084
HpaII CCGG 3 cut(s) 543, 1166, 1552
HphI GGTGA 5 cut(s) 77, 563, 733, 800, 1436
Hpy166II GTNNAC 5 cut(s) 64, 534, 686, 977, 1263
Hpy188I TCNGA 2 cut(s) 198, 769
Hpy188III TCNNGA 9 cut(s) 395, 575, 654, 710, 795, 914, 1166, 1226, 1286
Hpy8I GTNNAC 5 cut(s) 64, 534, 686, 977, 1263
Hpy99I CGWCG 3 cut(s) 98, 182, 193
HpyAV CCTTC 7 cut(s) 110, 184, 512, 764, 805, 965, 1288
HpyCH4IV ACGT 5 cut(s) 96, 329, 345, 1056, 1502
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 907, 1106
HpyF3I CTNAG 2 cut(s) 675, 927
HpySE526I ACGT 5 cut(s) 96, 329, 345, 1056, 1502
Hsp92I GRCGYC 2 cut(s) 96, 188
Hsp92II CATG 8 cut(s) 129, 375, 589, 843, 970, 1117, 1372, 1498
HspAI GCGC 2 cut(s) 153, 222
Kpn2I TCCGGA 1 cut(s) 1165
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 3 cut(s) 160, 601, 1196
LmnI GCTCC 3 cut(s) 397, 728, 963
Lsp1109I GCAGC 4 cut(s) 41, 285, 931, 1093
LweI GCATC 4 cut(s) 919, 1039, 1073, 1351
MaeI CTAG 3 cut(s) 665, 710, 1175
MaeII ACGT 5 cut(s) 96, 329, 345, 1056, 1502
MaeIII GTNAC 5 cut(s) 37, 367, 622, 1339, 1424
MalI GATC 3 cut(s) 162, 603, 1198
MboI GATC 3 cut(s) 160, 601, 1196
MboII GAAGA 4 cut(s) 287, 514, 830, 1037
MfeI CAATTG 1 cut(s) 1320
MhlI GDGCHC 2 cut(s) 66, 1529
MlsI TGGCCA 1 cut(s) 130
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 8 cut(s) 19, 25, 114, 146, 327, 621, 1187, 1294
Mox20I TGGCCA 1 cut(s) 130
MroI TCCGGA 1 cut(s) 1165
MscI TGGCCA 1 cut(s) 130
MseI TTAA 3 cut(s) 414, 758, 1455
MslI CAYNNNNRTG 2 cut(s) 588, 804
Msp20I TGGCCA 1 cut(s) 130
MspA1I CMGCKG 2 cut(s) 35, 1008
MspI CCGG 3 cut(s) 543, 1166, 1552
MspR9I CCNGG 2 cut(s) 949, 1552
MunI CAATTG 1 cut(s) 1320
MvaI CCWGG 1 cut(s) 949
MvnI CGCG 3 cut(s) 93, 155, 224
MwoI GCNNNNNNNGC 3 cut(s) 282, 907, 1106
NciI CCSGG 1 cut(s) 1552
NcoI CCATGG 2 cut(s) 839, 1494
NdeI CATATG 2 cut(s) 1102, 1512
NdeII GATC 3 cut(s) 160, 601, 1196
NlaIII CATG 8 cut(s) 129, 375, 589, 843, 970, 1117, 1372, 1498
NlaIV GGNNCC 2 cut(s) 499, 1526
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 3 cut(s) 367, 1339, 1424
NspI RCATGY 2 cut(s) 1117, 1372
OliI CACNNNNGTG 1 cut(s) 588
PciI ACATGT 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 207
PfeI GAWTC 5 cut(s) 679, 764, 791, 878, 1084
PkrI GCNGC 7 cut(s) 31, 34, 275, 287, 946, 1108, 1400
PleI GAGTC 1 cut(s) 700
PmaCI CACGTG 1 cut(s) 1057
PmlI CACGTG 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 1057
PscI ACATGT 1 cut(s) 1113
Psp6I CCWGG 1 cut(s) 947
PspCI CACGTG 1 cut(s) 1057
PspGI CCWGG 1 cut(s) 947
PspN4I GGNNCC 2 cut(s) 499, 1526
PspPI GGNCC 1 cut(s) 1316
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 1008
RsaI GTAC 2 cut(s) 1505, 1547
RsaNI GTAC 2 cut(s) 1504, 1546
RseI CAYNNNNRTG 2 cut(s) 588, 804
SaqAI TTAA 3 cut(s) 414, 758, 1455
SatI GCNGC 7 cut(s) 30, 33, 274, 286, 945, 1107, 1399
Sau3AI GATC 3 cut(s) 160, 601, 1196
Sau96I GGNCC 1 cut(s) 1316
ScaI AGTACT 1 cut(s) 1547
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 949, 1552
SduI GDGCHC 2 cut(s) 66, 1529
SfaNI GCATC 4 cut(s) 919, 1039, 1073, 1351
SfcI CTRYAG 1 cut(s) 1020
SinI GGWCC 1 cut(s) 1316
SmiMI CAYNNNNRTG 2 cut(s) 588, 804
SmlI CTYRAG 4 cut(s) 302, 407, 575, 1373
SmoI CTYRAG 4 cut(s) 302, 407, 575, 1373
SsiI CCGC 6 cut(s) 33, 91, 155, 285, 288, 1399
SspI AATATT 2 cut(s) 565, 631
SspMI CTAG 3 cut(s) 665, 710, 1175
StyD4I CCNGG 2 cut(s) 947, 1550
StyI CCWWGG 3 cut(s) 617, 839, 1494
TaiI ACGT 5 cut(s) 99, 332, 348, 1059, 1505
TaqI TCGA 3 cut(s) 159, 210, 1468
TatI WGTACW 1 cut(s) 1545
TauI GCSGC 3 cut(s) 35, 288, 1401
TfiI GAWTC 5 cut(s) 679, 764, 791, 878, 1084
Tru1I TTAA 3 cut(s) 414, 758, 1455
Tru9I TTAA 3 cut(s) 414, 758, 1455
TscAI CASTG 4 cut(s) 370, 1255, 1348, 1539
TseFI GTSAC 3 cut(s) 367, 1339, 1424
TseI GCWGC 4 cut(s) 29, 273, 944, 1106
Tsp45I GTSAC 3 cut(s) 367, 1339, 1424
TspDTI ATGAA 6 cut(s) 114, 287, 861, 980, 1270, 1529
TspGWI ACGGA 2 cut(s) 49, 58
TspRI CASTG 4 cut(s) 370, 1255, 1348, 1539
VneI GTGCAC 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 1316
XapI RAATTY 3 cut(s) 278, 857, 1346
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 2 cut(s) 1117, 1372
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 846
XspI CTAG 3 cut(s) 665, 710, 1175
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 1547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.