Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Forward (+)

22293325 .. 22295144

Gene Structure 1820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCTTTCAATTCGCAGAAGCTTAACTCTAGCAAAAGAGCCAAAAGATTTGTTTTTGTTTTTGTGTAATCTCCGAGCTCGATGTGTATCTACAGATGACTATGATCCACCATTTTCGCCTCTCTCTAAACCCACTAAACCTCCAAAAGAGAAGAAGAAGCAGAAGACGAAGAAGCAAGACCAGTCGTCGGAGCTGGTAAATGACCTGAAGATTCCAGTGATTTCAGACCTCCCTTTCGATTTTAGGTATTCGTATTCAGAAACTAACCCGGAAATTGAACCGATTGGATTCCGTGAACCGAAACGGTTCTCTCCATTTGGACCGGGTCGATTGGACCGGAAATGGACTGGGACTACCGCACTGGCGTCGCCGGAGATTGATCAGAGTCAATGGGTGGAGGAGAGAGCAAGAGTTCTCGGCGAGACTTTGACAGAGGATGAAGTTACAGAGCTTATTGAACGGTATCGGCATAGTGACTGTACACGACAGATTAATCTCGGGAAAGGTGGTGTGACTCACAATATGATAGATGATATTCATAACCATTGGAAGAAAGCTGAGGCAGTGAGGATCAAATGCTTGGGAGTACCAACTCTTGACATGGACAACATATGTTTCCACCTCGAGGAAAAATCCGGTGGAAAGATTGTATACAGAAACATAAACATTCTAGTTTTGTACCGGGGAAGGAATTATGATCCGAAGAGTCGTCCCATCATTCCACTCATGTTATGGAAGCCTCATCCGCCAATATACCCAAGACTTGTAAAGAATGTGGCTGATGGGTTAGAATTTGAAGAGACCAAGGAGATGAGAAATCGTGGGCTTCATTCTCCTGCCTTAATGAAACTTACTAGGAATGGTGTTTATGTTAATGTCGTTGGAAGAGTGAGGGAAGAGTTTGAAACAGAAGAGATTGTGAGACTAGATTGCACTCATGTTGGGATGAGTGACTGCAAACGAATTGGTGTGAAACTAAAGGAGATGGTTCCATGTGTTCCCATATTGTTCAAAGATGAGCAGATCATACTCTGGAGAGGGAAGAGGACTGGTGAAGAAGAGCTTGTTACTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

358

Amino Acids

41.41

Weight (kDa)

8.76

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	143 - 228	2.9e-18	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	264 - 346	4.1e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	623
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	2 cut(s)	357, 746
AclWI	GGATC	3 cut(s)	98, 578, 692
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	365
AfaI	GTAC	3 cut(s)	481, 588, 680
AfiI	CCNNNNNNNGG	2 cut(s)	187, 625
AgsI	TTSAA	6 cut(s)	9, 278, 458, 797, 905, 1012
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	6 cut(s)	21, 77, 193, 451, 557, 1063
AluI	AGCT	6 cut(s)	21, 77, 193, 451, 557, 1063
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	416, 794, 916
AlwI	GGATC	3 cut(s)	98, 578, 692
Ama87I	CYCGRG	2 cut(s)	497, 623
ApoI	RAATTY	1 cut(s)	791
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	320, 334
AsuC2I	CCSGG	3 cut(s)	269, 324, 683
AsuHPI	GGTGA	1 cut(s)	1064
AvaI	CYCGRG	2 cut(s)	497, 623
AvaII	GGWCC	2 cut(s)	320, 334
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	558
BccI	CCATC	3 cut(s)	722, 776, 979
BcgI	CGANNNNNNTGC	2 cut(s)	348, 382
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	3 cut(s)	269, 324, 683
BcoDI	GTCTC	3 cut(s)	416, 794, 916
BfaI	CTAG	4 cut(s)	29, 671, 855, 926
BfmI	CTRYAG	1 cut(s)	90
Bme1390I	CCNGG	3 cut(s)	269, 324, 683
Bme18I	GGWCC	2 cut(s)	320, 334
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	497, 623
BmgT120I	GGNCC	2 cut(s)	320, 334
BmiI	GGNNCC	1 cut(s)	990
BmrFI	CCNGG	3 cut(s)	269, 324, 683
BmrI	ACTGGG	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	1054
Bpu10I	CCTNAGC	1 cut(s)	558
BpuMI	CCSGG	3 cut(s)	269, 324, 683
BsaBI	GATNNNNATC	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	2 cut(s)	682, 804
BsaWI	WCCGGW	2 cut(s)	336, 635
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 625
Bse1I	ACTGG	5 cut(s)	181, 215, 352, 366, 1054
Bse8I	GATNNNNATC	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	682, 804
BseGI	GGATG	3 cut(s)	442, 742, 951
BseJI	GATNNNNATC	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	187, 625
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	5 cut(s)	181, 215, 352, 366, 1054
BseRI	GAGGAG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	2 cut(s)	497, 623
BsiSI	CCGG	6 cut(s)	269, 323, 337, 371, 636, 682
BslFI	GGGAC	2 cut(s)	364, 696
BslI	CCNNNNNNNGG	2 cut(s)	187, 625
BsmAI	GTCTC	3 cut(s)	416, 794, 916
BsmFI	GGGAC	2 cut(s)	364, 696
Bso31I	GGTCTC	1 cut(s)	794
BsoBI	CYCGRG	2 cut(s)	497, 623
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	103, 379, 570, 697, 1023
BspACI	CCGC	2 cut(s)	357, 746
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	990
BspPI	GGATC	3 cut(s)	98, 578, 692
BspQI	GCTCTTC	1 cut(s)	1053
BspTNI	GGTCTC	1 cut(s)	794
BsrGI	TGTACA	1 cut(s)	479
BsrI	ACTGG	5 cut(s)	181, 215, 352, 366, 1054
BssECI	CCNNGG	2 cut(s)	682, 804
BssMI	GATC	5 cut(s)	103, 379, 570, 697, 1023
BssNAI	GTATAC	1 cut(s)	652
BssNI	GRCGYC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	804
Bst1107I	GTATAC	1 cut(s)	652
Bst4CI	ACNGT	3 cut(s)	306, 462, 479
Bst6I	CTCTTC	7 cut(s)	698, 792, 880, 891, 906, 1037, 1053
BstACI	GRCGYC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	479
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	442, 742, 951
BstKTI	GATC	5 cut(s)	106, 382, 573, 700, 1026
BstMAI	GTCTC	3 cut(s)	416, 794, 916
BstMBI	GATC	5 cut(s)	103, 379, 570, 697, 1023
BstMWI	GCNNNNNNNGC	1 cut(s)	745
BstSCI	CCNGG	3 cut(s)	267, 322, 681
BstSFI	CTRYAG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	170
BstZ17I	GTATAC	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	442, 742, 951
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	222, 359, 570
Cfr13I	GGNCC	2 cut(s)	320, 334
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	480, 587, 679
CviAII	CATG	4 cut(s)	601, 727, 938, 993
CviQI	GTAC	3 cut(s)	480, 587, 679
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	5 cut(s)	105, 381, 572, 699, 1025
DpnII	GATC	5 cut(s)	103, 379, 570, 697, 1023
DriI	GACNNNNNGTC	1 cut(s)	184
Eam1104I	CTCTTC	7 cut(s)	698, 792, 880, 891, 906, 1037, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	7 cut(s)	698, 792, 880, 891, 906, 1037, 1053
EciI	GGCGGA	1 cut(s)	735
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	2 cut(s)	320, 334
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	497, 623
EcoICRI	GAGCTC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	4 cut(s)	604, 730, 941, 996
FalI	AAGNNNNNCTT	1 cut(s)	1047
FaqI	GGGAC	2 cut(s)	364, 696
FatI	CATG	4 cut(s)	600, 726, 937, 992
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	651
FokI	GGATG	3 cut(s)	449, 729, 958
FriOI	GRGCYC	1 cut(s)	79
FspBI	CTAG	4 cut(s)	29, 671, 855, 926
GsuI	CTGGAG	1 cut(s)	1054
HapII	CCGG	6 cut(s)	269, 323, 337, 371, 636, 682
HgaI	GACGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	365
Hin1II	CATG	4 cut(s)	604, 730, 941, 996
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	5 cut(s)	211, 288, 385, 514, 706
HpaII	CCGG	6 cut(s)	269, 323, 337, 371, 636, 682
HphI	GGTGA	1 cut(s)	1064
Hpy166II	GTNNAC	3 cut(s)	296, 482, 652
Hpy188I	TCNGA	6 cut(s)	74, 190, 226, 259, 384, 702
Hpy188III	TCNNGA	3 cut(s)	499, 596, 1033
Hpy8I	GTNNAC	3 cut(s)	296, 482, 652
Hpy99I	CGWCG	2 cut(s)	190, 370
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	3 cut(s)	306, 462, 479
HpyCH4V	TGCA	2 cut(s)	933, 957
HpyF10VI	GCNNNNNNNGC	1 cut(s)	745
HpyF3I	CTNAG	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	365
Hsp92II	CATG	4 cut(s)	604, 730, 941, 996
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	103, 379, 570, 697, 1023
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	1 cut(s)	190
MaeI	CTAG	4 cut(s)	29, 671, 855, 926
MaeIII	GTNAC	5 cut(s)	442, 473, 511, 950, 1066
MalI	GATC	5 cut(s)	105, 381, 572, 699, 1025
MboI	GATC	5 cut(s)	103, 379, 570, 697, 1023
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	9, 273, 691, 791, 963
MlyI	GAGTC	3 cut(s)	394, 508, 715
MmeI	TCCRAC	2 cut(s)	168, 862
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	4 cut(s)	23, 492, 842, 873
MspI	CCGG	6 cut(s)	269, 323, 337, 371, 636, 682
MspR9I	CCNGG	3 cut(s)	269, 324, 683
MwoI	GCNNNNNNNGC	1 cut(s)	745
NciI	CCSGG	3 cut(s)	269, 324, 683
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	5 cut(s)	103, 379, 570, 697, 1023
NlaIII	CATG	4 cut(s)	604, 730, 941, 996
NlaIV	GGNNCC	1 cut(s)	990
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	3 cut(s)	473, 511, 950
PaeR7I	CTCGAG	1 cut(s)	623
PciSI	GCTCTTC	1 cut(s)	1053
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	211, 288
PflFI	GACNNNGTC	1 cut(s)	324
PleI	GAGTC	3 cut(s)	393, 508, 714
PpsI	GAGTC	3 cut(s)	393, 508, 714
PshBI	ATTAAT	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	990
PspPI	GGNCC	2 cut(s)	320, 334
PspXI	VCTCGAGB	1 cut(s)	623
PsyI	GACNNNGTC	1 cut(s)	324
RsaI	GTAC	3 cut(s)	481, 588, 680
RsaNI	GTAC	3 cut(s)	480, 587, 679
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	4 cut(s)	23, 492, 842, 873
Sau3AI	GATC	5 cut(s)	103, 379, 570, 697, 1023
Sau96I	GGNCC	2 cut(s)	320, 334
SchI	GAGTC	3 cut(s)	394, 508, 715
ScrFI	CCNGG	3 cut(s)	269, 324, 683
SduI	GDGCHC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	90
Sfr274I	CTCGAG	1 cut(s)	623
SinI	GGWCC	2 cut(s)	320, 334
SlaI	CTCGAG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	9, 273, 691, 791, 963
SsiI	CCGC	2 cut(s)	357, 746
SspMI	CTAG	4 cut(s)	29, 671, 855, 926
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	3 cut(s)	267, 322, 681
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	3 cut(s)	306, 462, 479
TaqI	TCGA	4 cut(s)	79, 237, 328, 624
TasI	AATT	5 cut(s)	9, 273, 691, 791, 963
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	2 cut(s)	211, 288
Tru1I	TTAA	4 cut(s)	23, 492, 842, 873
Tru9I	TTAA	4 cut(s)	23, 492, 842, 873
TscAI	CASTG	3 cut(s)	222, 366, 570
TseFI	GTSAC	3 cut(s)	473, 511, 950
Tsp45I	GTSAC	3 cut(s)	473, 511, 950
TspDTI	ATGAA	4 cut(s)	453, 527, 818, 860
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	222, 366, 570
Tth111I	GACNNNGTC	1 cut(s)	324
VpaK11BI	GGWCC	2 cut(s)	320, 334
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	1 cut(s)	791
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XhoI	CTCGAG	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	4 cut(s)	29, 671, 855, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.