Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Forward (+)

33894305 .. 33896415

Gene Structure 2111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTAAGCAAACCAAACCAAACCAAACTAAACACTCTGTTCCAAATGCTCAAGCTTCTCTCTTCACCTCATAAAACCCAAACCCTAAACCCTAACAAACCATTCCTCTTCCTCTCTCGCCTCCTCAGCCAATCTCTCTCTAGCAATCCCTACGATTACGACCCTCCGTTTTCTCCAGCTTCCAAACCCCAAAACCCCAAAAACAAAAAGACCCAGAATGCTGACCCGAACAAAGACCCGACCACCCAGCCTCTCAAATCGGACCTTCCCTTCGACTTCAGCTACTCCTACTCGGAGACCCCGTCGGCCGAACCCATTTCTTTCCGGGAGTCCCCAAAGTTCTCTCCTTTCGGGCCGGGACGGCTTGATAGGAAATGGACCGGGACGGTCGCCCCGGCCCAACAGGAAGTGGACTTGAACCGGCTGGCCCAGGAGAGAAAACGGGTTCTCGGAGACCCGCTTTCGGAGGAGGAAGTGGCCGAGCTGGTGGAACGGTATCGGCATAGTGATTGCTCTCGCCAAATCAATTTGGGAAAGGGAGGAGTTACTCATAACATGTTAGATGACATCCACAACCATTGGAAGCGGGCTGAAGCTGTGAGGATCAAGTGTTTGGGGGTGCCAACTCTTGATATGGACAATGTTTGCTTCCACCTTGAGGACAAGTCTGGAGGGGCAATTATCTACCGGCATATTAATGTCCTTATTTTATACCGTGGTCGAAATTATGATCCGAAAAATCAGCCAGTAATACCTGTAATGCTCTGGAAGCCCTATCCTCCGATTTATCCAAAGCTTGTGAAGAATGTTGCTGATGGCTTGACATTTGAAGAGACGAAGGAATTACGAAACAGAGGACTAAATTCTCTCCCTCTCATGAAACTTACTAGAAATGGTGTGTATGTGAATGTTGTGGACAGAGTAAAGGAGGCCTTCAAGACTGAAGAGGTAGTGAGACTAGACTGCACCCATGTTGGTACCAGTGATTGCAAAAGAATAGGTGCAAAATTGAGGGACCTTGCACCTTGCATCCCCCTTTTGTTCAAAGATGAGCAGATTATACTGTGGAGGGGGAAACAAGATCAAGAACAAGACTCCCAAGTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

369

Amino Acids

42.17

Weight (kDa)

9.18

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	154 - 239	2.3e-17	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	274 - 357	1.4e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	977
AccB1I	GGYRCC	2 cut(s)	619, 977
AciI	CCGC	2 cut(s)	458, 586
AclWI	GGATC	2 cut(s)	611, 725
AcoI	YGGCCR	2 cut(s)	306, 477
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	3 cut(s)	262, 612, 963
AfaI	GTAC	1 cut(s)	979
AfiI	CCNNNNNNNGG	2 cut(s)	463, 658
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	4 cut(s)	418, 830, 937, 1045
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	6 cut(s)	55, 179, 282, 484, 596, 796
AluI	AGCT	6 cut(s)	55, 179, 282, 484, 596, 796
Alw26I	GTCTC	4 cut(s)	290, 447, 827, 949
AlwI	GGATC	2 cut(s)	611, 725
AoxI	GGCC	6 cut(s)	306, 353, 396, 426, 477, 930
ApoI	RAATTY	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AseI	ATTAAT	1 cut(s)	696
Asp718I	GGTACC	1 cut(s)	977
AspS9I	GGNCC	6 cut(s)	262, 353, 378, 397, 427, 1015
AsuC2I	CCSGG	4 cut(s)	326, 357, 382, 395
AsuHPI	GGTGA	1 cut(s)	57
AvaII	GGWCC	3 cut(s)	262, 378, 1015
BanI	GGYRCC	2 cut(s)	619, 977
BbvCI	CCTCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	809
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	4 cut(s)	326, 357, 382, 395
BcoDI	GTCTC	4 cut(s)	290, 447, 827, 949
BfaI	CTAG	3 cut(s)	141, 888, 959
BglI	GCCNNNNNGGC	1 cut(s)	361
Bme1390I	CCNGG	5 cut(s)	326, 357, 382, 395, 431
Bme18I	GGWCC	3 cut(s)	262, 378, 1015
BmgT120I	GGNCC	6 cut(s)	262, 353, 378, 397, 427, 1015
BmiI	GGNNCC	3 cut(s)	621, 979, 1016
BmrFI	CCNGG	5 cut(s)	326, 357, 382, 395, 431
BmsI	GCATC	1 cut(s)	1038
BpmI	CTGGAG	2 cut(s)	159, 690
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	35, 677
BpuMI	CCSGG	4 cut(s)	326, 357, 382, 395
BsaI	GGTCTC	2 cut(s)	290, 447
BsaJI	CCNNGG	3 cut(s)	393, 429, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 658
Bse118I	RCCGGY	2 cut(s)	420, 687
Bse1I	ACTGG	2 cut(s)	746, 981
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	3 cut(s)	393, 429, 715
BseGI	GGATG	2 cut(s)	567, 1029
BseLI	CCNNNNNNNGG	2 cut(s)	463, 658
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	746, 981
BseRI	GAGGAG	3 cut(s)	113, 482, 555
BseX3I	CGGCCG	1 cut(s)	306
BseYI	CCCAGC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	949
Bsh1285I	CGRYCG	2 cut(s)	309, 390
BshFI	GGCC	6 cut(s)	308, 355, 398, 428, 479, 932
BshNI	GGYRCC	2 cut(s)	619, 977
BsiEI	CGRYCG	2 cut(s)	309, 390
BsiSI	CCGG	6 cut(s)	325, 356, 381, 395, 421, 688
BslFI	GGGAC	4 cut(s)	316, 372, 397, 1028
BslI	CCNNNNNNNGG	2 cut(s)	463, 658
BsmAI	GTCTC	4 cut(s)	290, 447, 827, 949
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	4 cut(s)	316, 372, 397, 1028
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	6 cut(s)	308, 355, 398, 428, 479, 932
Bso31I	GGTCTC	2 cut(s)	290, 447
Bsp143I	GATC	3 cut(s)	603, 730, 1081
BspACI	CCGC	2 cut(s)	458, 586
BspANI	GGCC	6 cut(s)	308, 355, 398, 428, 479, 932
BspCNI	CTCAG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	876
BspLI	GGNNCC	3 cut(s)	621, 979, 1016
BspPI	GGATC	2 cut(s)	611, 725
BspT107I	GGYRCC	2 cut(s)	619, 977
BspTNI	GGTCTC	2 cut(s)	290, 447
BsrFI	RCCGGY	2 cut(s)	420, 687
BsrI	ACTGG	2 cut(s)	746, 981
BssAI	RCCGGY	2 cut(s)	420, 687
BssECI	CCNNGG	3 cut(s)	393, 429, 715
BssMI	GATC	3 cut(s)	603, 730, 1081
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	4 cut(s)	388, 495, 716, 1065
Bst6I	CTCTTC	4 cut(s)	67, 113, 825, 939
BstC8I	GCNNGC	2 cut(s)	426, 588
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	715
BstF5I	GGATG	2 cut(s)	567, 1029
BstKTI	GATC	3 cut(s)	606, 733, 1084
BstMAI	GTCTC	4 cut(s)	290, 447, 827, 949
BstMBI	GATC	3 cut(s)	603, 730, 1081
BstMCI	CGRYCG	2 cut(s)	309, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 361, 769
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	5 cut(s)	324, 355, 380, 393, 429
BstZI	CGGCCG	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	308, 355, 398, 428, 479, 932
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	567, 1029
BtsIMutI	CAGTG	1 cut(s)	988
Cac8I	GCNNGC	2 cut(s)	426, 588
CciI	TCATGA	1 cut(s)	876
Cfr10I	RCCGGY	2 cut(s)	420, 687
Cfr13I	GGNCC	6 cut(s)	262, 353, 378, 397, 427, 1015
Csp6I	GTAC	1 cut(s)	978
CspCI	CAANNNNNGTGG	2 cut(s)	560, 595
CviAII	CATG	3 cut(s)	556, 877, 971
CviQI	GTAC	1 cut(s)	978
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	605, 732, 1083
DpnII	GATC	3 cut(s)	603, 730, 1081
EaeI	YGGCCR	2 cut(s)	306, 477
EagI	CGGCCG	1 cut(s)	306
Eam1104I	CTCTTC	4 cut(s)	67, 113, 825, 939
EarI	CTCTTC	4 cut(s)	67, 113, 825, 939
EclXI	CGGCCG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	932
Eco31I	GGTCTC	2 cut(s)	290, 447
Eco47I	GGWCC	3 cut(s)	262, 378, 1015
Eco52I	CGGCCG	1 cut(s)	306
Eco57I	CTGAAG	3 cut(s)	262, 612, 963
EcoO109I	RGGNCCY	1 cut(s)	1015
EcoRII	CCWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	3 cut(s)	559, 880, 974
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	4 cut(s)	316, 372, 397, 1028
FatI	CATG	3 cut(s)	555, 876, 970
FauI	CCCGC	2 cut(s)	465, 579
FokI	GGATG	2 cut(s)	554, 1016
FspBI	CTAG	3 cut(s)	141, 888, 959
GsaI	CCCAGC	1 cut(s)	250
GsuI	CTGGAG	2 cut(s)	159, 690
HaeIII	GGCC	6 cut(s)	308, 355, 398, 428, 479, 932
HapII	CCGG	6 cut(s)	325, 356, 381, 395, 421, 688
Hin1II	CATG	3 cut(s)	559, 880, 974
HindIII	AAGCTT	2 cut(s)	53, 794
HinfI	GANTC	2 cut(s)	329, 1094
HpaII	CCGG	6 cut(s)	325, 356, 381, 395, 421, 688
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	2 cut(s)	412, 916
Hpy188I	TCNGA	6 cut(s)	262, 295, 452, 466, 735, 783
Hpy188III	TCNNGA	6 cut(s)	629, 669, 766, 877, 937, 1085
Hpy8I	GTNNAC	2 cut(s)	412, 916
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	4 cut(s)	275, 280, 832, 943
HpyCH4III	ACNGT	4 cut(s)	388, 495, 716, 1065
HpyCH4V	TGCA	5 cut(s)	966, 990, 1004, 1022, 1029
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 361, 769
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	559, 880, 974
KpnI	GGTACC	1 cut(s)	981
Kzo9I	GATC	3 cut(s)	603, 730, 1081
LweI	GCATC	1 cut(s)	1038
MaeI	CTAG	3 cut(s)	141, 888, 959
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	605, 732, 1083
MboI	GATC	3 cut(s)	603, 730, 1081
MboII	GAAGA	5 cut(s)	54, 100, 814, 842, 956
MluCI	AATT	6 cut(s)	526, 678, 724, 842, 862, 1007
MlyI	GAGTC	2 cut(s)	338, 1088
MseI	TTAA	2 cut(s)	5, 696
MslI	CAYNNNNRTG	1 cut(s)	696
MspI	CCGG	6 cut(s)	325, 356, 381, 395, 421, 688
MspR9I	CCNGG	5 cut(s)	326, 357, 382, 395, 431
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	126, 361, 769
NciI	CCSGG	4 cut(s)	326, 357, 382, 395
NdeII	GATC	3 cut(s)	603, 730, 1081
NlaIII	CATG	3 cut(s)	559, 880, 974
NlaIV	GGNNCC	3 cut(s)	621, 979, 1016
NmeAIII	GCCGAG	1 cut(s)	505
NspI	RCATGY	1 cut(s)	559
PagI	TCATGA	1 cut(s)	876
PceI	AGGCCT	1 cut(s)	932
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	223
PflFI	GACNNNGTC	1 cut(s)	301
PfoI	TCCNGGA	1 cut(s)	324
PleI	GAGTC	2 cut(s)	337, 1088
PpsI	GAGTC	2 cut(s)	337, 1088
PpuMI	RGGWCCY	1 cut(s)	1015
PscI	ACATGT	1 cut(s)	555
PshBI	ATTAAT	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	1015
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	621, 979, 1016
PspPI	GGNCC	6 cut(s)	262, 353, 378, 397, 427, 1015
PspPPI	RGGWCCY	1 cut(s)	1015
PsyI	GACNNNGTC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	5, 696
Sau3AI	GATC	3 cut(s)	603, 730, 1081
Sau96I	GGNCC	6 cut(s)	262, 353, 378, 397, 427, 1015
SchI	GAGTC	2 cut(s)	338, 1088
ScrFI	CCNGG	5 cut(s)	326, 357, 382, 395, 431
SfaNI	GCATC	1 cut(s)	1038
SinI	GGWCC	3 cut(s)	262, 378, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	50, 656
SmoI	CTYRAG	2 cut(s)	50, 656
Sse9I	AATT	6 cut(s)	526, 678, 724, 842, 862, 1007
SseBI	AGGCCT	1 cut(s)	932
SsiI	CCGC	2 cut(s)	458, 586
SspMI	CTAG	3 cut(s)	141, 888, 959
StuI	AGGCCT	1 cut(s)	932
StyD4I	CCNGG	5 cut(s)	324, 355, 380, 393, 429
TaaI	ACNGT	4 cut(s)	388, 495, 716, 1065
TaqI	TCGA	2 cut(s)	273, 721
TasI	AATT	6 cut(s)	526, 678, 724, 842, 862, 1007
Tru1I	TTAA	2 cut(s)	5, 696
Tru9I	TTAA	2 cut(s)	5, 696
TscAI	CASTG	1 cut(s)	988
TspDTI	ATGAA	1 cut(s)	893
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	988
Tth111I	GACNNNGTC	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	262, 378, 1015
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	1 cut(s)	862
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	3 cut(s)	141, 888, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.