pycom03g15510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0006669
Physical Location & Seq
Reverse (-)
16758729 .. 16761617
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15510.6

Sequence Viewer

Length: 1209 bp
ATGGCTTCCTCTCCCTCCCTACTCTTCGCAGCCGCCATAACGGCCCTCACTTTGCTCTCCGCACAGTCCGTCAAACTACCATTTCACCCCCGCGACGTCCTCCCTCTCCTGCCCAGACAGATTTCATGGCCAATCCTCAACTCTCTGCACAGCGCGGTCGACCTCCTGCCCACTTTCGTCGGCTCGGCGTCGTCCCCCAACCACATCGTGGAGTGGAAAGGTGCGTGCTTTTACCAAAACACAGCGTGGATGGAGTTCCACAACAAGACTGGCAGCGAATTCGGCGGCGGAACTCTTCATCTCAAGGTTAGTAAGGCTCACAGTTGGACATGTATGGATATTTATGTCTTTGCAACTCCATATACTGTCACGTGGGATTACTATTTCCTATCTCGGGAGCATACACTTGAGTTTAAAGAGTGGCAAGGAAAAGATGAGTTTGAATATGTGAAAAACAGGGGAGTTTCTATTTTCCTTATGCAAGCAGGGATGATAGGCACCCTTGAAGCGTTGTGGGATGTCTTCCCATTGTTTACAAATACTGGATGGGGTGAGAATTCCAATATTGGGTTTCTCGAGAAGCACATGGGTGCTTCCTTTAATCAGCGTCCTCAACCTTGGGTAACAAATATTAGCATTGATGATATTCACTCTGGAGATTTCCTAGCAATATCCAAGATTCGTGGGCGGTGGGGTGGATTTGAGACTCTAGAGAAGTGGGTGAGTGGAGCTTATGCTGGTCATTCTGCTGTTTGTTTAAAGGATTCTGAAGGAAAGCTATGGGTTGGAGAATCAGGACACGAAAATGAGAAGGGAGAAGATATTATTGCTGTGCTGCCATGGGATGAGTGGTGGGAATTTGAGCTAAATAAAGATGATTCCAATCCCCATATTGCGTTGCTTCCCTTGCATCCTGATATACGAGCAAAGTTTAATGAGACTGCTGCCTGGGAGTATGCAAGGAGCATGGAAGGCCAGCCTTATGGTTATCATAACATGATATTCAGCTGGATAGATACTATAGAAGACAACTATCCACCCCCTTTGGATGCTCACCTGGTGGCTTCTGTTATGACTGTTTGGAATCGAATACAGCCTGCATATGCTGCAAACATGTGGAATGAAGCATTGAACAAGAGACTTGGAACACAGAACCTTAGTTTTCCTGATATTCTTGTTGAAGTTGAAAAGAGTGGATCGTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

45.59

Weight (kDa)

5.22

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 159
AccII CGCG 2 cut(s) 93, 155
AciI CCGC 7 cut(s) 33, 60, 91, 155, 285, 288, 688
AclWI GGATC 1 cut(s) 1204
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 3 cut(s) 278, 556, 857
AcuI CTGAAG 1 cut(s) 789
AcvI CACGTG 1 cut(s) 372
AcyI GRCGYC 2 cut(s) 96, 188
AdeI CACNNNGTG 3 cut(s) 208, 246, 1060
AfiI CCNNNNNNNGG 3 cut(s) 208, 394, 567
AflIII ACRYGT 2 cut(s) 329, 1113
AgsI TTSAA 5 cut(s) 443, 506, 1132, 1181, 1187
AjnI CCWGG 2 cut(s) 947, 1056
AleI CACNNNNGTG 1 cut(s) 588
AluBI AGCT 4 cut(s) 731, 778, 865, 1008
AluI AGCT 4 cut(s) 731, 778, 865, 1008
Alw26I GTCTC 3 cut(s) 698, 932, 1132
AlwI GGATC 1 cut(s) 1204
Ama87I CYCGRG 2 cut(s) 393, 575
AoxI GGCC 3 cut(s) 42, 128, 973
ApeKI GCWGC 5 cut(s) 29, 273, 835, 944, 1106
ApoI RAATTY 3 cut(s) 278, 556, 857
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 4 cut(s) 77, 563, 733, 1046
AvaI CYCGRG 2 cut(s) 393, 575
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 497
BbrPI CACGTG 1 cut(s) 372
BbsI GAAGAC 2 cut(s) 514, 1032
BbvI GCAGC 5 cut(s) 41, 285, 822, 931, 1093
BccI CCATC 2 cut(s) 244, 540
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 2 cut(s) 949, 1058
BcoDI GTCTC 3 cut(s) 698, 932, 1132
BfaI CTAG 2 cut(s) 665, 710
BfmI CTRYAG 1 cut(s) 1020
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 7 cut(s) 30, 33, 274, 286, 836, 945, 1107
BlsI GCNGC 7 cut(s) 31, 34, 275, 287, 837, 946, 1108
Bme1390I CCNGG 2 cut(s) 949, 1058
BmeT110I CYCGRG 2 cut(s) 393, 575
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 949, 1058
BmsI GCATC 2 cut(s) 919, 1039
BpiI GAAGAC 2 cut(s) 514, 1032
BpmI CTGGAG 1 cut(s) 675
BpuEI CTTGAG 2 cut(s) 287, 428
BsaAI YACGTR 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 882
BsaHI GRCGYC 2 cut(s) 96, 188
BsaJI CCNNGG 3 cut(s) 617, 839, 948
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 394, 567
Bse1I ACTGG 2 cut(s) 274, 547
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 949, 1058
BseDI CCNNGG 3 cut(s) 617, 839, 948
BseGI GGATG 7 cut(s) 255, 495, 523, 551, 850, 910, 1054
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 3 cut(s) 208, 394, 567
BseNI ACTGG 2 cut(s) 274, 547
BseXI GCAGC 5 cut(s) 41, 285, 822, 931, 1093
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 93, 155
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 3 cut(s) 44, 130, 975
BshNI GGYRCC 1 cut(s) 497
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 2 cut(s) 393, 575
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 3 cut(s) 208, 394, 567
BsmAI GTCTC 3 cut(s) 698, 932, 1132
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 3 cut(s) 44, 130, 975
BsoBI CYCGRG 2 cut(s) 393, 575
Bsp143I GATC 1 cut(s) 1196
Bsp19I CCATGG 1 cut(s) 839
BspACI CCGC 7 cut(s) 33, 60, 91, 155, 285, 288, 688
BspANI GGCC 3 cut(s) 44, 130, 975
BspFNI CGCG 2 cut(s) 93, 155
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 1 cut(s) 1204
BspT107I GGYRCC 1 cut(s) 497
BsrI ACTGG 2 cut(s) 274, 547
BssECI CCNNGG 3 cut(s) 617, 839, 948
BssMI GATC 1 cut(s) 1196
BssNI GRCGYC 2 cut(s) 96, 188
BssT1I CCWWGG 2 cut(s) 617, 839
Bst2UI CCWGG 2 cut(s) 949, 1058
Bst4CI ACNGT 4 cut(s) 66, 323, 367, 1078
Bst6I CTCTTC 2 cut(s) 29, 300
BstACI GRCGYC 2 cut(s) 96, 188
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstBAI YACGTR 1 cut(s) 372
BstC8I GCNNGC 4 cut(s) 226, 483, 977, 1098
BstDEI CTNAG 1 cut(s) 1157
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 7 cut(s) 255, 495, 523, 551, 850, 910, 1054
BstFNI CGCG 2 cut(s) 93, 155
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 1 cut(s) 1199
BstMAI GTCTC 3 cut(s) 698, 932, 1132
BstMBI GATC 1 cut(s) 1196
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 5 cut(s) 41, 282, 907, 972, 1106
BstNI CCWGG 2 cut(s) 949, 1058
BstNSI RCATGY 2 cut(s) 333, 1117
BstSCI CCNGG 2 cut(s) 947, 1056
BstSFI CTRYAG 1 cut(s) 1020
BstUI CGCG 2 cut(s) 93, 155
BstV1I GCAGC 5 cut(s) 41, 285, 822, 931, 1093
BstV2I GAAGAC 2 cut(s) 514, 1032
BstXI CCANNNNNNTGG 1 cut(s) 983
BsuRI GGCC 3 cut(s) 44, 130, 975
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 7 cut(s) 255, 495, 523, 551, 850, 910, 1054
Cac8I GCNNGC 4 cut(s) 226, 483, 977, 1098
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 2 cut(s) 177, 596
CsiI ACCWGGT 1 cut(s) 1056
CspCI CAANNNNNGTGG 4 cut(s) 664, 699, 1026, 1061
CviAII CATG 7 cut(s) 126, 330, 586, 840, 967, 997, 1114
DdeI CTNAG 1 cut(s) 1157
DpnI GATC 1 cut(s) 1198
DpnII GATC 1 cut(s) 1196
DraI TTTAAA 2 cut(s) 415, 759
DraIII CACNNNGTG 3 cut(s) 208, 246, 1060
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 29, 300
EarI CTCTTC 2 cut(s) 29, 300
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 617, 839
Eco57I CTGAAG 1 cut(s) 789
Eco72I CACGTG 1 cut(s) 372
Eco88I CYCGRG 2 cut(s) 393, 575
EcoRI GAATTC 2 cut(s) 278, 556
EcoRII CCWGG 2 cut(s) 947, 1056
EcoT14I CCWWGG 2 cut(s) 617, 839
ErhI CCWWGG 2 cut(s) 617, 839
FaeI CATG 7 cut(s) 129, 333, 589, 843, 970, 1000, 1117
FaqI GGGAC 1 cut(s) 178
FatI CATG 7 cut(s) 125, 329, 585, 839, 966, 996, 1113
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 1102
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 7 cut(s) 30, 33, 274, 286, 836, 945, 1107
FokI GGATG 7 cut(s) 262, 502, 530, 558, 857, 897, 1061
Fsp4HI GCNGC 7 cut(s) 30, 33, 274, 286, 836, 945, 1107
FspBI CTAG 2 cut(s) 665, 710
GlaI GCGC 1 cut(s) 154
GluI GCNGC 7 cut(s) 30, 33, 274, 286, 836, 945, 1107
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 3 cut(s) 44, 130, 975
HgaI GACGC 2 cut(s) 177, 596
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 2 cut(s) 96, 188
Hin1II CATG 7 cut(s) 129, 333, 589, 843, 970, 1000, 1117
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 6 cut(s) 679, 706, 764, 791, 878, 1084
HphI GGTGA 4 cut(s) 77, 563, 733, 1046
Hpy166II GTNNAC 2 cut(s) 160, 534
Hpy188I TCNGA 1 cut(s) 769
Hpy188III TCNNGA 8 cut(s) 395, 575, 577, 654, 710, 795, 914, 1166
Hpy8I GTNNAC 2 cut(s) 160, 534
Hpy99I CGWCG 3 cut(s) 98, 182, 193
HpyAV CCTTC 3 cut(s) 764, 805, 965
HpyCH4III ACNGT 4 cut(s) 66, 323, 367, 1078
HpyCH4IV ACGT 2 cut(s) 96, 371
HpyCH4V TGCA 7 cut(s) 148, 353, 481, 910, 959, 1100, 1109
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 282, 907, 972, 1106
HpyF3I CTNAG 1 cut(s) 1157
HpySE526I ACGT 2 cut(s) 96, 371
Hsp92I GRCGYC 2 cut(s) 96, 188
Hsp92II CATG 7 cut(s) 129, 333, 589, 843, 970, 1000, 1117
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 1196
LmnI GCTCC 3 cut(s) 397, 728, 963
Lsp1109I GCAGC 5 cut(s) 41, 285, 822, 931, 1093
LweI GCATC 2 cut(s) 919, 1039
MabI ACCWGGT 1 cut(s) 1056
MaeI CTAG 2 cut(s) 665, 710
MaeII ACGT 2 cut(s) 96, 371
MaeIII GTNAC 2 cut(s) 367, 622
MalI GATC 1 cut(s) 1198
MboI GATC 1 cut(s) 1196
MboII GAAGA 5 cut(s) 16, 287, 514, 830, 1037
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 3 cut(s) 278, 556, 857
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 2 cut(s) 305, 766
MnlI CCTC 8 cut(s) 19, 25, 56, 110, 114, 146, 173, 621
Mox20I TGGCCA 1 cut(s) 130
MscI TGGCCA 1 cut(s) 130
MseI TTAA 4 cut(s) 414, 600, 758, 933
MslI CAYNNNNRTG 2 cut(s) 588, 804
Msp20I TGGCCA 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 1008
MspR9I CCNGG 2 cut(s) 949, 1058
MvaI CCWGG 2 cut(s) 949, 1058
MvnI CGCG 2 cut(s) 93, 155
MwoI GCNNNNNNNGC 5 cut(s) 41, 282, 907, 972, 1106
NcoI CCATGG 1 cut(s) 839
NdeI CATATG 1 cut(s) 1102
NdeII GATC 1 cut(s) 1196
NlaIII CATG 7 cut(s) 129, 333, 589, 843, 970, 1000, 1117
NlaIV GGNNCC 1 cut(s) 499
NmeAIII GCCGAG 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 367
NspI RCATGY 2 cut(s) 333, 1117
OliI CACNNNNGTG 1 cut(s) 588
PaeR7I CTCGAG 1 cut(s) 575
PciI ACATGT 2 cut(s) 329, 1113
PfeI GAWTC 5 cut(s) 679, 764, 791, 878, 1084
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 7 cut(s) 31, 34, 275, 287, 837, 946, 1108
PleI GAGTC 1 cut(s) 700
PmaCI CACGTG 1 cut(s) 372
PmlI CACGTG 1 cut(s) 372
PpsI GAGTC 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 372
PscI ACATGT 2 cut(s) 329, 1113
Psp6I CCWGG 2 cut(s) 947, 1056
PspCI CACGTG 1 cut(s) 372
PspGI CCWGG 2 cut(s) 947, 1056
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 1008
RseI CAYNNNNRTG 2 cut(s) 588, 804
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 4 cut(s) 414, 600, 758, 933
SatI GCNGC 7 cut(s) 30, 33, 274, 286, 836, 945, 1107
Sau3AI GATC 1 cut(s) 1196
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 949, 1058
SexAI ACCWGGT 1 cut(s) 1056
SfaNI GCATC 2 cut(s) 919, 1039
SfcI CTRYAG 1 cut(s) 1020
Sfr274I CTCGAG 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 588, 804
SmlI CTYRAG 3 cut(s) 302, 407, 575
SmoI CTYRAG 3 cut(s) 302, 407, 575
Sse9I AATT 3 cut(s) 278, 556, 857
SsiI CCGC 7 cut(s) 33, 60, 91, 155, 285, 288, 688
SspI AATATT 2 cut(s) 565, 631
SspMI CTAG 2 cut(s) 665, 710
StyD4I CCNGG 2 cut(s) 947, 1056
StyI CCWWGG 2 cut(s) 617, 839
TaaI ACNGT 4 cut(s) 66, 323, 367, 1078
TaiI ACGT 2 cut(s) 99, 374
TaqI TCGA 3 cut(s) 159, 576, 1087
TasI AATT 3 cut(s) 278, 556, 857
TauI GCSGC 2 cut(s) 35, 288
TfiI GAWTC 5 cut(s) 679, 764, 791, 878, 1084
Tru1I TTAA 4 cut(s) 414, 600, 758, 933
Tru9I TTAA 4 cut(s) 414, 600, 758, 933
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 5 cut(s) 29, 273, 835, 944, 1106
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 3 cut(s) 114, 287, 1137
TspGWI ACGGA 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 208
XapI RAATTY 3 cut(s) 278, 556, 857
XbaI TCTAGA 1 cut(s) 709
XceI RCATGY 2 cut(s) 333, 1117
XcmI CCANNNNNNNNNTGG 3 cut(s) 205, 266, 846
XhoI CTCGAG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 2 cut(s) 665, 710
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.