Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000533.1

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Reverse (-)

29305 .. 30978

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000533.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgctgaagcttctctcctcagctcataaaacccaaaccctaaaccctaacaaaccattcctcttcctctctcgcctcctcagccaatctctctctagcaatccctacgattacgaccctccgttttctccagcttccaaaccccaaaaccccaaaaacaaaaagacccagaatgctgacccgaacaaagacccgaccacccagcctctcaaatcggaccttcccttcgacttcagctactcctactcggagaccccgtcggccgaacccatttctttccgggagtcgccaaagttttctcctttcgggccgggacggcttgataggaaatggaccgggacggtcgccccggcccaacaggaagtggacctgaaccggctggcccaggagagaaaacgggttctcggagacccgctttcggaggaggaagtggctgagctggtggaacggtatcggcatagtgattgctctcgccaaatcaatttgggaaagggaggagttactcataacatgttagatgacatccacaaccattggaagcgggctgaagctgtgaggatcaagtgtttgggggtgccaactcttgatatggacaatgtttgcttccaccttgaggacaagtctggaggggcaattatctaccgacatattaatgtccttattttataccgtggacgaaattatgatccgaacaatcgggcagtaatacctgtaatgctctggaagccctatcctccgatttatccaaagcttgtgaagaatgttgctgatggcttgacatttgaagagacgaaggaattacgaaacagaggactaaattccctccctctcatgaaacttactagaaatggtgtgtatgtgaatgttgtggacagagtaaaggagtcctttaagactgaagaggtggtgagactagactgcacccatgttggtaccagtgattgcaaaagaataggtgcaaaattgagggaccttgcaccttgcatcccccttttgttcaaagatgagcagattatactgtggagggggaaacaagatcaagaacaagactccaagtgcattgatggatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

357

Amino Acids

40.63

Weight (kDa)

8.9

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	932
AccB1I	GGYRCC	2 cut(s)	574, 932
AciI	CCGC	2 cut(s)	413, 541
AclWI	GGATC	2 cut(s)	566, 680
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	4 cut(s)	26, 217, 567, 918
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	2 cut(s)	418, 613
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	785, 1000
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	7 cut(s)	10, 23, 134, 237, 439, 551, 751
AluI	AGCT	7 cut(s)	10, 23, 134, 237, 439, 551, 751
Alw26I	GTCTC	4 cut(s)	245, 402, 782, 904
AlwI	GGATC	2 cut(s)	566, 680
AoxI	GGCC	4 cut(s)	261, 308, 351, 381
ApoI	RAATTY	1 cut(s)	817
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	932
AspS9I	GGNCC	7 cut(s)	217, 308, 333, 352, 367, 382, 970
AsuC2I	CCSGG	4 cut(s)	281, 312, 337, 350
AsuHPI	GGTGA	1 cut(s)	919
AvaII	GGWCC	4 cut(s)	217, 333, 367, 970
BanI	GGYRCC	2 cut(s)	574, 932
BbvCI	CCTCAGC	2 cut(s)	19, 80
BccI	CCATC	2 cut(s)	764, 1058
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	386
BcnI	CCSGG	4 cut(s)	281, 312, 337, 350
BcoDI	GTCTC	4 cut(s)	245, 402, 782, 904
BfaI	CTAG	3 cut(s)	96, 843, 914
BglI	GCCNNNNNGGC	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	435
Bme1390I	CCNGG	5 cut(s)	281, 312, 337, 350, 386
Bme18I	GGWCC	4 cut(s)	217, 333, 367, 970
BmgT120I	GGNCC	7 cut(s)	217, 308, 333, 352, 367, 382, 970
BmiI	GGNNCC	3 cut(s)	576, 934, 971
BmrFI	CCNGG	5 cut(s)	281, 312, 337, 350, 386
BmsI	GCATC	1 cut(s)	993
BpmI	CTGGAG	2 cut(s)	114, 645
Bpu10I	CCTNAGC	2 cut(s)	19, 80
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	4 cut(s)	281, 312, 337, 350
BsaI	GGTCTC	2 cut(s)	245, 402
BsaJI	CCNNGG	3 cut(s)	348, 384, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 613
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	348, 384, 670
BseGI	GGATG	2 cut(s)	522, 984
BseLI	CCNNNNNNNGG	2 cut(s)	418, 613
BseMII	CTCAG	3 cut(s)	33, 94, 426
BseNI	ACTGG	1 cut(s)	936
BseRI	GAGGAG	4 cut(s)	7, 68, 437, 510
BseX3I	CGGCCG	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	904
Bsh1285I	CGRYCG	2 cut(s)	264, 345
BshFI	GGCC	4 cut(s)	263, 310, 353, 383
BshNI	GGYRCC	2 cut(s)	574, 932
BsiEI	CGRYCG	2 cut(s)	264, 345
BsiSI	CCGG	5 cut(s)	280, 311, 336, 350, 376
BslFI	GGGAC	3 cut(s)	327, 352, 983
BslI	CCNNNNNNNGG	2 cut(s)	418, 613
BsmAI	GTCTC	4 cut(s)	245, 402, 782, 904
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	3 cut(s)	327, 352, 983
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	263, 310, 353, 383
Bso31I	GGTCTC	2 cut(s)	245, 402
Bsp143I	GATC	4 cut(s)	558, 685, 1036, 1067
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	2 cut(s)	413, 541
BspANI	GGCC	4 cut(s)	263, 310, 353, 383
BspCNI	CTCAG	3 cut(s)	32, 93, 427
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	576, 934, 971
BspPI	GGATC	2 cut(s)	566, 680
BspT107I	GGYRCC	2 cut(s)	574, 932
BspTNI	GGTCTC	2 cut(s)	245, 402
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	348, 384, 670
BssMI	GATC	4 cut(s)	558, 685, 1036, 1067
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	4 cut(s)	343, 450, 671, 1020
Bst6I	CTCTTC	3 cut(s)	68, 780, 894
BstC8I	GCNNGC	2 cut(s)	381, 543
BstDEI	CTNAG	3 cut(s)	19, 80, 435
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	2 cut(s)	522, 984
BstKTI	GATC	4 cut(s)	561, 688, 1039, 1070
BstMAI	GTCTC	4 cut(s)	245, 402, 782, 904
BstMBI	GATC	4 cut(s)	558, 685, 1036, 1067
BstMCI	CGRYCG	2 cut(s)	264, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	279, 310, 335, 348, 384
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	4 cut(s)	263, 310, 353, 383
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	522, 984
BtsIMutI	CAGTG	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	381, 543
CciI	TCATGA	1 cut(s)	831
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	7 cut(s)	217, 308, 333, 352, 367, 382, 970
Csp6I	GTAC	1 cut(s)	933
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	3 cut(s)	511, 832, 926
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	3 cut(s)	19, 80, 435
DpnI	GATC	4 cut(s)	560, 687, 1038, 1069
DpnII	GATC	4 cut(s)	558, 685, 1036, 1067
EaeI	YGGCCR	1 cut(s)	261
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	68, 780, 894
EarI	CTCTTC	3 cut(s)	68, 780, 894
EclXI	CGGCCG	1 cut(s)	261
Eco31I	GGTCTC	2 cut(s)	245, 402
Eco47I	GGWCC	4 cut(s)	217, 333, 367, 970
Eco52I	CGGCCG	1 cut(s)	261
Eco57I	CTGAAG	4 cut(s)	26, 217, 567, 918
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	384
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	3 cut(s)	514, 835, 929
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	3 cut(s)	327, 352, 983
FatI	CATG	3 cut(s)	510, 831, 925
FauI	CCCGC	2 cut(s)	420, 534
FokI	GGATG	2 cut(s)	509, 971
FspBI	CTAG	3 cut(s)	96, 843, 914
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	114, 645
HaeIII	GGCC	4 cut(s)	263, 310, 353, 383
HapII	CCGG	5 cut(s)	280, 311, 336, 350, 376
Hin1II	CATG	3 cut(s)	514, 835, 929
HindIII	AAGCTT	2 cut(s)	8, 749
HinfI	GANTC	3 cut(s)	284, 884, 1049
HpaII	CCGG	5 cut(s)	280, 311, 336, 350, 376
HphI	GGTGA	1 cut(s)	919
Hpy166II	GTNNAC	3 cut(s)	367, 674, 871
Hpy188I	TCNGA	6 cut(s)	217, 250, 407, 421, 690, 738
Hpy188III	TCNNGA	5 cut(s)	584, 624, 721, 832, 1040
Hpy8I	GTNNAC	3 cut(s)	367, 674, 871
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	230, 235, 787
HpyCH4III	ACNGT	4 cut(s)	343, 450, 671, 1020
HpyCH4V	TGCA	6 cut(s)	921, 945, 959, 977, 984, 1059
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
HpyF3I	CTNAG	3 cut(s)	19, 80, 435
Hsp92II	CATG	3 cut(s)	514, 835, 929
KpnI	GGTACC	1 cut(s)	936
Kzo9I	GATC	4 cut(s)	558, 685, 1036, 1067
LweI	GCATC	1 cut(s)	993
MaeI	CTAG	3 cut(s)	96, 843, 914
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	560, 687, 1038, 1069
MboI	GATC	4 cut(s)	558, 685, 1036, 1067
MboII	GAAGA	4 cut(s)	55, 769, 797, 911
MluCI	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
MlyI	GAGTC	3 cut(s)	293, 893, 1043
MseI	TTAA	2 cut(s)	651, 891
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	5 cut(s)	280, 311, 336, 350, 376
MspR9I	CCNGG	5 cut(s)	281, 312, 337, 350, 386
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
NciI	CCSGG	4 cut(s)	281, 312, 337, 350
NdeII	GATC	4 cut(s)	558, 685, 1036, 1067
NlaIII	CATG	3 cut(s)	514, 835, 929
NlaIV	GGNNCC	3 cut(s)	576, 934, 971
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	831
PciI	ACATGT	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PctI	GAATGC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	279
PleI	GAGTC	3 cut(s)	292, 892, 1043
PpsI	GAGTC	3 cut(s)	292, 892, 1043
PpuMI	RGGWCCY	1 cut(s)	970
PscI	ACATGT	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	576, 934, 971
PspPI	GGNCC	7 cut(s)	217, 308, 333, 352, 367, 382, 970
PspPPI	RGGWCCY	1 cut(s)	970
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	651, 891
Sau3AI	GATC	4 cut(s)	558, 685, 1036, 1067
Sau96I	GGNCC	7 cut(s)	217, 308, 333, 352, 367, 382, 970
SchI	GAGTC	3 cut(s)	293, 893, 1043
ScrFI	CCNGG	5 cut(s)	281, 312, 337, 350, 386
SfaNI	GCATC	1 cut(s)	993
SinI	GGWCC	4 cut(s)	217, 333, 367, 970
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
SsiI	CCGC	2 cut(s)	413, 541
SspMI	CTAG	3 cut(s)	96, 843, 914
StyD4I	CCNGG	5 cut(s)	279, 310, 335, 348, 384
TaaI	ACNGT	4 cut(s)	343, 450, 671, 1020
TaqI	TCGA	1 cut(s)	228
TasI	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
Tru1I	TTAA	2 cut(s)	651, 891
Tru9I	TTAA	2 cut(s)	651, 891
TscAI	CASTG	1 cut(s)	943
TspDTI	ATGAA	1 cut(s)	848
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	4 cut(s)	217, 333, 367, 970
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	3 cut(s)	96, 843, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.