Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Reverse (-)

22026236 .. 22027178

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g19480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTGAAGCAACTCTCATGGCGTCACTCACCTCACAAAACCCTAACCCTAACCCTAGACCCAATCAAACCATTCCTCTCCATCTCCCGCCTTCTGACCCAGTCTCTCTCTGACGACGCATACGAATACGACCCTCCGTTCTCTCCGGTTTCCAAACACTCAAAGCCCAAAAAGAACCTGACTCAGTCTAAAGCTCCGGACCCGAAGAATGACCCGTCCCGGCCTCTCAAATCGGACCTGCCCTTCGACTTCAGCTACTCGTATTCGGAGACCAACCCAGCGGTCGAACCTATTGCGTACCGAGAGTCCCGCAAGTTCTCTCCTTTTGGGCCCGGTCGGCTTGATCGGAAATGGACGGGCACTGTTGCACCGGCCCAGCAAGAAGTGGACTTGGACCGGGTCGCGGAGGAGAGAAAACGGGTTCTCGGAGACCCACTAACGGAGGAGGAAGCGGCGGAGCTGGTGGAACGCTACAGTCATAGTGATTGTTCTCGGCAAATCAATATGGGAAAGGGAGGAGTTACACATAACATGTTAGATGATATCCACAATCATTGGAAGCGAGCCGAGGCGGTGAGGATCAAGTGTTTGGGAGTGCCAACTATTGACATGGACAATGTTTGCTTCCACCTTGGGTGTATATGCAGGACAAGTGCGGTGGGAAGATTATTTATCGGCACATTAATGTCCTTATTTTATATCGGGGTGGAAACTATGATCCGTAGAATCGACCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

246

Amino Acids

27.83

Weight (kDa)

8.23

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	246
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	8 cut(s)	88, 281, 310, 404, 452, 455, 572, 656
AclWI	GGATC	2 cut(s)	587, 712
AcuI	CTGAAG	2 cut(s)	26, 235
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	403, 439
AflIII	ACRYGT	1 cut(s)	531
AluBI	AGCT	3 cut(s)	194, 255, 460
AluI	AGCT	3 cut(s)	194, 255, 460
Alw26I	GTCTC	3 cut(s)	108, 263, 423
AlwI	GGATC	2 cut(s)	587, 712
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	221, 329, 372
ApaI	GGGCCC	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AseI	ATTAAT	1 cut(s)	683
AspS9I	GGNCC	6 cut(s)	199, 235, 329, 330, 373, 394
AsuC2I	CCSGG	3 cut(s)	220, 333, 398
AsuHPI	GGTGA	2 cut(s)	21, 586
AvaII	GGWCC	3 cut(s)	199, 235, 394
BaeGI	GKGCMC	2 cut(s)	333, 362
BanII	GRGCYC	1 cut(s)	333
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BcnI	CCSGG	3 cut(s)	220, 333, 398
BcoDI	GTCTC	3 cut(s)	108, 263, 423
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	3 cut(s)	220, 333, 398
Bme18I	GGWCC	3 cut(s)	199, 235, 394
BmgT120I	GGNCC	6 cut(s)	199, 235, 329, 330, 373, 394
BmiI	GGNNCC	2 cut(s)	201, 331
BmrFI	CCNGG	3 cut(s)	220, 333, 398
BmrI	ACTGGG	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	94
BpuMI	CCSGG	3 cut(s)	220, 333, 398
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	2 cut(s)	263, 423
BsaJI	CCNNGG	2 cut(s)	567, 631
BsaWI	WCCGGW	2 cut(s)	145, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 439
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	100
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	567, 631
BseLI	CCNNNNNNNGG	2 cut(s)	403, 439
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	422, 458, 531
BseSI	GKGCMC	2 cut(s)	333, 362
BseYI	CCCAGC	2 cut(s)	277, 375
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	2 cut(s)	285, 337
BshFI	GGCC	3 cut(s)	223, 331, 374
BsiEI	CGRYCG	2 cut(s)	285, 337
BsiSI	CCGG	6 cut(s)	146, 197, 220, 333, 371, 397
BslFI	GGGAC	2 cut(s)	202, 292
BslI	CCNNNNNNNGG	2 cut(s)	403, 439
BsmAI	GTCTC	3 cut(s)	108, 263, 423
BsmFI	GGGAC	2 cut(s)	202, 292
BsnI	GGCC	3 cut(s)	223, 331, 374
Bso31I	GGTCTC	2 cut(s)	263, 423
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	333, 362
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	343, 579, 717
BspACI	CCGC	8 cut(s)	88, 281, 310, 404, 452, 455, 572, 656
BspANI	GGCC	3 cut(s)	223, 331, 374
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	2 cut(s)	201, 331
BspMI	ACCTGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	587, 712
BspTNI	GGTCTC	2 cut(s)	263, 423
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	567, 631
BssMI	GATC	3 cut(s)	343, 579, 717
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	631
Bst4CI	ACNGT	2 cut(s)	364, 476
BstACI	GRCGYC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	3 cut(s)	346, 582, 720
BstMAI	GTCTC	3 cut(s)	108, 263, 423
BstMBI	GATC	3 cut(s)	343, 579, 717
BstMCI	CGRYCG	2 cut(s)	285, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	218, 331, 396
BstSFI	CTRYAG	1 cut(s)	472
BstSLI	GKGCMC	2 cut(s)	333, 362
BstUI	CGCG	1 cut(s)	404
BsuRI	GGCC	3 cut(s)	223, 331, 374
BtsIMutI	CAGTG	1 cut(s)	360
BveI	ACCTGC	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	564
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	6 cut(s)	199, 235, 329, 330, 373, 394
CseI	GACGC	2 cut(s)	11, 125
Csp6I	GTAC	1 cut(s)	298
CspCI	CAANNNNNGTGG	4 cut(s)	536, 571, 639, 674
CviAII	CATG	3 cut(s)	18, 532, 610
CviJI	RGCY	9 cut(s)	166, 194, 223, 255, 331, 340, 374, 460, 566
CviKI_1	RGCY	9 cut(s)	166, 194, 223, 255, 331, 340, 374, 460, 566
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	3 cut(s)	345, 581, 719
DpnII	GATC	3 cut(s)	343, 579, 717
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	263, 423
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	3 cut(s)	199, 235, 394
Eco57I	CTGAAG	2 cut(s)	26, 235
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	3 cut(s)	21, 535, 613
FaqI	GGGAC	2 cut(s)	202, 292
FatI	CATG	3 cut(s)	17, 531, 609
FauI	CCCGC	2 cut(s)	95, 317
Fnu4HI	GCNGC	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	1 cut(s)	453
GsaI	CCCAGC	2 cut(s)	281, 379
HaeIII	GGCC	3 cut(s)	223, 331, 374
HapII	CCGG	6 cut(s)	146, 197, 220, 333, 371, 397
HgaI	GACGC	2 cut(s)	11, 125
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	21, 535, 613
HinfI	GANTC	3 cut(s)	181, 305, 726
HpaII	CCGG	6 cut(s)	146, 197, 220, 333, 371, 397
HphI	GGTGA	2 cut(s)	21, 586
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	96, 112, 235, 268, 348, 428
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	101, 253
HpyCH4III	ACNGT	2 cut(s)	364, 476
HpyCH4V	TGCA	2 cut(s)	368, 645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	21, 535, 613
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	3 cut(s)	343, 579, 717
LmnI	GCTCC	2 cut(s)	199, 457
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	23, 520
MalI	GATC	3 cut(s)	345, 581, 719
MboI	GATC	3 cut(s)	343, 579, 717
MboII	GAAGA	2 cut(s)	217, 675
MhlI	GDGCHC	2 cut(s)	333, 362
MlyI	GAGTC	2 cut(s)	175, 314
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	6 cut(s)	146, 197, 220, 333, 371, 397
MspR9I	CCNGG	3 cut(s)	220, 333, 398
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	3 cut(s)	220, 333, 398
NdeII	GATC	3 cut(s)	343, 579, 717
NlaIII	CATG	3 cut(s)	21, 535, 613
NlaIV	GGNNCC	2 cut(s)	201, 331
NmeAIII	GCCGAG	2 cut(s)	472, 592
NmuCI	GTSAC	1 cut(s)	23
NspI	RCATGY	1 cut(s)	535
PciI	ACATGT	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	726
PflFI	GACNNNGTC	3 cut(s)	100, 184, 398
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	175, 313
PpsI	GAGTC	2 cut(s)	175, 313
PscI	ACATGT	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	683
PspFI	CCCAGC	2 cut(s)	277, 375
PspN4I	GGNNCC	2 cut(s)	201, 331
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	6 cut(s)	199, 235, 329, 330, 373, 394
PsyI	GACNNNGTC	3 cut(s)	100, 184, 398
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	343, 579, 717
Sau96I	GGNCC	6 cut(s)	199, 235, 329, 330, 373, 394
SchI	GAGTC	2 cut(s)	175, 314
ScrFI	CCNGG	3 cut(s)	220, 333, 398
SduI	GDGCHC	2 cut(s)	333, 362
SetI	ASST	9 cut(s)	34, 180, 196, 240, 257, 292, 462, 633, 735
SfcI	CTRYAG	1 cut(s)	472
SinI	GGWCC	3 cut(s)	199, 235, 394
SmiMI	CAYNNNNRTG	1 cut(s)	683
SsiI	CCGC	8 cut(s)	88, 281, 310, 404, 452, 455, 572, 656
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	3 cut(s)	218, 331, 396
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	2 cut(s)	364, 476
TaqI	TCGA	3 cut(s)	246, 285, 729
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	726
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspGWI	ACGGA	3 cut(s)	126, 455, 710
TspRI	CASTG	1 cut(s)	367
Tth111I	GACNNNGTC	3 cut(s)	100, 184, 398
VpaK11BI	GGWCC	3 cut(s)	199, 235, 394
VspI	ATTAAT	1 cut(s)	683
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.