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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27020 AT5G54870 AT5G54870 |
| fragaria_vesca | FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 |
| malus_domestica | MD03G1205200.v1.1 MD11G1221100.v1.1 |
| prunus_persica | Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210800_v2.0.a1 |
| pyrus_communis | pycom03g15510 pycom11g19510 |
| rosa_chinensis | RchiOBHm_Chr5g0039091 |
| rosa_laevigata | RLG00000033892 |
| rosa_multiflora | Rmu_sc0000533.1_g000029 Rmu_ssc0000410.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00042030 |
| rosa_rugosa | Rorug05G0176400 |
| rosa_samantha | Rh5AG262800 Rh5BG267600 Rh5CG300300 Rh5DG274100 |
| rosa_wichuraiana | Rw5G024570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2640 |
| AccB1I | GGYRCC | 2 cut(s) | 373, 1297 |
| AccI | GTMKAC | 2 cut(s) | 1966, 2415 |
| AccII | CGCG | 2 cut(s) | 213, 1329 |
| AciI | CCGC | 7 cut(s) | 150, 211, 213, 728, 905, 1664, 2239 |
| AclWI | GGATC | 8 cut(s) | 719, 877, 1258, 1446, 1500, 1790, 1803, 2637 |
| AcsI | RAATTY | 7 cut(s) | 114, 127, 925, 944, 1414, 1937, 2007 |
| AcuI | CTGAAG | 3 cut(s) | 851, 1235, 1257 |
| AfaI | GTAC | 4 cut(s) | 1973, 2077, 2217, 2747 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 217, 1595 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 2488 |
| AjnI | CCWGG | 4 cut(s) | 813, 1300, 1588, 2362 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2134, 2166 |
| Alw21I | GWGCWC | 2 cut(s) | 514, 2022 |
| Alw26I | GTCTC | 1 cut(s) | 998 |
| Alw44I | GTGCAC | 1 cut(s) | 2018 |
| AlwI | GGATC | 8 cut(s) | 719, 877, 1258, 1446, 1500, 1790, 1803, 2637 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2387 |
| Ama87I | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| AoxI | GGCC | 3 cut(s) | 167, 637, 1916 |
| ApaLI | GTGCAC | 1 cut(s) | 2018 |
| ApeKI | GCWGC | 8 cut(s) | 152, 446, 730, 733, 1109, 1694, 2123, 2236 |
| ApoI | RAATTY | 7 cut(s) | 114, 127, 925, 944, 1414, 1937, 2007 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1922, 1954 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 864, 1164, 1941 |
| AspLEI | GCGC | 2 cut(s) | 2027, 2483 |
| AspS9I | GGNCC | 9 cut(s) | 4, 167, 231, 363, 665, 1583, 2677, 2875, 2939 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 8 cut(s) | 49, 199, 254, 262, 295, 839, 1493, 2513 |
| AsuII | TTCGAA | 1 cut(s) | 2059 |
| AvaI | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| AvaII | GGWCC | 8 cut(s) | 4, 231, 363, 665, 1583, 2677, 2875, 2939 |
| AxyI | CCTNAGG | 1 cut(s) | 738 |
| BaeGI | GKGCMC | 1 cut(s) | 2022 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2367, 2400 |
| BamHI | GGATCC | 1 cut(s) | 1795 |
| BanI | GGYRCC | 2 cut(s) | 373, 1297 |
| BanII | GRGCYC | 1 cut(s) | 514 |
| BbsI | GAAGAC | 7 cut(s) | 629, 816, 965, 1134, 2062, 2175, 2253 |
| Bbv12I | GWGCWC | 2 cut(s) | 514, 2022 |
| BbvI | GCAGC | 8 cut(s) | 139, 458, 720, 742, 1096, 1681, 2135, 2248 |
| BceAI | ACGGC | 1 cut(s) | 458 |
| BciT130I | CCWGG | 4 cut(s) | 815, 1302, 1590, 2364 |
| BciVI | GTATCC | 1 cut(s) | 835 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 998 |
| BfaI | CTAG | 2 cut(s) | 1196, 1800 |
| BfmI | CTRYAG | 1 cut(s) | 2379 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BfuI | GTATCC | 1 cut(s) | 835 |
| Bme1390I | CCNGG | 5 cut(s) | 121, 815, 1302, 1590, 2364 |
| Bme18I | GGWCC | 8 cut(s) | 4, 231, 363, 665, 1583, 2677, 2875, 2939 |
| BmeT110I | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| BmgT120I | GGNCC | 9 cut(s) | 4, 167, 231, 363, 665, 1583, 2677, 2875, 2939 |
| BmiI | GGNNCC | 5 cut(s) | 375, 432, 1299, 1797, 2679 |
| BmrFI | CCNGG | 5 cut(s) | 121, 815, 1302, 1590, 2364 |
| BmrI | ACTGGG | 1 cut(s) | 273 |
| BmsI | GCATC | 5 cut(s) | 700, 1329, 1756, 1978, 2439 |
| BmuI | ACTGGG | 1 cut(s) | 273 |
| BpiI | GAAGAC | 7 cut(s) | 629, 816, 965, 1134, 2062, 2175, 2253 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 181, 213, 1205, 1237, 1720, 1752 |
| BpmI | CTGGAG | 2 cut(s) | 1251, 2868 |
| Bpu10I | CCTNAGC | 1 cut(s) | 573 |
| Bpu14I | TTCGAA | 1 cut(s) | 2059 |
| BpuEI | CTTGAG | 3 cut(s) | 1207, 2222, 2569 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| BsaBI | GATNNNNATC | 2 cut(s) | 723, 1898 |
| BsaJI | CCNNGG | 6 cut(s) | 211, 474, 814, 1301, 1461, 2419 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1224, 1254, 1470, 1500 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 217, 1595 |
| Bse1I | ACTGG | 7 cut(s) | 268, 850, 1600, 1864, 2342, 2851, 2885 |
| Bse21I | CCTNAGG | 1 cut(s) | 738 |
| Bse8I | GATNNNNATC | 2 cut(s) | 723, 1898 |
| BseBI | CCWGG | 4 cut(s) | 815, 1302, 1590, 2364 |
| BseDI | CCNNGG | 6 cut(s) | 211, 474, 814, 1301, 1461, 2419 |
| BseGI | GGATG | 6 cut(s) | 715, 724, 988, 1762, 2185, 2941 |
| BseJI | GATNNNNATC | 2 cut(s) | 723, 1898 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 217, 1595 |
| BseMII | CTCAG | 8 cut(s) | 369, 564, 752, 1092, 1894, 2217, 2709, 2808 |
| BseNI | ACTGG | 7 cut(s) | 268, 850, 1600, 1864, 2342, 2851, 2885 |
| BseSI | GKGCMC | 1 cut(s) | 2022 |
| BseXI | GCAGC | 8 cut(s) | 139, 458, 720, 742, 1096, 1681, 2135, 2248 |
| BseYI | CCCAGC | 1 cut(s) | 317 |
| BsgI | GTGCAG | 2 cut(s) | 2976, 2984 |
| Bsh1236I | CGCG | 2 cut(s) | 213, 1329 |
| BshFI | GGCC | 3 cut(s) | 169, 639, 1918 |
| BshNI | GGYRCC | 2 cut(s) | 373, 1297 |
| BsiHKAI | GWGCWC | 2 cut(s) | 514, 2022 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| BsiSI | CCGG | 1 cut(s) | 121 |
| BsiWI | CGTACG | 1 cut(s) | 2075 |
| BslFI | GGGAC | 2 cut(s) | 355, 1041 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 217, 1595 |
| BsmAI | GTCTC | 1 cut(s) | 998 |
| BsmFI | GGGAC | 2 cut(s) | 355, 1041 |
| BsnI | GGCC | 3 cut(s) | 169, 639, 1918 |
| BsoBI | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| Bsp119I | TTCGAA | 1 cut(s) | 2059 |
| Bsp1286I | GDGCHC | 2 cut(s) | 514, 2022 |
| Bsp1407I | TGTACA | 1 cut(s) | 1971 |
| BspACI | CCGC | 7 cut(s) | 150, 211, 213, 728, 905, 1664, 2239 |
| BspANI | GGCC | 3 cut(s) | 169, 639, 1918 |
| BspCNI | CTCAG | 8 cut(s) | 370, 565, 751, 1093, 1893, 2218, 2710, 2809 |
| BspFNI | CGCG | 2 cut(s) | 213, 1329 |
| BspHI | TCATGA | 1 cut(s) | 2290 |
| BspLI | GGNNCC | 5 cut(s) | 375, 432, 1299, 1797, 2679 |
| BspMAI | CTGCAG | 1 cut(s) | 2383 |
| BspPI | GGATC | 8 cut(s) | 719, 877, 1258, 1446, 1500, 1790, 1803, 2637 |
| BspQI | GCTCTTC | 2 cut(s) | 1801, 2226 |
| BspT104I | TTCGAA | 1 cut(s) | 2059 |
| BspT107I | GGYRCC | 2 cut(s) | 373, 1297 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BsrGI | TGTACA | 1 cut(s) | 1971 |
| BsrI | ACTGG | 7 cut(s) | 268, 850, 1600, 1864, 2342, 2851, 2885 |
| BssECI | CCNNGG | 6 cut(s) | 211, 474, 814, 1301, 1461, 2419 |
| BssT1I | CCWWGG | 2 cut(s) | 1461, 2419 |
| Bst2UI | CCWGG | 4 cut(s) | 815, 1302, 1590, 2364 |
| Bst4CI | ACNGT | 8 cut(s) | 357, 767, 971, 1964, 1971, 2080, 2642, 2943 |
| Bst6I | CTCTTC | 6 cut(s) | 89, 602, 1801, 2226, 2518, 2925 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2002 |
| BstAUI | TGTACA | 1 cut(s) | 1971 |
| BstBI | TTCGAA | 1 cut(s) | 2059 |
| BstC8I | GCNNGC | 4 cut(s) | 315, 1785, 2283, 2343 |
| BstDEI | CTNAG | 9 cut(s) | 378, 573, 738, 1101, 1359, 1880, 2226, 2718, 2817 |
| BstDSI | CCRYGG | 2 cut(s) | 211, 474 |
| BstF5I | GGATG | 6 cut(s) | 715, 724, 988, 1762, 2185, 2941 |
| BstFNI | CGCG | 2 cut(s) | 213, 1329 |
| BstHHI | GCGC | 2 cut(s) | 2027, 2483 |
| BstMAI | GTCTC | 1 cut(s) | 998 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 509, 1661, 1829, 1869, 2002 |
| BstNI | CCWGG | 4 cut(s) | 815, 1302, 1590, 2364 |
| BstNSI | RCATGY | 2 cut(s) | 1787, 2345 |
| BstSCI | CCNGG | 5 cut(s) | 119, 813, 1300, 1588, 2362 |
| BstSFI | CTRYAG | 1 cut(s) | 2379 |
| BstSLI | GKGCMC | 1 cut(s) | 2022 |
| BstUI | CGCG | 2 cut(s) | 213, 1329 |
| BstV1I | GCAGC | 8 cut(s) | 139, 458, 720, 742, 1096, 1681, 2135, 2248 |
| BstV2I | GAAGAC | 7 cut(s) | 629, 816, 965, 1134, 2062, 2175, 2253 |
| BstX2I | RGATCY | 5 cut(s) | 882, 1263, 1451, 1492, 1795 |
| BstYI | RGATCY | 5 cut(s) | 882, 1263, 1451, 1492, 1795 |
| Bsu36I | CCTNAGG | 1 cut(s) | 738 |
| BsuI | GTATCC | 1 cut(s) | 835 |
| BsuRI | GGCC | 3 cut(s) | 169, 639, 1918 |
| BtgI | CCRYGG | 2 cut(s) | 211, 474 |
| BtgZI | GCGATG | 1 cut(s) | 2786 |
| BtsCI | GGATG | 6 cut(s) | 715, 724, 988, 1762, 2185, 2941 |
| BtsI | GCAGTG | 2 cut(s) | 570, 2996 |
| BtsIMutI | CAGTG | 5 cut(s) | 404, 570, 772, 2142, 2996 |
| Cac8I | GCNNGC | 4 cut(s) | 315, 1785, 2283, 2343 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2387 |
| CciI | TCATGA | 1 cut(s) | 2290 |
| CfoI | GCGC | 2 cut(s) | 2027, 2483 |
| Cfr13I | GGNCC | 9 cut(s) | 4, 167, 231, 363, 665, 1583, 2677, 2875, 2939 |
| Cfr42I | CCGCGG | 1 cut(s) | 214 |
| Csp6I | GTAC | 4 cut(s) | 1972, 2076, 2216, 2746 |
| CviQI | GTAC | 4 cut(s) | 1972, 2076, 2216, 2746 |
| DdeI | CTNAG | 9 cut(s) | 378, 573, 738, 1101, 1359, 1880, 2226, 2718, 2817 |
| DraI | TTTAAA | 1 cut(s) | 2014 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2640 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2640 |
| Eam1104I | CTCTTC | 6 cut(s) | 89, 602, 1801, 2226, 2518, 2925 |
| EarI | CTCTTC | 6 cut(s) | 89, 602, 1801, 2226, 2518, 2925 |
| Ecl136II | GAGCTC | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 2 cut(s) | 1461, 2419 |
| Eco147I | AGGCCT | 1 cut(s) | 639 |
| Eco24I | GRGCYC | 1 cut(s) | 514 |
| Eco32I | GATATC | 3 cut(s) | 418, 1189, 2969 |
| Eco47I | GGWCC | 8 cut(s) | 4, 231, 363, 665, 1583, 2677, 2875, 2939 |
| Eco53kI | GAGCTC | 1 cut(s) | 512 |
| Eco57I | CTGAAG | 3 cut(s) | 851, 1235, 1257 |
| Eco81I | CCTNAGG | 1 cut(s) | 738 |
| Eco88I | CYCGRG | 3 cut(s) | 2400, 2556, 2730 |
| EcoICRI | GAGCTC | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 3 cut(s) | 665, 2677, 2875 |
| EcoRII | CCWGG | 4 cut(s) | 813, 1300, 1588, 2362 |
| EcoRV | GATATC | 3 cut(s) | 418, 1189, 2969 |
| EcoT14I | CCWWGG | 2 cut(s) | 1461, 2419 |
| EcoT22I | ATGCAT | 2 cut(s) | 715, 2347 |
| EcoT38I | GRGCYC | 1 cut(s) | 514 |
| ErhI | CCWWGG | 2 cut(s) | 1461, 2419 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1230, 1262, 2245, 2277 |
| FaqI | GGGAC | 2 cut(s) | 355, 1041 |
| FblI | GTMKAC | 2 cut(s) | 1966, 2415 |
| FokI | GGATG | 6 cut(s) | 722, 731, 995, 1769, 2192, 2948 |
| FriOI | GRGCYC | 1 cut(s) | 514 |
| FspBI | CTAG | 2 cut(s) | 1196, 1800 |
| GlaI | GCGC | 2 cut(s) | 2026, 2482 |
| GsaI | CCCAGC | 1 cut(s) | 321 |
| GsuI | CTGGAG | 2 cut(s) | 1251, 2868 |
| HaeIII | GGCC | 3 cut(s) | 169, 639, 1918 |
| HapII | CCGG | 1 cut(s) | 121 |
| HhaI | GCGC | 2 cut(s) | 2027, 2483 |
| Hin6I | GCGC | 2 cut(s) | 2025, 2481 |
| HinP1I | GCGC | 2 cut(s) | 2025, 2481 |
| HincII | GTYRAC | 3 cut(s) | 543, 1967, 2739 |
| HindII | GTYRAC | 3 cut(s) | 543, 1967, 2739 |
| HindIII | AAGCTT | 2 cut(s) | 599, 1088 |
| HinfI | GANTC | 9 cut(s) | 190, 245, 394, 568, 917, 1331, 2107, 2689, 2704 |
| HpaII | CCGG | 1 cut(s) | 121 |
| HphI | GGTGA | 8 cut(s) | 49, 199, 254, 262, 295, 839, 1493, 2513 |
| Hpy166II | GTNNAC | 7 cut(s) | 543, 1671, 1967, 2020, 2216, 2416, 2739 |
| Hpy8I | GTNNAC | 7 cut(s) | 543, 1671, 1967, 2020, 2216, 2416, 2739 |
| Hpy99I | CGWCG | 2 cut(s) | 531, 1968 |
| HpyCH4III | ACNGT | 8 cut(s) | 357, 767, 971, 1964, 1971, 2080, 2642, 2943 |
| HpyCH4IV | ACGT | 3 cut(s) | 1954, 2149, 2488 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 509, 1661, 1829, 1869, 2002 |
| HpyF3I | CTNAG | 9 cut(s) | 378, 573, 738, 1101, 1359, 1880, 2226, 2718, 2817 |
| HpySE526I | ACGT | 3 cut(s) | 1954, 2149, 2488 |
| HspAI | GCGC | 2 cut(s) | 2025, 2481 |
| KspI | CCGCGG | 1 cut(s) | 214 |
| LguI | GCTCTTC | 2 cut(s) | 1801, 2226 |
| LmnI | GCTCC | 6 cut(s) | 96, 220, 517, 907, 1232, 1741 |
| Lsp1109I | GCAGC | 8 cut(s) | 139, 458, 720, 742, 1096, 1681, 2135, 2248 |
| LweI | GCATC | 5 cut(s) | 700, 1329, 1756, 1978, 2439 |
| MaeI | CTAG | 2 cut(s) | 1196, 1800 |
| MaeII | ACGT | 3 cut(s) | 1954, 2149, 2488 |
| MaeIII | GTNAC | 6 cut(s) | 242, 997, 1147, 1305, 2300, 2905 |
| MfeI | CAATTG | 1 cut(s) | 2195 |
| MflI | RGATCY | 5 cut(s) | 882, 1263, 1451, 1492, 1795 |
| MhlI | GDGCHC | 2 cut(s) | 514, 2022 |
| MlyI | GAGTC | 5 cut(s) | 199, 239, 911, 1340, 2698 |
| MmeI | TCCRAC | 5 cut(s) | 330, 371, 509, 894, 1411 |
| Mph1103I | ATGCAT | 2 cut(s) | 715, 2347 |
| MroXI | GAANNNNTTC | 3 cut(s) | 864, 1164, 1941 |
| MseI | TTAA | 7 cut(s) | 65, 144, 329, 603, 779, 2013, 3010 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2447 |
| MspA1I | CMGCKG | 4 cut(s) | 152, 213, 733, 2239 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 121 |
| MspR9I | CCNGG | 5 cut(s) | 121, 815, 1302, 1590, 2364 |
| MunI | CAATTG | 1 cut(s) | 2195 |
| MvaI | CCWGG | 4 cut(s) | 815, 1302, 1590, 2364 |
| MvnI | CGCG | 2 cut(s) | 213, 1329 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 509, 1661, 1829, 1869, 2002 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NlaIV | GGNNCC | 5 cut(s) | 375, 432, 1299, 1797, 2679 |
| NmuCI | GTSAC | 2 cut(s) | 242, 2300 |
| NsiI | ATGCAT | 2 cut(s) | 715, 2347 |
| NspI | RCATGY | 2 cut(s) | 1787, 2345 |
| NspV | TTCGAA | 1 cut(s) | 2059 |
| PaeI | GCATGC | 2 cut(s) | 1787, 2345 |
| PaeR7I | CTCGAG | 1 cut(s) | 2556 |
| PagI | TCATGA | 1 cut(s) | 2290 |
| PceI | AGGCCT | 1 cut(s) | 639 |
| PciSI | GCTCTTC | 2 cut(s) | 1801, 2226 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1951, 1960 |
| PdmI | GAANNNNTTC | 3 cut(s) | 864, 1164, 1941 |
| PfeI | GAWTC | 4 cut(s) | 394, 568, 2107, 2689 |
| Pfl23II | CGTACG | 1 cut(s) | 2075 |
| PfoI | TCCNGGA | 2 cut(s) | 119, 1588 |
| PleI | GAGTC | 5 cut(s) | 198, 239, 911, 1339, 2698 |
| PpsI | GAGTC | 5 cut(s) | 198, 239, 911, 1339, 2698 |
| PpuMI | RGGWCCY | 3 cut(s) | 665, 2677, 2875 |
| Psp124BI | GAGCTC | 1 cut(s) | 514 |
| Psp5II | RGGWCCY | 3 cut(s) | 665, 2677, 2875 |
| Psp6I | CCWGG | 4 cut(s) | 813, 1300, 1588, 2362 |
| PspFI | CCCAGC | 1 cut(s) | 317 |
| PspGI | CCWGG | 4 cut(s) | 813, 1300, 1588, 2362 |
| PspLI | CGTACG | 1 cut(s) | 2075 |
| PspN4I | GGNNCC | 5 cut(s) | 375, 432, 1299, 1797, 2679 |
| PspPI | GGNCC | 9 cut(s) | 4, 167, 231, 363, 665, 1583, 2677, 2875, 2939 |
| PspPPI | RGGWCCY | 3 cut(s) | 665, 2677, 2875 |
| PstI | CTGCAG | 1 cut(s) | 2383 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2387 |
| PsuI | RGATCY | 5 cut(s) | 882, 1263, 1451, 1492, 1795 |
| PvuII | CAGCTG | 1 cut(s) | 733 |
| RsaI | GTAC | 4 cut(s) | 1973, 2077, 2217, 2747 |
| RsaNI | GTAC | 4 cut(s) | 1972, 2076, 2216, 2746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2447 |
| SacI | GAGCTC | 1 cut(s) | 514 |
| SacII | CCGCGG | 1 cut(s) | 214 |
| SalI | GTCGAC | 1 cut(s) | 1965 |
| SapI | GCTCTTC | 2 cut(s) | 1801, 2226 |
| SaqAI | TTAA | 7 cut(s) | 65, 144, 329, 603, 779, 2013, 3010 |
| Sau96I | GGNCC | 9 cut(s) | 4, 167, 231, 363, 665, 1583, 2677, 2875, 2939 |
| SchI | GAGTC | 5 cut(s) | 199, 239, 911, 1340, 2698 |
| ScrFI | CCNGG | 5 cut(s) | 121, 815, 1302, 1590, 2364 |
| SduI | GDGCHC | 2 cut(s) | 514, 2022 |
| SfaNI | GCATC | 5 cut(s) | 700, 1329, 1756, 1978, 2439 |
| SfcI | CTRYAG | 1 cut(s) | 2379 |
| Sfr274I | CTCGAG | 1 cut(s) | 2556 |
| Sfr303I | CCGCGG | 1 cut(s) | 214 |
| SfuI | TTCGAA | 1 cut(s) | 2059 |
| SgrBI | CCGCGG | 1 cut(s) | 214 |
| SinI | GGWCC | 8 cut(s) | 4, 231, 363, 665, 1583, 2677, 2875, 2939 |
| SlaI | CTCGAG | 1 cut(s) | 2556 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2447 |
| SmlI | CTYRAG | 5 cut(s) | 602, 1222, 2201, 2556, 2584 |
| SmoI | CTYRAG | 5 cut(s) | 602, 1222, 2201, 2556, 2584 |
| SphI | GCATGC | 2 cut(s) | 1787, 2345 |
| SseBI | AGGCCT | 1 cut(s) | 639 |
| SsiI | CCGC | 7 cut(s) | 150, 211, 213, 728, 905, 1664, 2239 |
| SspMI | CTAG | 2 cut(s) | 1196, 1800 |
| SstI | GAGCTC | 1 cut(s) | 514 |
| StuI | AGGCCT | 1 cut(s) | 639 |
| StyD4I | CCNGG | 5 cut(s) | 119, 813, 1300, 1588, 2362 |
| StyI | CCWWGG | 2 cut(s) | 1461, 2419 |
| TaaI | ACNGT | 8 cut(s) | 357, 767, 971, 1964, 1971, 2080, 2642, 2943 |
| TaiI | ACGT | 3 cut(s) | 1957, 2152, 2491 |
| TaqI | TCGA | 8 cut(s) | 508, 1839, 1945, 1966, 2059, 2557, 2632, 2895 |
| TaqII | GACCGA | 2 cut(s) | 189, 380 |
| TatI | WGTACW | 2 cut(s) | 1971, 2215 |
| TauI | GCSGC | 2 cut(s) | 152, 213 |
| TfiI | GAWTC | 4 cut(s) | 394, 568, 2107, 2689 |
| Tru1I | TTAA | 7 cut(s) | 65, 144, 329, 603, 779, 2013, 3010 |
| Tru9I | TTAA | 7 cut(s) | 65, 144, 329, 603, 779, 2013, 3010 |
| TscAI | CASTG | 5 cut(s) | 404, 570, 772, 2142, 3003 |
| TseFI | GTSAC | 2 cut(s) | 242, 2300 |
| TseI | GCWGC | 8 cut(s) | 152, 446, 730, 733, 1109, 1694, 2123, 2236 |
| Tsp45I | GTSAC | 2 cut(s) | 242, 2300 |
| TspGWI | ACGGA | 1 cut(s) | 2063 |
| TspRI | CASTG | 5 cut(s) | 404, 570, 772, 2142, 3003 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| VneI | GTGCAC | 1 cut(s) | 2018 |
| VpaK11BI | GGWCC | 8 cut(s) | 4, 231, 363, 665, 1583, 2677, 2875, 2939 |
| XapI | RAATTY | 7 cut(s) | 114, 127, 925, 944, 1414, 1937, 2007 |
| XceI | RCATGY | 2 cut(s) | 1787, 2345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 937 |
| XhoI | CTCGAG | 1 cut(s) | 2556 |
| XmiI | GTMKAC | 2 cut(s) | 1966, 2415 |
| XmnI | GAANNNNTTC | 3 cut(s) | 864, 1164, 1941 |
| XspI | CTAG | 2 cut(s) | 1196, 1800 |
| Zsp2I | ATGCAT | 2 cut(s) | 715, 2347 |