Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006669

Physical Location & Seq

Genomic Coordinates Forward (+)

34530530 .. 34534920

Gene Structure 4391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTTCCCCCTCTCCCTCTCTACTCCTCGCAGCAGCCATCACCCTCACTCTGCTCTTCTCATACTCGGTCAAATTACCATTCCACCCCCGCGACCTACTCCCTCTCCTTCCCAGACAGCTCTCATGGCCAATCCTCAACTCCCTCCACAGCCCAGTCGACCTCCTCCCCACTTTCGTCGGCTCCGCTTCGTCCCAAAACAACACTCTCGGCTGGAAAGGCGCCTGCTTTTACCAGAACACGGCTTGGATGGAGTTCCACAACAAAACCGGCTCACAATTTGGTGGCGGAACTCTTCATATCAAGGTTAGCAAGGCTCATAGTTGGACGTGTATGGATATTTATGTCTTTGCAACTCCATATACTGTCACATGGGATTACTATATTCTGTCGCGGGAGCACACACTCGAGTTTAAGGAGTGGACAGGGAAAGCTGAGTATGAATATGTTAAAAACAGGGGAGTTTCTATATTCCTCATGCAAGCAGGGATGTTAGGCACCCTTCAAGCATTGTGGGATGTCTTTCCCTTGTTTACAAATACAGGATGGGGAGAGCTGTCCAATATTGGGTTTCTCAAAAAGCATATGGGTGCAACCTTTGAGCAACGTCCTCAACCTTGGGTGACAAATATTAGCACTGATGATATTCACTCCGGAGATTTCCTTGCAATATCTAAGATTCGCGGGAGGTGGGGTGGATTTGAGACTCTAGAGAAGTGGGTCAGTGGAGCTTACGCTGGTCATTCTGCGGTTTGTTTAAGGGATTCTGAAGGAAAGTTGTGGGTTGGTGAATCAGGAAATGAAAATGAGCAGGGAGAAGATATTATTGCTATTCTGCCATGGGATGAGTGGTGGGATTTTGAGCTAAACAAAGATGATTCTGATCCCCACATTGCATTGCTTCCCTTGCATCCTGATATCCGAGCGAAGTTTAACGAGACTGCGGCCTGGGAGTATGCAAGGAGCATGGAAGGCCAACCATATGGTTATCATAACATGATATTCAGCTGGATAGATACTATAGATGAAAACTATCCACCCCCTTTGGATGCTCATGTGATTGCTTCTGTTATGACAGTTTGGAATCAAATAAAGCCTACATATGCTGCTAACTTGTGGAATGAAGCCTTGAACAAGCGACTTGAAACTCAGGTATTGTGGAACTGTCTCCTTCAATTGCAATACCGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

45.27

Weight (kDa)

5.44

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27020 AT5G54870 AT5G54870
fragaria_vesca	FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 FvH4_3g22420
malus_domestica	MD03G1205200.v1.1 MD11G1221100.v1.1
prunus_persica	Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210800_v2.0.a1
pyrus_communis	pycom03g15510 pycom11g19510
rosa_chinensis	RchiOBHm_Chr5g0039091
rosa_laevigata	RLG00000033892
rosa_multiflora	Rmu_sc0000533.1_g000029 Rmu_ssc0000410.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042030
rosa_rugosa	Rorug05G0176400
rosa_samantha	Rh5AG262800 Rh5BG267600 Rh5CG300300 Rh5DG274100
rosa_wichuraiana	Rw5G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	221, 497
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	3 cut(s)	93, 394, 684
AccIII	TCCGGA	1 cut(s)	653
AciI	CCGC	7 cut(s)	91, 186, 288, 394, 684, 749, 944
AclWI	GGATC	1 cut(s)	878
AcoI	YGGCCR	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	789
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	241, 567
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	506, 1132, 1145, 1175
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	1 cut(s)	947
AluBI	AGCT	6 cut(s)	121, 434, 556, 731, 865, 1008
AluI	AGCT	6 cut(s)	121, 434, 556, 731, 865, 1008
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	3 cut(s)	698, 932, 1172
AlwI	GGATC	1 cut(s)	878
Ama87I	CYCGRG	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	653
AoxI	GGCC	3 cut(s)	128, 945, 973
ApeKI	GCWGC	3 cut(s)	32, 35, 1106
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	34, 634, 800
AvaI	CYCGRG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	221, 497
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	3 cut(s)	44, 47, 1093
BccI	CCATC	3 cut(s)	47, 244, 540
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	949
BcoDI	GTCTC	3 cut(s)	698, 932, 1172
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	4 cut(s)	33, 36, 945, 1107
BlsI	GCNGC	4 cut(s)	34, 37, 946, 1108
Bme1390I	CCNGG	1 cut(s)	949
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	330
BmiI	GGNNCC	3 cut(s)	184, 223, 499
BmrFI	CCNGG	1 cut(s)	949
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	919, 1039
BmuI	ACTGGG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	617, 839, 948
BsaWI	WCCGGW	1 cut(s)	653
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 679, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 567
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	891, 896
Bse8I	GATNNNNATC	1 cut(s)	882
BseAI	TCCGGA	1 cut(s)	653
BseBI	CCWGG	1 cut(s)	949
BseDI	CCNNGG	3 cut(s)	617, 839, 948
BseGI	GGATG	7 cut(s)	255, 495, 523, 551, 850, 910, 1054
BseJI	GATNNNNATC	1 cut(s)	882
BseLI	CCNNNNNNNGG	2 cut(s)	241, 567
BseMI	GCAATG	2 cut(s)	891, 896
BseMII	CTCAG	2 cut(s)	426, 1163
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	17, 155
BseXI	GCAGC	3 cut(s)	44, 47, 1093
Bsh1236I	CGCG	3 cut(s)	93, 394, 684
BshFI	GGCC	3 cut(s)	130, 947, 975
BshNI	GGYRCC	2 cut(s)	221, 497
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	270, 654
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	241, 567
BsmAI	GTCTC	3 cut(s)	698, 932, 1172
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	130, 947, 975
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	653
Bsp143I	GATC	1 cut(s)	883
Bsp19I	CCATGG	1 cut(s)	839
BspACI	CCGC	7 cut(s)	91, 186, 288, 394, 684, 749, 944
BspANI	GGCC	3 cut(s)	130, 947, 975
BspCNI	CTCAG	2 cut(s)	427, 1162
BspEI	TCCGGA	1 cut(s)	653
BspFNI	CGCG	3 cut(s)	93, 394, 684
BspLI	GGNNCC	3 cut(s)	184, 223, 499
BspPI	GGATC	1 cut(s)	878
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	221, 497
BsrDI	GCAATG	2 cut(s)	891, 896
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	617, 839, 948
BssMI	GATC	1 cut(s)	883
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	617, 839
Bst2UI	CCWGG	1 cut(s)	949
Bst4CI	ACNGT	4 cut(s)	367, 1078, 1166, 1187
Bst6I	CTCTTC	2 cut(s)	62, 300
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	226, 483
BstDEI	CTNAG	3 cut(s)	435, 675, 1149
BstDSI	CCRYGG	1 cut(s)	839
BstF5I	GGATG	7 cut(s)	255, 495, 523, 551, 850, 910, 1054
BstFNI	CGCG	3 cut(s)	93, 394, 684
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	886
BstMAI	GTCTC	3 cut(s)	698, 932, 1172
BstMBI	GATC	1 cut(s)	883
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 219, 907, 972
BstNI	CCWGG	1 cut(s)	949
BstSCI	CCNGG	1 cut(s)	947
BstSFI	CTRYAG	1 cut(s)	1020
BstUI	CGCG	3 cut(s)	93, 394, 684
BstV1I	GCAGC	3 cut(s)	44, 47, 1093
BstXI	CCANNNNNNTGG	1 cut(s)	983
BsuRI	GGCC	3 cut(s)	130, 947, 975
BtgI	CCRYGG	1 cut(s)	839
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	7 cut(s)	255, 495, 523, 551, 850, 910, 1054
BtsIMutI	CAGTG	2 cut(s)	636, 730
Cac8I	GCNNGC	2 cut(s)	226, 483
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	269
CspCI	CAANNNNNGTGG	4 cut(s)	494, 529, 1026, 1061
CviAII	CATG	7 cut(s)	126, 372, 478, 840, 967, 997, 1055
DdeI	CTNAG	3 cut(s)	435, 675, 1149
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	1 cut(s)	885
DpnII	GATC	1 cut(s)	883
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	2 cut(s)	62, 300
EarI	CTCTTC	2 cut(s)	62, 300
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	617, 839
Eco32I	GATATC	1 cut(s)	919
Eco57I	CTGAAG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	947
EcoRV	GATATC	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	617, 839
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	617, 839
FaeI	CATG	7 cut(s)	129, 375, 481, 843, 970, 1000, 1058
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	7 cut(s)	125, 371, 477, 839, 966, 996, 1054
FauI	CCCGC	3 cut(s)	98, 387, 677
FauNDI	CATATG	3 cut(s)	585, 982, 1102
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	33, 36, 945, 1107
FokI	GGATG	7 cut(s)	262, 502, 530, 558, 857, 897, 1061
Fsp4HI	GCNGC	4 cut(s)	33, 36, 945, 1107
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	4 cut(s)	33, 36, 945, 1107
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	130, 947, 975
HapII	CCGG	2 cut(s)	270, 654
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	7 cut(s)	129, 375, 481, 843, 970, 1000, 1058
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	6 cut(s)	679, 706, 764, 791, 878, 1084
HpaII	CCGG	2 cut(s)	270, 654
HphI	GGTGA	3 cut(s)	34, 634, 800
Hpy166II	GTNNAC	3 cut(s)	160, 423, 534
Hpy188I	TCNGA	3 cut(s)	769, 883, 923
Hpy188III	TCNNGA	4 cut(s)	654, 710, 795, 914
Hpy8I	GTNNAC	3 cut(s)	160, 423, 534
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	5 cut(s)	119, 512, 764, 965, 1181
HpyCH4III	ACNGT	4 cut(s)	367, 1078, 1166, 1187
HpyCH4IV	ACGT	2 cut(s)	329, 607
HpyCH4V	TGCA	8 cut(s)	353, 481, 593, 668, 896, 910, 959, 1180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 219, 907, 972
HpyF3I	CTNAG	3 cut(s)	435, 675, 1149
HpySE526I	ACGT	2 cut(s)	329, 607
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	7 cut(s)	129, 375, 481, 843, 970, 1000, 1058
HspAI	GCGC	1 cut(s)	222
KasI	GGCGCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	653
Kzo9I	GATC	1 cut(s)	883
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	4 cut(s)	188, 397, 728, 963
Lsp1109I	GCAGC	3 cut(s)	44, 47, 1093
LweI	GCATC	2 cut(s)	919, 1039
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	2 cut(s)	329, 607
MaeIII	GTNAC	2 cut(s)	367, 622
MalI	GATC	1 cut(s)	885
MboI	GATC	1 cut(s)	883
MboII	GAAGA	3 cut(s)	49, 287, 830
MfeI	CAATTG	1 cut(s)	1175
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	3 cut(s)	74, 278, 1175
MluNI	TGGCCA	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	305
Mox20I	TGGCCA	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	4 cut(s)	414, 450, 758, 933
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	1008
MspI	CCGG	2 cut(s)	270, 654
MspR9I	CCNGG	1 cut(s)	949
MunI	CAATTG	1 cut(s)	1175
MvaI	CCWGG	1 cut(s)	949
MvnI	CGCG	3 cut(s)	93, 394, 684
MwoI	GCNNNNNNNGC	4 cut(s)	127, 219, 907, 972
NarI	GGCGCC	1 cut(s)	222
NcoI	CCATGG	1 cut(s)	839
NdeI	CATATG	3 cut(s)	585, 982, 1102
NdeII	GATC	1 cut(s)	883
NlaIII	CATG	7 cut(s)	129, 375, 481, 843, 970, 1000, 1058
NlaIV	GGNNCC	3 cut(s)	184, 223, 499
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	367, 622
PaeR7I	CTCGAG	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	5 cut(s)	679, 764, 791, 878, 1084
PkrI	GCNGC	4 cut(s)	34, 37, 946, 1108
PleI	GAGTC	1 cut(s)	700
PluTI	GGCGCC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	947
PspN4I	GGNNCC	3 cut(s)	184, 223, 499
PspXI	VCTCGAGB	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	1008
RseI	CAYNNNNRTG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	414, 450, 758, 933
SatI	GCNGC	4 cut(s)	33, 36, 945, 1107
Sau3AI	GATC	1 cut(s)	883
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	949
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	2 cut(s)	919, 1039
SfcI	CTRYAG	1 cut(s)	1020
SfoI	GGCGCC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	3 cut(s)	74, 278, 1175
SsiI	CCGC	7 cut(s)	91, 186, 288, 394, 684, 749, 944
SspDI	GGCGCC	1 cut(s)	221
SspI	AATATT	2 cut(s)	565, 631
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	947
StyI	CCWWGG	2 cut(s)	617, 839
TaaI	ACNGT	4 cut(s)	367, 1078, 1166, 1187
TaiI	ACGT	2 cut(s)	332, 610
TaqI	TCGA	2 cut(s)	159, 408
TaqII	GACCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	74, 278, 1175
TauI	GCSGC	1 cut(s)	947
TfiI	GAWTC	5 cut(s)	679, 764, 791, 878, 1084
Tru1I	TTAA	4 cut(s)	414, 450, 758, 933
Tru9I	TTAA	4 cut(s)	414, 450, 758, 933
TscAI	CASTG	2 cut(s)	643, 730
TseFI	GTSAC	2 cut(s)	367, 622
TseI	GCWGC	3 cut(s)	32, 35, 1106
Tsp45I	GTSAC	2 cut(s)	367, 622
TspDTI	ATGAA	5 cut(s)	287, 456, 816, 1041, 1137
TspRI	CASTG	2 cut(s)	643, 730
XbaI	TCTAGA	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XhoI	CTCGAG	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.