Prupe.4G210800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
13151523 .. 13155994
4472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G210800.1

Sequence Viewer

Length: 1569 bp
ATGGCTTCCTCTCCCTCTTTACTCTTTGCGGCCGCCGTAATCACCCTCACTTTGCTCTTCGCATATTCCGCCAAATTACCATTTCACCCCCGAGACGTCCTCCCTCTCTTGCCCAGACAGGTTTCATGGCCAATCCTCAACTCTCTGCACGGTGCGGTCGATCTCTTGCCCACTTTCGTGGGCTCAGCTTCGTCTCCAAACGACAGTTTGGAGTGGAAAGGTGCGTGCTTTTACCAGAACACAGCTTGGATGGAGTTCCACAACAAGAGTGGCAGCGAATTTGGTGGCGGAACTCTTCATATCAAGGTTGATAAGGCTCATAGTTGGACATGTATGGATATTTATGTCTTTGCAACTCCATACACTGTCACATGGGATTACTATTTCCTGTCTCGGGAGCATACACTTGAGTTTAAAGAGTGGCAAGGAAAAGCTGAGTTTGAATATGTGAAAAACAGGGGAGTTTCTATTTTCCTCATGCAAGCAGGGATGCTAGGCACCCTTCAAGCATTGTGGGATGTCTTTCCCTTGTTTACAAATACTGGATGGGGTGAGAACTCCAATATTGGGTTTCTCGAGAAGCACATGGGTGCTTCCTTTCATCAACGTCCTCAACCTTGGGTCACAAATATTAGCGTTGATGATATTCACTCTGGAGATTTCCTAGCATTATCTAAAATTCGTGGGCGGTGGGGTGGATTTGAGACACTAGAGAAGTGGGTCAGTGGAGCTTACGCTGGTCATTCTGCCGTTTGTTTAAAGGATTCTGAAGGAAATCTTTGGGTTGGTGAATCAGGACATGAAAACGAGAAGGGAGAAGATGTCATTGCTGTGCTGCCATGGGATGAGTGGTGGGAGTTTGAGCTGAATAAAGATGATTCCAATCCCCATATTGCGTTGCTTCCCTTGCATCCTGATATACGAGCAAAGTTTAATGAGACTGCTGCCTGGGAGTACGCAAGGAGCATGGAAGGCCAACCATATGGTTATCATAACTTGATATTCAGCTGGATAGATACTATACAAGACAACTATCCACCCCCTTTGGATGCTCACGTGGTTGCTTCTGTTATGACTGTTTGGAATCATATACAGCCTACATATGCTGCGAACATGTGGAATGAAGCCTTGAACAAGAGACTTGGAACACAGAACCTTAGTTTTCCGGATATTCTAGTTGAAGTTGAAAAGAGAGGATCATCTTTTGACGAACTACTGACAGTTCCCGAACAGGATGATTGGCTATACAGTGATGGGAAGTCAACATCGTGTGTGGCCTTCATTCTTGAAATGTATAAGGAGGCAGGACTGTTTGATCCAATTGCTAGCTCTATCCAAGTCACTGAATTTACGATAAAAGATGCTTATATGCTGAAATTCTTTGAAAATAATTCAAGCCGCCTGCCAAAGTGGTGCAATGACGGGGACAGTGTGAAGCTTCCTTTCTGTCAGATTAAAGGGAAGTATCGAATGGAACTACCTGAATACAACAGCATGGAACCATACTCCCATATGAATGAAAGGTGCGAATCACTGCCCCCAAAGTACTCCAGGTCACGGAATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

59.51

Weight (kDa)

5.15

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 497
AccIII TCCGGA 1 cut(s) 1165
AciI CCGC 7 cut(s) 29, 33, 69, 155, 288, 688, 1399
AclWI GGATC 2 cut(s) 1204, 1310
AcoI YGGCCR 2 cut(s) 30, 128
AcsI RAATTY 4 cut(s) 278, 678, 1346, 1376
AcuI CTGAAG 1 cut(s) 789
AcvI CACGTG 1 cut(s) 1057
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 956, 1547
AfiI CCNNNNNNNGG 3 cut(s) 394, 567, 1557
AflIII ACRYGT 2 cut(s) 329, 1113
AgsI TTSAA 8 cut(s) 443, 506, 1132, 1181, 1187, 1289, 1385, 1395
AjnI CCWGG 2 cut(s) 947, 1550
AleI CACNNNNGTG 2 cut(s) 176, 588
AluBI AGCT 8 cut(s) 188, 245, 434, 731, 865, 1008, 1329, 1438
AluI AGCT 8 cut(s) 188, 245, 434, 731, 865, 1008, 1329, 1438
Alw26I GTCTC 6 cut(s) 87, 198, 396, 698, 932, 1132
AlwI GGATC 2 cut(s) 1204, 1310
Ama87I CYCGRG 3 cut(s) 90, 393, 575
Aor13HI TCCGGA 1 cut(s) 1165
AoxI GGCC 4 cut(s) 30, 128, 973, 1275
ApeKI GCWGC 4 cut(s) 273, 835, 944, 1106
ApoI RAATTY 4 cut(s) 278, 678, 1346, 1376
AsuHPI GGTGA 4 cut(s) 34, 77, 563, 800
AsuNHI GCTAGC 1 cut(s) 1325
AvaI CYCGRG 3 cut(s) 90, 393, 575
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 1057
BbvI GCAGC 4 cut(s) 285, 822, 931, 1093
BccI CCATC 3 cut(s) 244, 540, 1247
BceAI ACGGC 2 cut(s) 20, 734
BciT130I CCWGG 2 cut(s) 949, 1552
BcoDI GTCTC 6 cut(s) 87, 198, 396, 698, 932, 1132
BfaI CTAG 5 cut(s) 494, 665, 710, 1175, 1326
BisI GCNGC 7 cut(s) 30, 33, 274, 836, 945, 1107, 1399
BlpI GCTNAGC 1 cut(s) 184
BlsI GCNGC 7 cut(s) 31, 34, 275, 837, 946, 1108, 1400
BmcAI AGTACT 1 cut(s) 1547
Bme1390I CCNGG 2 cut(s) 949, 1552
BmeT110I CYCGRG 3 cut(s) 90, 393, 575
BmiI GGNNCC 2 cut(s) 499, 1500
BmrFI CCNGG 2 cut(s) 949, 1552
BmsI GCATC 4 cut(s) 480, 919, 1039, 1351
BmtI GCTAGC 1 cut(s) 1329
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpmI CTGGAG 2 cut(s) 675, 1534
Bpu1102I GCTNAGC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 1057
BsaBI GATNNNNATC 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 617, 839, 948
BsaWI WCCGGW 1 cut(s) 1165
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 3 cut(s) 394, 567, 1557
Bse1I ACTGG 1 cut(s) 547
Bse3DI GCAATG 2 cut(s) 825, 1423
Bse8I GATNNNNATC 1 cut(s) 882
BseAI TCCGGA 1 cut(s) 1165
BseBI CCWGG 2 cut(s) 949, 1552
BseDI CCNNGG 3 cut(s) 617, 839, 948
BseGI GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 3 cut(s) 394, 567, 1557
BseMI GCAATG 2 cut(s) 825, 1423
BseMII CTCAG 2 cut(s) 198, 426
BseNI ACTGG 1 cut(s) 547
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 4 cut(s) 285, 822, 931, 1093
BsgI GTGCAG 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 33, 159
BshFI GGCC 4 cut(s) 32, 130, 975, 1277
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 2 cut(s) 33, 159
BsiHKCI CYCGRG 3 cut(s) 90, 393, 575
BsiSI CCGG 1 cut(s) 1166
BslFI GGGAC 1 cut(s) 1439
BslI CCNNNNNNNGG 3 cut(s) 394, 567, 1557
BsmAI GTCTC 6 cut(s) 87, 198, 396, 698, 932, 1132
BsmBI CGTCTC 2 cut(s) 87, 198
BsmFI GGGAC 1 cut(s) 1439
BsnI GGCC 4 cut(s) 32, 130, 975, 1277
BsoBI CYCGRG 3 cut(s) 90, 393, 575
Bsp1286I GDGCHC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 1165
Bsp143I GATC 3 cut(s) 160, 1196, 1315
Bsp1720I GCTNAGC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 7 cut(s) 29, 33, 69, 155, 288, 688, 1399
BspANI GGCC 4 cut(s) 32, 130, 975, 1277
BspCNI CTCAG 2 cut(s) 197, 427
BspEI TCCGGA 1 cut(s) 1165
BspLI GGNNCC 2 cut(s) 499, 1500
BspOI GCTAGC 1 cut(s) 1329
BspPI GGATC 2 cut(s) 1204, 1310
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 2 cut(s) 825, 1423
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 3 cut(s) 617, 839, 948
BssMI GATC 3 cut(s) 160, 1196, 1315
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 617, 839
Bst2UI CCWGG 2 cut(s) 949, 1552
Bst4CI ACNGT 8 cut(s) 152, 206, 367, 1078, 1222, 1250, 1311, 1430
Bst6I CTCTTC 2 cut(s) 62, 300
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 1057
BstC8I GCNNGC 4 cut(s) 226, 483, 1327, 1403
BstDEI CTNAG 3 cut(s) 184, 435, 1157
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BstKTI GATC 3 cut(s) 163, 1199, 1318
BstMAI GTCTC 6 cut(s) 87, 198, 396, 698, 932, 1132
BstMBI GATC 3 cut(s) 160, 1196, 1315
BstMCI CGRYCG 2 cut(s) 33, 159
BstMWI GCNNNNNNNGC 3 cut(s) 68, 907, 972
BstNI CCWGG 2 cut(s) 949, 1552
BstNSI RCATGY 2 cut(s) 333, 1117
BstSCI CCNGG 2 cut(s) 947, 1550
BstV1I GCAGC 4 cut(s) 285, 822, 931, 1093
BstXI CCANNNNNNTGG 2 cut(s) 178, 983
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 4 cut(s) 32, 130, 975, 1277
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 8 cut(s) 255, 495, 523, 551, 850, 910, 1054, 1240
BtsI GCAGTG 1 cut(s) 1532
BtsIMutI CAGTG 6 cut(s) 363, 730, 1255, 1341, 1435, 1532
Cac8I GCNNGC 4 cut(s) 226, 483, 1327, 1403
CciNI GCGGCCGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 955, 1546
CspCI CAANNNNNGTGG 6 cut(s) 250, 285, 494, 529, 1026, 1061
CviQI GTAC 2 cut(s) 955, 1546
DdeI CTNAG 3 cut(s) 184, 435, 1157
DpnI GATC 3 cut(s) 162, 1198, 1317
DpnII GATC 3 cut(s) 160, 1196, 1315
DraI TTTAAA 2 cut(s) 415, 759
EaeI YGGCCR 2 cut(s) 30, 128
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 62, 300
EarI CTCTTC 2 cut(s) 62, 300
EciI GGCGGA 2 cut(s) 58, 303
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 617, 839
Eco24I GRGCYC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 1057
Eco88I CYCGRG 3 cut(s) 90, 393, 575
EcoRII CCWGG 2 cut(s) 947, 1550
EcoT14I CCWWGG 2 cut(s) 617, 839
EcoT38I GRGCYC 1 cut(s) 185
ErhI CCWWGG 2 cut(s) 617, 839
Esp3I CGTCTC 2 cut(s) 87, 198
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 1439
FauNDI CATATG 3 cut(s) 982, 1102, 1512
Fnu4HI GCNGC 7 cut(s) 30, 33, 274, 836, 945, 1107, 1399
FokI GGATG 8 cut(s) 262, 502, 530, 558, 857, 897, 1061, 1247
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 7 cut(s) 30, 33, 274, 836, 945, 1107, 1399
FspBI CTAG 5 cut(s) 494, 665, 710, 1175, 1326
GluI GCNGC 7 cut(s) 30, 33, 274, 836, 945, 1107, 1399
GsuI CTGGAG 2 cut(s) 675, 1534
HaeIII GGCC 4 cut(s) 32, 130, 975, 1277
HapII CCGG 1 cut(s) 1166
Hin1I GRCGYC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 1263
HindII GTYRAC 1 cut(s) 1263
HindIII AAGCTT 1 cut(s) 1436
HinfI GANTC 5 cut(s) 764, 791, 878, 1084, 1529
HpaII CCGG 1 cut(s) 1166
HphI GGTGA 4 cut(s) 34, 77, 563, 800
Hpy166II GTNNAC 2 cut(s) 534, 1263
Hpy188I TCNGA 2 cut(s) 769, 1452
Hpy188III TCNNGA 9 cut(s) 395, 575, 577, 654, 795, 914, 1166, 1226, 1286
Hpy8I GTNNAC 2 cut(s) 534, 1263
HpyAV CCTTC 5 cut(s) 512, 764, 805, 965, 1288
HpyCH4III ACNGT 8 cut(s) 152, 206, 367, 1078, 1222, 1250, 1311, 1430
HpyCH4IV ACGT 3 cut(s) 96, 607, 1056
HpyCH4V TGCA 5 cut(s) 148, 353, 481, 910, 1416
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 907, 972
HpyF3I CTNAG 3 cut(s) 184, 435, 1157
HpySE526I ACGT 3 cut(s) 96, 607, 1056
Hsp92I GRCGYC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 1165
Kzo9I GATC 3 cut(s) 160, 1196, 1315
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 397, 728, 963
Lsp1109I GCAGC 4 cut(s) 285, 822, 931, 1093
LweI GCATC 4 cut(s) 480, 919, 1039, 1351
MaeI CTAG 5 cut(s) 494, 665, 710, 1175, 1326
MaeII ACGT 3 cut(s) 96, 607, 1056
MaeIII GTNAC 4 cut(s) 367, 622, 1339, 1554
MalI GATC 3 cut(s) 162, 1198, 1317
MboI GATC 3 cut(s) 160, 1196, 1315
MboII GAAGA 3 cut(s) 49, 287, 830
MfeI CAATTG 1 cut(s) 1320
MhlI GDGCHC 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 8 cut(s) 74, 278, 678, 1320, 1346, 1376, 1390, 1561
MluNI TGGCCA 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 130
MroI TCCGGA 1 cut(s) 1165
MscI TGGCCA 1 cut(s) 130
MseI TTAA 4 cut(s) 414, 758, 933, 1455
MslI CAYNNNNRTG 4 cut(s) 176, 588, 830, 1515
Msp20I TGGCCA 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 1008
MspI CCGG 1 cut(s) 1166
MspR9I CCNGG 2 cut(s) 949, 1552
MunI CAATTG 1 cut(s) 1320
MvaI CCWGG 2 cut(s) 949, 1552
MwoI GCNNNNNNNGC 3 cut(s) 68, 907, 972
NcoI CCATGG 1 cut(s) 839
NdeI CATATG 3 cut(s) 982, 1102, 1512
NdeII GATC 3 cut(s) 160, 1196, 1315
NheI GCTAGC 1 cut(s) 1325
NlaIV GGNNCC 2 cut(s) 499, 1500
NmuCI GTSAC 4 cut(s) 367, 622, 1339, 1554
NotI GCGGCCGC 1 cut(s) 30
NspI RCATGY 2 cut(s) 333, 1117
OliI CACNNNNGTG 2 cut(s) 176, 588
PaeR7I CTCGAG 1 cut(s) 575
PciI ACATGT 2 cut(s) 329, 1113
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PfeI GAWTC 5 cut(s) 764, 791, 878, 1084, 1529
PkrI GCNGC 7 cut(s) 31, 34, 275, 837, 946, 1108, 1400
PmaCI CACGTG 1 cut(s) 1057
PmlI CACGTG 1 cut(s) 1057
Ppu21I YACGTR 1 cut(s) 1057
PscI ACATGT 2 cut(s) 329, 1113
Psp6I CCWGG 2 cut(s) 947, 1550
PspCI CACGTG 1 cut(s) 1057
PspGI CCWGG 2 cut(s) 947, 1550
PspN4I GGNNCC 2 cut(s) 499, 1500
PvuII CAGCTG 1 cut(s) 1008
RsaI GTAC 2 cut(s) 956, 1547
RsaNI GTAC 2 cut(s) 955, 1546
RseI CAYNNNNRTG 4 cut(s) 176, 588, 830, 1515
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 414, 758, 933, 1455
SatI GCNGC 7 cut(s) 30, 33, 274, 836, 945, 1107, 1399
Sau3AI GATC 3 cut(s) 160, 1196, 1315
ScaI AGTACT 1 cut(s) 1547
ScrFI CCNGG 2 cut(s) 949, 1552
SduI GDGCHC 1 cut(s) 185
SfaNI GCATC 4 cut(s) 480, 919, 1039, 1351
Sfr274I CTCGAG 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 4 cut(s) 176, 588, 830, 1515
SmlI CTYRAG 2 cut(s) 407, 575
SmoI CTYRAG 2 cut(s) 407, 575
Sse9I AATT 8 cut(s) 74, 278, 678, 1320, 1346, 1376, 1390, 1561
SsiI CCGC 7 cut(s) 29, 33, 69, 155, 288, 688, 1399
SspI AATATT 2 cut(s) 565, 631
SspMI CTAG 5 cut(s) 494, 665, 710, 1175, 1326
StyD4I CCNGG 2 cut(s) 947, 1550
StyI CCWWGG 2 cut(s) 617, 839
TaaI ACNGT 8 cut(s) 152, 206, 367, 1078, 1222, 1250, 1311, 1430
TaiI ACGT 3 cut(s) 99, 610, 1059
TaqI TCGA 3 cut(s) 159, 576, 1468
TasI AATT 8 cut(s) 74, 278, 678, 1320, 1346, 1376, 1390, 1561
TatI WGTACW 1 cut(s) 1545
TauI GCSGC 3 cut(s) 32, 35, 1401
TfiI GAWTC 5 cut(s) 764, 791, 878, 1084, 1529
Tru1I TTAA 4 cut(s) 414, 758, 933, 1455
Tru9I TTAA 4 cut(s) 414, 758, 933, 1455
TscAI CASTG 6 cut(s) 370, 730, 1255, 1348, 1435, 1539
TseFI GTSAC 4 cut(s) 367, 622, 1339, 1554
TseI GCWGC 4 cut(s) 273, 835, 944, 1106
Tsp45I GTSAC 4 cut(s) 367, 622, 1339, 1554
TspDTI ATGAA 8 cut(s) 114, 287, 590, 816, 1137, 1270, 1529, 1533
TspRI CASTG 6 cut(s) 370, 730, 1255, 1348, 1435, 1539
XapI RAATTY 4 cut(s) 278, 678, 1346, 1376
XceI RCATGY 2 cut(s) 333, 1117
XcmI CCANNNNNNNNNTGG 2 cut(s) 266, 846
XhoI CTCGAG 1 cut(s) 575
XspI CTAG 5 cut(s) 494, 665, 710, 1175, 1326
ZraI GACGTC 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 1547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.