Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Forward (+)

13181598 .. 13185934

Gene Structure 4337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G211400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCTTAAGCTACTCCCATGGCGTCCCTCACCTCACAAAACCCTAACCCTAGACCCGGCCAAACCCTTTAGCTCCCTCTCTCGCTTTCTCAGCCATTCTCTCTCCGAAGACCAATACGAAGACGACCCTCCTTTCTCTCCAGTTTCCAAACCCCCAAAGCCCAAGAAGAACAAGACACAGAATAAAGATCCAGATACGAAGAATGAACCGACCCGGCCTCTAAAATCGGACCTACCCTTCGACTTCAGCTACTCGTACTCAGAAACAAACCCGAAGGTCGAACCTATTGCGTTCCGGGAGTCGCCAAAGTTCTCTCCTTTTGGGCCAGGTCGGCTTGATAGGAAATGGACCGGCACTGTTGCCCCGACCCAACAAGAAGTGGACTTGAACCGGGTCGCGGAGGAGAGGATACGGGTTCTTGGAGACCCACTAACGGAGGAGGAAGTGGCTAAGCTGGTGGAACGGTACCGTCATAGTGATTGTGCTCGGCAAATCAACATGGGAAAGGGAGGAGTTACTCATAACATGTTAGATGACATCCATAACCATTGGAAGCGGGCAGAAGCTGTGAGGATCAAGTGTTTGGGAGTGCCAACTCTTGACATGGACAATGTTTGCTTCCACCTTGAGGACAAGTCTGGTGGGAAGATTGTCTACCAGCACATTAATGTCCTCATTTTATACCGGGGTCGAAACTATGATCCGAAGAATCGACCCGTAATACCTGTAATGCTCTGGAAACCGTACACTCCGATATATCCAAAGCTTGTGAAGAATGTTGCTGATGGCTTGACATTTGAAGAAACAAAGGAATTAAGAAACAGAGGACTAAATTCCCCACCTGTTATGAAACTTACTAGAAATGGTGTGTATGTGAATGTTGTGGATAGAATCAGGGAGGCTTTCAAGACTGAGGAGGTAGTGAGACTAGACTGCACACATGTTGGTACCAGTGATTGCAAAAGGATAGGCGTGAAATTAAGGGATCTGGTACCTTGCATCCCTCTTTTGTTCAAGGATGAGCAGATTGTACTCTGGAGGGGAAAGAGAGATCAAGAACAAGACTCCAAGTGCAGGGATAGAAGTGAAAAGTTTGCAGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

369

Amino Acids

42.38

Weight (kDa)

9.12

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	465, 947, 991
AccB1I	GGYRCC	3 cut(s)	465, 947, 991
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	398, 556
AclWI	GGATC	4 cut(s)	182, 581, 695, 993
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	6 cut(s)	257, 467, 746, 949, 993, 1032
AfiI	CCNNNNNNNGG	5 cut(s)	55, 397, 433, 628, 1074
AflII	CTTAAG	1 cut(s)	5
AflIII	ACRYGT	2 cut(s)	525, 940
AgsI	TTSAA	4 cut(s)	388, 800, 907, 1015
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	6 cut(s)	10, 72, 249, 454, 566, 766
AluI	AGCT	6 cut(s)	10, 72, 249, 454, 566, 766
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	417, 919
AlwI	GGATC	4 cut(s)	182, 581, 695, 993
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	3 cut(s)	57, 215, 323
ApoI	RAATTY	1 cut(s)	832
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AseI	ATTAAT	1 cut(s)	666
Asp718I	GGTACC	3 cut(s)	465, 947, 991
AspS9I	GGNCC	3 cut(s)	229, 323, 348
AsuC2I	CCSGG	5 cut(s)	56, 214, 296, 392, 686
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	229, 348
BanI	GGYRCC	3 cut(s)	465, 947, 991
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	2 cut(s)	114, 126
Bbv12I	GWGCWC	1 cut(s)	487
BccI	CCATC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	402
BcnI	CCSGG	5 cut(s)	56, 214, 296, 392, 686
BcoDI	GTCTC	2 cut(s)	417, 919
BfaI	CTAG	3 cut(s)	50, 858, 929
BfrI	CTTAAG	1 cut(s)	5
BfuI	GTATCC	1 cut(s)	402
BglI	GCCNNNNNGGC	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	450
Bme1390I	CCNGG	6 cut(s)	56, 214, 296, 327, 392, 686
Bme18I	GGWCC	2 cut(s)	229, 348
BmgT120I	GGNCC	3 cut(s)	229, 323, 348
BmiI	GGNNCC	3 cut(s)	467, 949, 993
BmrFI	CCNGG	6 cut(s)	56, 214, 296, 327, 392, 686
BmsI	GCATC	2 cut(s)	1008, 1090
BpiI	GAAGAC	2 cut(s)	114, 126
BpmI	CTGGAG	2 cut(s)	123, 1057
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	5 cut(s)	56, 214, 296, 392, 686
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	17, 685
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 397, 433, 628, 1074
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	140, 951
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	17, 685
BseGI	GGATG	3 cut(s)	537, 999, 1024
BseLI	CCNNNNNNNGG	5 cut(s)	55, 397, 433, 628, 1074
BseMII	CTCAG	3 cut(s)	103, 273, 903
BseNI	ACTGG	2 cut(s)	140, 951
BseRI	GAGGAG	4 cut(s)	416, 452, 525, 929
BsgI	GTGCAG	2 cut(s)	919, 1093
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	3 cut(s)	59, 217, 325
BshNI	GGYRCC	3 cut(s)	465, 947, 991
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	6 cut(s)	56, 214, 295, 351, 391, 685
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	5 cut(s)	55, 397, 433, 628, 1074
BsmAI	GTCTC	2 cut(s)	417, 919
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	3 cut(s)	59, 217, 325
Bso31I	GGTCTC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	5 cut(s)	187, 573, 700, 985, 1051
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	2 cut(s)	398, 556
BspANI	GGCC	3 cut(s)	59, 217, 325
BspCNI	CTCAG	3 cut(s)	102, 272, 904
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	467, 949, 993
BspPI	GGATC	4 cut(s)	182, 581, 695, 993
BspT107I	GGYRCC	3 cut(s)	465, 947, 991
BspTI	CTTAAG	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	140, 951
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	17, 685
BssMI	GATC	5 cut(s)	187, 573, 700, 985, 1051
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	4 cut(s)	358, 465, 470, 744
BstACI	GRCGYC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	89, 259, 450, 912
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	537, 999, 1024
BstFNI	CGCG	1 cut(s)	398
BstKTI	GATC	5 cut(s)	190, 576, 703, 988, 1054
BstMAI	GTCTC	2 cut(s)	417, 919
BstMBI	GATC	5 cut(s)	187, 573, 700, 985, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 331
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	529, 944
BstSCI	CCNGG	6 cut(s)	54, 212, 294, 325, 390, 684
BstUI	CGCG	1 cut(s)	398
BstV2I	GAAGAC	2 cut(s)	114, 126
BstX2I	RGATCY	2 cut(s)	187, 985
BstYI	RGATCY	2 cut(s)	187, 985
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	59, 217, 325
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	537, 999, 1024
BtsIMutI	CAGTG	2 cut(s)	354, 958
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	229, 323, 348
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	6 cut(s)	256, 466, 745, 948, 992, 1031
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	5 cut(s)	18, 499, 526, 604, 941
CviQI	GTAC	6 cut(s)	256, 466, 745, 948, 992, 1031
DdeI	CTNAG	4 cut(s)	89, 259, 450, 912
DpnI	GATC	5 cut(s)	189, 575, 702, 987, 1053
DpnII	GATC	5 cut(s)	187, 573, 700, 985, 1051
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	229, 348
Eco57I	CTGAAG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	5 cut(s)	21, 502, 529, 607, 944
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	5 cut(s)	17, 498, 525, 603, 940
FauI	CCCGC	1 cut(s)	549
FblI	GTMKAC	1 cut(s)	654
FokI	GGATG	3 cut(s)	524, 986, 1031
FspBI	CTAG	3 cut(s)	50, 858, 929
GsuI	CTGGAG	2 cut(s)	123, 1057
HaeIII	GGCC	3 cut(s)	59, 217, 325
HapII	CCGG	6 cut(s)	56, 214, 295, 351, 391, 685
HgaI	GACGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	21, 502, 529, 607, 944
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	4 cut(s)	299, 709, 891, 1064
HpaII	CCGG	6 cut(s)	56, 214, 295, 351, 391, 685
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	382, 655, 747
Hpy188I	TCNGA	5 cut(s)	106, 229, 262, 705, 753
Hpy188III	TCNNGA	6 cut(s)	191, 599, 736, 907, 1036, 1055
Hpy8I	GTNNAC	3 cut(s)	382, 655, 747
HpyAV	CCTTC	2 cut(s)	247, 268
HpyCH4III	ACNGT	4 cut(s)	358, 465, 470, 744
HpyCH4V	TGCA	5 cut(s)	936, 960, 999, 1074, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 331
HpyF3I	CTNAG	4 cut(s)	89, 259, 450, 912
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	21, 502, 529, 607, 944
KpnI	GGTACC	3 cut(s)	469, 951, 995
Kzo9I	GATC	5 cut(s)	187, 573, 700, 985, 1051
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	2 cut(s)	1008, 1090
MaeI	CTAG	3 cut(s)	50, 858, 929
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	189, 575, 702, 987, 1053
MboI	GATC	5 cut(s)	187, 573, 700, 985, 1051
MboII	GAAGA	8 cut(s)	119, 131, 178, 211, 658, 718, 784, 812
MflI	RGATCY	2 cut(s)	187, 985
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	3 cut(s)	812, 832, 977
MlyI	GAGTC	2 cut(s)	308, 1058
MseI	TTAA	5 cut(s)	6, 666, 815, 980, 1105
MslI	CAYNNNNRTG	1 cut(s)	666
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	6 cut(s)	56, 214, 295, 351, 391, 685
MspR9I	CCNGG	6 cut(s)	56, 214, 296, 327, 392, 686
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	90, 331
NciI	CCSGG	5 cut(s)	56, 214, 296, 392, 686
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	187, 573, 700, 985, 1051
NlaIII	CATG	5 cut(s)	21, 502, 529, 607, 944
NlaIV	GGNNCC	3 cut(s)	467, 949, 993
NmeAIII	GCCGAG	1 cut(s)	466
NspI	RCATGY	2 cut(s)	529, 944
PciI	ACATGT	2 cut(s)	525, 940
PfeI	GAWTC	2 cut(s)	709, 891
PfoI	TCCNGGA	1 cut(s)	294
PleI	GAGTC	2 cut(s)	307, 1058
PpsI	GAGTC	2 cut(s)	307, 1058
PscI	ACATGT	2 cut(s)	525, 940
PshBI	ATTAAT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	467, 949, 993
PspPI	GGNCC	3 cut(s)	229, 323, 348
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	187, 985
RsaI	GTAC	6 cut(s)	257, 467, 746, 949, 993, 1032
RsaNI	GTAC	6 cut(s)	256, 466, 745, 948, 992, 1031
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	6, 666, 815, 980, 1105
Sau3AI	GATC	5 cut(s)	187, 573, 700, 985, 1051
Sau96I	GGNCC	3 cut(s)	229, 323, 348
SchI	GAGTC	2 cut(s)	308, 1058
ScrFI	CCNGG	6 cut(s)	56, 214, 296, 327, 392, 686
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	1008, 1090
SinI	GGWCC	2 cut(s)	229, 348
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	2 cut(s)	5, 626
SmoI	CTYRAG	2 cut(s)	5, 626
Sse9I	AATT	3 cut(s)	812, 832, 977
SsiI	CCGC	2 cut(s)	398, 556
SspMI	CTAG	3 cut(s)	50, 858, 929
StyD4I	CCNGG	6 cut(s)	54, 212, 294, 325, 390, 684
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	4 cut(s)	358, 465, 470, 744
TaqI	TCGA	4 cut(s)	240, 279, 691, 712
TasI	AATT	3 cut(s)	812, 832, 977
TatI	WGTACW	1 cut(s)	1030
TfiI	GAWTC	2 cut(s)	709, 891
Tru1I	TTAA	5 cut(s)	6, 666, 815, 980, 1105
Tru9I	TTAA	5 cut(s)	6, 666, 815, 980, 1105
TscAI	CASTG	2 cut(s)	361, 958
TspDTI	ATGAA	2 cut(s)	219, 863
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	361, 958
Vha464I	CTTAAG	1 cut(s)	5
VpaK11BI	GGWCC	2 cut(s)	229, 348
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	2 cut(s)	529, 944
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	3 cut(s)	50, 858, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.