No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27020 AT5G54870 AT5G54870 |
| fragaria_vesca | FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 FvH4_3g22420 |
| malus_domestica | MD03G1205200.v1.1 MD11G1221100.v1.1 |
| prunus_persica | Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210700_v2.0.a1 Prupe.4G210800_v2.0.a1 |
| pyrus_communis | pycom03g15510 pycom11g19510 |
| rosa_chinensis | RchiOBHm_Chr5g0039091 |
| rosa_laevigata | RLG00000033892 |
| rosa_multiflora | Rmu_sc0000533.1_g000029 Rmu_ssc0000410.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00042030 |
| rosa_rugosa | Rorug05G0176400 |
| rosa_samantha | Rh5AG262800 Rh5BG267600 Rh5CG300300 Rh5DG274100 |
| rosa_wichuraiana | Rw5G024570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1766 |
| AccB1I | GGYRCC | 2 cut(s) | 221, 497 |
| AccI | GTMKAC | 2 cut(s) | 1836, 2040 |
| AccII | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| AccIII | TCCGGA | 2 cut(s) | 653, 1225 |
| AclWI | GGATC | 3 cut(s) | 878, 1310, 2077 |
| AcoI | YGGCCR | 1 cut(s) | 128 |
| AcsI | RAATTY | 2 cut(s) | 443, 1346 |
| AcuI | CTGAAG | 3 cut(s) | 789, 1872, 2028 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfaI | GTAC | 5 cut(s) | 1247, 1649, 1782, 2058, 2076 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 241, 567, 1045, 1699 |
| AflIII | ACRYGT | 1 cut(s) | 329 |
| AgsI | TTSAA | 7 cut(s) | 506, 1132, 1145, 1181, 1187, 1289, 1385 |
| AjiI | CACGTC | 1 cut(s) | 330 |
| AjnI | CCWGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| Alw21I | GWGCWC | 1 cut(s) | 402 |
| Alw26I | GTCTC | 3 cut(s) | 698, 932, 1593 |
| AlwI | GGATC | 3 cut(s) | 878, 1310, 2077 |
| Ama87I | CYCGRG | 1 cut(s) | 407 |
| Aor13HI | TCCGGA | 2 cut(s) | 653, 1225 |
| AoxI | GGCC | 6 cut(s) | 128, 945, 973, 1690, 1795, 2028 |
| ApeKI | GCWGC | 3 cut(s) | 32, 35, 1106 |
| ApoI | RAATTY | 2 cut(s) | 443, 1346 |
| AspLEI | GCGC | 3 cut(s) | 155, 224, 1597 |
| AspS9I | GGNCC | 1 cut(s) | 1796 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 800 |
| AvaI | CYCGRG | 1 cut(s) | 407 |
| BalI | TGGCCA | 1 cut(s) | 130 |
| BanI | GGYRCC | 2 cut(s) | 221, 497 |
| BauI | CACGAG | 1 cut(s) | 1267 |
| BbsI | GAAGAC | 2 cut(s) | 1719, 1851 |
| Bbv12I | GWGCWC | 1 cut(s) | 402 |
| BbvI | GCAGC | 3 cut(s) | 44, 47, 1093 |
| BccI | CCATC | 8 cut(s) | 47, 244, 540, 1247, 1415, 1537, 1856, 1979 |
| BceAI | ACGGC | 4 cut(s) | 1571, 1705, 1720, 1894 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1384, 1418 |
| BciT130I | CCWGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| BclI | TGATCA | 1 cut(s) | 1207 |
| BcoDI | GTCTC | 3 cut(s) | 698, 932, 1593 |
| BfaI | CTAG | 2 cut(s) | 2036, 2054 |
| BfmI | CTRYAG | 2 cut(s) | 747, 1020 |
| BfoI | RGCGCY | 1 cut(s) | 225 |
| BglII | AGATCT | 1 cut(s) | 1170 |
| BisI | GCNGC | 6 cut(s) | 33, 36, 945, 1107, 1399, 1559 |
| BlsI | GCNGC | 6 cut(s) | 34, 37, 946, 1108, 1400, 1560 |
| Bme1390I | CCNGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| BmeT110I | CYCGRG | 1 cut(s) | 407 |
| BmgBI | CACGTC | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 1 cut(s) | 1796 |
| BmiI | GGNNCC | 4 cut(s) | 184, 223, 499, 1500 |
| BmrFI | CCNGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| BmsI | GCATC | 4 cut(s) | 919, 1039, 1351, 1514 |
| BpiI | GAAGAC | 2 cut(s) | 1719, 1851 |
| BpmI | CTGGAG | 1 cut(s) | 1785 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1157 |
| BpuEI | CTTGAG | 1 cut(s) | 1358 |
| BsaBI | GATNNNNATC | 3 cut(s) | 381, 882, 1528 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 1593 |
| BsaJI | CCNNGG | 6 cut(s) | 617, 839, 948, 1553, 1603, 1632 |
| BsaWI | WCCGGW | 3 cut(s) | 653, 1225, 1790 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 90, 120, 679, 709, 1664, 1694 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 241, 567, 1045, 1699 |
| Bse118I | RCCGGY | 1 cut(s) | 269 |
| Bse1I | ACTGG | 1 cut(s) | 1802 |
| Bse3DI | GCAATG | 4 cut(s) | 891, 896, 1423, 2008 |
| Bse8I | GATNNNNATC | 3 cut(s) | 381, 882, 1528 |
| BseAI | TCCGGA | 2 cut(s) | 653, 1225 |
| BseBI | CCWGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| BseDI | CCNNGG | 6 cut(s) | 617, 839, 948, 1553, 1603, 1632 |
| BseJI | GATNNNNATC | 3 cut(s) | 381, 882, 1528 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 241, 567, 1045, 1699 |
| BseMI | GCAATG | 4 cut(s) | 891, 896, 1423, 2008 |
| BseMII | CTCAG | 3 cut(s) | 426, 1158, 1163 |
| BseNI | ACTGG | 1 cut(s) | 1802 |
| BseRI | GAGGAG | 2 cut(s) | 17, 155 |
| BseXI | GCAGC | 3 cut(s) | 44, 47, 1093 |
| Bsh1236I | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| BshFI | GGCC | 6 cut(s) | 130, 947, 975, 1692, 1797, 2030 |
| BshNI | GGYRCC | 2 cut(s) | 221, 497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 402 |
| BsiHKCI | CYCGRG | 1 cut(s) | 407 |
| BsiSI | CCGG | 4 cut(s) | 270, 654, 1226, 1791 |
| BslFI | GGGAC | 2 cut(s) | 178, 1439 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 241, 567, 1045, 1699 |
| BsmAI | GTCTC | 3 cut(s) | 698, 932, 1593 |
| BsmFI | GGGAC | 2 cut(s) | 178, 1439 |
| BsnI | GGCC | 6 cut(s) | 130, 947, 975, 1692, 1797, 2030 |
| Bso31I | GGTCTC | 1 cut(s) | 1593 |
| BsoBI | CYCGRG | 1 cut(s) | 407 |
| Bsp1286I | GDGCHC | 1 cut(s) | 402 |
| Bsp13I | TCCGGA | 2 cut(s) | 653, 1225 |
| Bsp1407I | TGTACA | 1 cut(s) | 1245 |
| Bsp143I | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| Bsp19I | CCATGG | 1 cut(s) | 839 |
| BspANI | GGCC | 6 cut(s) | 130, 947, 975, 1692, 1797, 2030 |
| BspCNI | CTCAG | 3 cut(s) | 427, 1159, 1162 |
| BspEI | TCCGGA | 2 cut(s) | 653, 1225 |
| BspFNI | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| BspLI | GGNNCC | 4 cut(s) | 184, 223, 499, 1500 |
| BspMAI | CTGCAG | 1 cut(s) | 751 |
| BspPI | GGATC | 3 cut(s) | 878, 1310, 2077 |
| BspQI | GCTCTTC | 1 cut(s) | 62 |
| BspT107I | GGYRCC | 2 cut(s) | 221, 497 |
| BspTNI | GGTCTC | 1 cut(s) | 1593 |
| BsrDI | GCAATG | 4 cut(s) | 891, 896, 1423, 2008 |
| BsrFI | RCCGGY | 1 cut(s) | 269 |
| BsrGI | TGTACA | 1 cut(s) | 1245 |
| BsrI | ACTGG | 1 cut(s) | 1802 |
| BssAI | RCCGGY | 1 cut(s) | 269 |
| BssECI | CCNNGG | 6 cut(s) | 617, 839, 948, 1553, 1603, 1632 |
| BssMI | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| BssNAI | GTATAC | 1 cut(s) | 2041 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssSI | CACGAG | 1 cut(s) | 1267 |
| BssT1I | CCWWGG | 2 cut(s) | 617, 839 |
| Bst1107I | GTATAC | 1 cut(s) | 2041 |
| Bst2BI | CACGAG | 1 cut(s) | 1267 |
| Bst2UI | CCWGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| Bst4CI | ACNGT | 5 cut(s) | 367, 1078, 1250, 1432, 1785 |
| Bst6I | CTCTTC | 3 cut(s) | 62, 300, 1692 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstAUI | TGTACA | 1 cut(s) | 1245 |
| BstC8I | GCNNGC | 5 cut(s) | 226, 483, 1327, 1403, 1572 |
| BstDEI | CTNAG | 6 cut(s) | 435, 675, 1149, 1157, 1167, 1566 |
| BstDSI | CCRYGG | 2 cut(s) | 839, 1553 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1697 |
| BstFNI | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| BstH2I | RGCGCY | 1 cut(s) | 225 |
| BstHHI | GCGC | 3 cut(s) | 155, 224, 1597 |
| BstKTI | GATC | 6 cut(s) | 163, 886, 1173, 1210, 1318, 2072 |
| BstMAI | GTCTC | 3 cut(s) | 698, 932, 1593 |
| BstMBI | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 219, 907, 972, 1567 |
| BstNI | CCWGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| BstNSI | RCATGY | 1 cut(s) | 1372 |
| BstSCI | CCNGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| BstSFI | CTRYAG | 2 cut(s) | 747, 1020 |
| BstUI | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| BstV1I | GCAGC | 3 cut(s) | 44, 47, 1093 |
| BstV2I | GAAGAC | 2 cut(s) | 1719, 1851 |
| BstX2I | RGATCY | 1 cut(s) | 1170 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 983 |
| BstYI | RGATCY | 1 cut(s) | 1170 |
| BstZ17I | GTATAC | 1 cut(s) | 2041 |
| BsuRI | GGCC | 6 cut(s) | 130, 947, 975, 1692, 1797, 2030 |
| BtgI | CCRYGG | 2 cut(s) | 839, 1553 |
| BtgZI | GCGATG | 1 cut(s) | 1875 |
| BtrI | CACGTC | 1 cut(s) | 330 |
| BtsI | GCAGTG | 1 cut(s) | 1532 |
| BtsIMutI | CAGTG | 4 cut(s) | 636, 730, 1255, 1532 |
| Cac8I | GCNNGC | 5 cut(s) | 226, 483, 1327, 1403, 1572 |
| CfoI | GCGC | 3 cut(s) | 155, 224, 1597 |
| Cfr10I | RCCGGY | 1 cut(s) | 269 |
| Cfr13I | GGNCC | 1 cut(s) | 1796 |
| CseI | GACGC | 1 cut(s) | 1856 |
| Csp6I | GTAC | 5 cut(s) | 1246, 1648, 1781, 2057, 2075 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 494, 529 |
| CviAII | CATG | 9 cut(s) | 126, 372, 478, 840, 967, 997, 1055, 1369, 1495 |
| CviQI | GTAC | 5 cut(s) | 1246, 1648, 1781, 2057, 2075 |
| DdeI | CTNAG | 6 cut(s) | 435, 675, 1149, 1157, 1167, 1566 |
| DinI | GGCGCC | 1 cut(s) | 223 |
| DpnI | GATC | 6 cut(s) | 162, 885, 1172, 1209, 1317, 2071 |
| DpnII | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1766 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1766 |
| EaeI | YGGCCR | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 3 cut(s) | 62, 300, 1692 |
| EarI | CTCTTC | 3 cut(s) | 62, 300, 1692 |
| EciI | GGCGGA | 2 cut(s) | 303, 1623 |
| Eco130I | CCWWGG | 2 cut(s) | 617, 839 |
| Eco31I | GGTCTC | 1 cut(s) | 1593 |
| Eco32I | GATATC | 1 cut(s) | 919 |
| Eco57I | CTGAAG | 3 cut(s) | 789, 1872, 2028 |
| Eco88I | CYCGRG | 1 cut(s) | 407 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1697 |
| EcoRII | CCWGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| EcoRV | GATATC | 1 cut(s) | 919 |
| EcoT14I | CCWWGG | 2 cut(s) | 617, 839 |
| EgeI | GGCGCC | 1 cut(s) | 223 |
| EheI | GGCGCC | 1 cut(s) | 223 |
| ErhI | CCWWGG | 2 cut(s) | 617, 839 |
| FaeI | CATG | 9 cut(s) | 129, 375, 481, 843, 970, 1000, 1058, 1372, 1498 |
| FaqI | GGGAC | 2 cut(s) | 178, 1439 |
| FatI | CATG | 9 cut(s) | 125, 371, 477, 839, 966, 996, 1054, 1368, 1494 |
| FauI | CCCGC | 5 cut(s) | 98, 387, 478, 677, 1579 |
| FauNDI | CATATG | 4 cut(s) | 585, 982, 1102, 1512 |
| FbaI | TGATCA | 1 cut(s) | 1207 |
| FblI | GTMKAC | 2 cut(s) | 1836, 2040 |
| Fnu4HI | GCNGC | 6 cut(s) | 33, 36, 945, 1107, 1399, 1559 |
| Fsp4HI | GCNGC | 6 cut(s) | 33, 36, 945, 1107, 1399, 1559 |
| FspBI | CTAG | 2 cut(s) | 2036, 2054 |
| GlaI | GCGC | 3 cut(s) | 154, 223, 1596 |
| GluI | GCNGC | 6 cut(s) | 33, 36, 945, 1107, 1399, 1559 |
| GsuI | CTGGAG | 1 cut(s) | 1785 |
| HaeII | RGCGCY | 1 cut(s) | 225 |
| HaeIII | GGCC | 6 cut(s) | 130, 947, 975, 1692, 1797, 2030 |
| HapII | CCGG | 4 cut(s) | 270, 654, 1226, 1791 |
| HgaI | GACGC | 1 cut(s) | 1856 |
| HhaI | GCGC | 3 cut(s) | 155, 224, 1597 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 9 cut(s) | 129, 375, 481, 843, 970, 1000, 1058, 1372, 1498 |
| Hin6I | GCGC | 3 cut(s) | 153, 222, 1595 |
| HinP1I | GCGC | 3 cut(s) | 153, 222, 1595 |
| HincII | GTYRAC | 1 cut(s) | 1263 |
| HindII | GTYRAC | 1 cut(s) | 1263 |
| HindIII | AAGCTT | 1 cut(s) | 1436 |
| HpaII | CCGG | 4 cut(s) | 270, 654, 1226, 1791 |
| HphI | GGTGA | 2 cut(s) | 34, 800 |
| Hpy166II | GTNNAC | 7 cut(s) | 423, 534, 1263, 1837, 2041, 2059, 2077 |
| Hpy188I | TCNGA | 8 cut(s) | 769, 883, 923, 1152, 1452, 1663, 1672, 1678 |
| Hpy188III | TCNNGA | 6 cut(s) | 654, 795, 914, 1166, 1226, 1286 |
| Hpy8I | GTNNAC | 7 cut(s) | 423, 534, 1263, 1837, 2041, 2059, 2077 |
| HpyAV | CCTTC | 7 cut(s) | 119, 512, 764, 965, 1288, 1847, 2020 |
| HpyCH4III | ACNGT | 5 cut(s) | 367, 1078, 1250, 1432, 1785 |
| HpyCH4IV | ACGT | 2 cut(s) | 329, 607 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 219, 907, 972, 1567 |
| HpyF3I | CTNAG | 6 cut(s) | 435, 675, 1149, 1157, 1167, 1566 |
| HpySE526I | ACGT | 2 cut(s) | 329, 607 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 9 cut(s) | 129, 375, 481, 843, 970, 1000, 1058, 1372, 1498 |
| HspAI | GCGC | 3 cut(s) | 153, 222, 1595 |
| KasI | GGCGCC | 1 cut(s) | 221 |
| Kpn2I | TCCGGA | 2 cut(s) | 653, 1225 |
| Ksp22I | TGATCA | 1 cut(s) | 1207 |
| Kzo9I | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| LguI | GCTCTTC | 1 cut(s) | 62 |
| LmnI | GCTCC | 6 cut(s) | 188, 397, 728, 963, 1642, 1988 |
| Lsp1109I | GCAGC | 3 cut(s) | 44, 47, 1093 |
| LweI | GCATC | 4 cut(s) | 919, 1039, 1351, 1514 |
| MaeI | CTAG | 2 cut(s) | 2036, 2054 |
| MaeII | ACGT | 2 cut(s) | 329, 607 |
| MaeIII | GTNAC | 3 cut(s) | 367, 622, 1339 |
| MalI | GATC | 6 cut(s) | 162, 885, 1172, 1209, 1317, 2071 |
| MboI | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| MboII | GAAGA | 8 cut(s) | 49, 287, 377, 830, 1709, 1724, 1763, 1856 |
| MfeI | CAATTG | 2 cut(s) | 1211, 1320 |
| MflI | RGATCY | 1 cut(s) | 1170 |
| MhlI | GDGCHC | 1 cut(s) | 402 |
| MlsI | TGGCCA | 1 cut(s) | 130 |
| MluCI | AATT | 9 cut(s) | 74, 278, 443, 1211, 1221, 1320, 1346, 1475, 1637 |
| MluNI | TGGCCA | 1 cut(s) | 130 |
| Mly113I | GGCGCC | 1 cut(s) | 222 |
| MlyI | GAGTC | 4 cut(s) | 1661, 1667, 1673, 1673 |
| MmeI | TCCRAC | 3 cut(s) | 305, 1695, 1707 |
| Mox20I | TGGCCA | 1 cut(s) | 130 |
| MroI | TCCGGA | 2 cut(s) | 653, 1225 |
| MscI | TGGCCA | 1 cut(s) | 130 |
| MseI | TTAA | 5 cut(s) | 414, 450, 758, 933, 1455 |
| MslI | CAYNNNNRTG | 2 cut(s) | 588, 1515 |
| Msp20I | TGGCCA | 1 cut(s) | 130 |
| MspA1I | CMGCKG | 1 cut(s) | 1008 |
| MspI | CCGG | 4 cut(s) | 270, 654, 1226, 1791 |
| MspR9I | CCNGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| MunI | CAATTG | 2 cut(s) | 1211, 1320 |
| MvaI | CCWGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| MvnI | CGCG | 5 cut(s) | 93, 394, 684, 1574, 1597 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 219, 907, 972, 1567 |
| NarI | GGCGCC | 1 cut(s) | 222 |
| NcoI | CCATGG | 1 cut(s) | 839 |
| NdeI | CATATG | 4 cut(s) | 585, 982, 1102, 1512 |
| NdeII | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| NlaIII | CATG | 9 cut(s) | 129, 375, 481, 843, 970, 1000, 1058, 1372, 1498 |
| NlaIV | GGNNCC | 4 cut(s) | 184, 223, 499, 1500 |
| NmeAIII | GCCGAG | 2 cut(s) | 189, 221 |
| NmuCI | GTSAC | 1 cut(s) | 367 |
| NspI | RCATGY | 1 cut(s) | 1372 |
| PaeR7I | CTCGAG | 1 cut(s) | 407 |
| PciSI | GCTCTTC | 1 cut(s) | 62 |
| PcsI | WCGNNNNNNNCGW | 7 cut(s) | 1692, 1737, 1836, 1878, 1905, 1932, 1959 |
| PfeI | GAWTC | 6 cut(s) | 679, 764, 791, 878, 1084, 1391 |
| PfoI | TCCNGGA | 1 cut(s) | 1770 |
| PkrI | GCNGC | 6 cut(s) | 34, 37, 946, 1108, 1400, 1560 |
| PleI | GAGTC | 4 cut(s) | 1660, 1667, 1672, 1673 |
| PluTI | GGCGCC | 1 cut(s) | 225 |
| PpsI | GAGTC | 4 cut(s) | 1660, 1667, 1672, 1673 |
| Psp6I | CCWGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| PspGI | CCWGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| PspN4I | GGNNCC | 4 cut(s) | 184, 223, 499, 1500 |
| PspPI | GGNCC | 1 cut(s) | 1796 |
| PspXI | VCTCGAGB | 1 cut(s) | 407 |
| PstI | CTGCAG | 1 cut(s) | 751 |
| PsuI | RGATCY | 1 cut(s) | 1170 |
| PvuII | CAGCTG | 1 cut(s) | 1008 |
| RsaI | GTAC | 5 cut(s) | 1247, 1649, 1782, 2058, 2076 |
| RsaNI | GTAC | 5 cut(s) | 1246, 1648, 1781, 2057, 2075 |
| RseI | CAYNNNNRTG | 2 cut(s) | 588, 1515 |
| SapI | GCTCTTC | 1 cut(s) | 62 |
| SaqAI | TTAA | 5 cut(s) | 414, 450, 758, 933, 1455 |
| SatI | GCNGC | 6 cut(s) | 33, 36, 945, 1107, 1399, 1559 |
| Sau3AI | GATC | 6 cut(s) | 160, 883, 1170, 1207, 1315, 2069 |
| Sau96I | GGNCC | 1 cut(s) | 1796 |
| SchI | GAGTC | 4 cut(s) | 1661, 1667, 1673, 1673 |
| ScrFI | CCNGG | 4 cut(s) | 949, 1605, 1772, 2032 |
| SduI | GDGCHC | 1 cut(s) | 402 |
| SfaNI | GCATC | 4 cut(s) | 919, 1039, 1351, 1514 |
| SfcI | CTRYAG | 2 cut(s) | 747, 1020 |
| SfoI | GGCGCC | 1 cut(s) | 223 |
| Sfr274I | CTCGAG | 1 cut(s) | 407 |
| SlaI | CTCGAG | 1 cut(s) | 407 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 588, 1515 |
| SmlI | CTYRAG | 2 cut(s) | 407, 1373 |
| SmoI | CTYRAG | 2 cut(s) | 407, 1373 |
| Sse9I | AATT | 9 cut(s) | 74, 278, 443, 1211, 1221, 1320, 1346, 1475, 1637 |
| SspDI | GGCGCC | 1 cut(s) | 221 |
| SspI | AATATT | 2 cut(s) | 565, 631 |
| SspMI | CTAG | 2 cut(s) | 2036, 2054 |
| StyD4I | CCNGG | 4 cut(s) | 947, 1603, 1770, 2030 |
| StyI | CCWWGG | 2 cut(s) | 617, 839 |
| TaaI | ACNGT | 5 cut(s) | 367, 1078, 1250, 1432, 1785 |
| TaiI | ACGT | 2 cut(s) | 332, 610 |
| TaqI | TCGA | 5 cut(s) | 159, 408, 1394, 1468, 1695 |
| TaqII | GACCGA | 1 cut(s) | 58 |
| TasI | AATT | 9 cut(s) | 74, 278, 443, 1211, 1221, 1320, 1346, 1475, 1637 |
| TatI | WGTACW | 3 cut(s) | 1245, 2056, 2074 |
| TauI | GCSGC | 3 cut(s) | 947, 1401, 1561 |
| TfiI | GAWTC | 6 cut(s) | 679, 764, 791, 878, 1084, 1391 |
| Tru1I | TTAA | 5 cut(s) | 414, 450, 758, 933, 1455 |
| Tru9I | TTAA | 5 cut(s) | 414, 450, 758, 933, 1455 |
| TscAI | CASTG | 4 cut(s) | 643, 730, 1255, 1539 |
| TseFI | GTSAC | 1 cut(s) | 367 |
| TseI | GCWGC | 3 cut(s) | 32, 35, 1106 |
| Tsp45I | GTSAC | 1 cut(s) | 367 |
| TspDTI | ATGAA | 9 cut(s) | 287, 456, 816, 1041, 1137, 1270, 1529, 1764, 2010 |
| TspGWI | ACGGA | 1 cut(s) | 1431 |
| TspRI | CASTG | 4 cut(s) | 643, 730, 1255, 1539 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1697 |
| XapI | RAATTY | 2 cut(s) | 443, 1346 |
| XceI | RCATGY | 1 cut(s) | 1372 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 846 |
| XhoI | CTCGAG | 1 cut(s) | 407 |
| XmiI | GTMKAC | 2 cut(s) | 1836, 2040 |
| XspI | CTAG | 2 cut(s) | 2036, 2054 |