Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Forward (+)

33859871 .. 33861552

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTCAAGCTTCTCTCCTCAGCTCATAAAACCCAAACCCTAAACCCTAACAAACCATTCCTCTTCCTCTCTCGCCTCCTCAGCCAATCTCTCTCTAGCAATCCCTACGATTACGACCCTCCGTTTTCTCCAGCTTCCAGACCCCAAAACCCCAAAAACAAAAAGACCCAGAATGCTGACCCGAACAAAGACCCGACCACCCAGCCTCTCAAATCGGACCTTCCCTTCGACTTCAGCTATTCCTACTCCGAGACCCCGTCGGCCGAACCCATTTCTTTCCGGGAGTCGCCAAAGTTCTCTCCTTTCGGGCCGGGACGGCTTGATAGGAAATGGACCGGGACGGTCGCCCCGGCCCAACAGGAAGTGGACTTGAACCGGCTGGCCCAGGAGAGAAAACGGGTTCTCGGAGACCCGCTTACGGAGGAGGAAGTGGCTGAGCTGGTGGAACGGTATCGGCATAGTGATTGCTCTCGCCAAATCAATTTGGGAAAGGGAGGAGTTACTCATAACATGTTAGATGATATCCACAACCATTGGAAGCGGGCTGAAGCTGTGAGGATCAAGTGTTTGGGGGTGCCAACTCTTGATATGGACAATGTTTGCTTCCACCTTGAGGACAAGTCTGGAGGGGCAATTATCTACCGGCATATTAATGTCCTTATTTTATACCGCGGTCGAAATTATGATCCGAACAATCGGCCAGTAATACCTGTAATGCTCTGGAAGCCCTATCCTCCGATTTATCCAAAGCTTGTGAAGAATGTTGCTGATGGCTTGACATTTGAAGAGACGAAGGAATTACGAAACAGAGGACTAAATTCCCTCCCTCTCATGAAACTTACTAGAAATGGTGTGTATGTGAATGTTGTGGACAGAGTAAAGGAGGCCTTCAAGACTGAAGAGGTAGTGAGACTAGACTGCACCCATGTTGGTACCAGTGATTGCAAAAGAATAGGTGCAAAATTGAGGGACCTTGCACCTTGCATCCCCCTTTTGTTCAAAGATGAGCAGATTATACTGTGGAGGGGGAAACAAGATCAAGAACAAGACTCCAAGTGGTCGAGTTGGAGTCCGCGTGATAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

363

Amino Acids

41.45

Weight (kDa)

9.13

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	139 - 224	9.8e-18	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	259 - 342	1.4e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	932
AccB1I	GGYRCC	2 cut(s)	574, 932
AccII	CGCG	2 cut(s)	672, 1075
AciI	CCGC	5 cut(s)	413, 541, 670, 672, 1073
AclWI	GGATC	2 cut(s)	566, 680
AcoI	YGGCCR	2 cut(s)	261, 698
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	3 cut(s)	217, 567, 918
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	2 cut(s)	418, 613
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	373, 785, 892, 1000
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	7 cut(s)	10, 23, 134, 237, 439, 551, 751
AluI	AGCT	7 cut(s)	10, 23, 134, 237, 439, 551, 751
Alw26I	GTCTC	4 cut(s)	245, 402, 782, 904
AlwI	GGATC	2 cut(s)	566, 680
AoxI	GGCC	6 cut(s)	261, 308, 351, 381, 698, 885
ApoI	RAATTY	1 cut(s)	817
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	932
AspS9I	GGNCC	6 cut(s)	217, 308, 333, 352, 382, 970
AsuC2I	CCSGG	4 cut(s)	281, 312, 337, 350
AvaII	GGWCC	3 cut(s)	217, 333, 970
BanI	GGYRCC	2 cut(s)	574, 932
BbvCI	CCTCAGC	2 cut(s)	19, 80
BccI	CCATC	1 cut(s)	764
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	386
BcnI	CCSGG	4 cut(s)	281, 312, 337, 350
BcoDI	GTCTC	4 cut(s)	245, 402, 782, 904
BfaI	CTAG	3 cut(s)	96, 843, 914
BglI	GCCNNNNNGGC	1 cut(s)	316
BlpI	GCTNAGC	1 cut(s)	435
Bme1390I	CCNGG	5 cut(s)	281, 312, 337, 350, 386
Bme18I	GGWCC	3 cut(s)	217, 333, 970
BmgT120I	GGNCC	6 cut(s)	217, 308, 333, 352, 382, 970
BmiI	GGNNCC	3 cut(s)	576, 934, 971
BmrFI	CCNGG	5 cut(s)	281, 312, 337, 350, 386
BmsI	GCATC	1 cut(s)	993
BpmI	CTGGAG	2 cut(s)	114, 645
Bpu10I	CCTNAGC	2 cut(s)	19, 80
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	4 cut(s)	281, 312, 337, 350
BsaI	GGTCTC	2 cut(s)	245, 402
BsaJI	CCNNGG	3 cut(s)	348, 384, 670
BsaXI	ACNNNNNCTCC	1 cut(s)	1060
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 613
Bse118I	RCCGGY	2 cut(s)	375, 642
Bse1I	ACTGG	2 cut(s)	701, 936
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	3 cut(s)	348, 384, 670
BseGI	GGATG	1 cut(s)	984
BseLI	CCNNNNNNNGG	2 cut(s)	418, 613
BseMII	CTCAG	3 cut(s)	33, 94, 426
BseNI	ACTGG	2 cut(s)	701, 936
BseRI	GAGGAG	4 cut(s)	7, 68, 437, 510
BseX3I	CGGCCG	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	904
Bsh1236I	CGCG	2 cut(s)	672, 1075
Bsh1285I	CGRYCG	3 cut(s)	264, 345, 676
BshFI	GGCC	6 cut(s)	263, 310, 353, 383, 700, 887
BshNI	GGYRCC	2 cut(s)	574, 932
BsiEI	CGRYCG	3 cut(s)	264, 345, 676
BsiSI	CCGG	6 cut(s)	280, 311, 336, 350, 376, 643
BslFI	GGGAC	3 cut(s)	327, 352, 983
BslI	CCNNNNNNNGG	2 cut(s)	418, 613
BsmAI	GTCTC	4 cut(s)	245, 402, 782, 904
BsmBI	CGTCTC	1 cut(s)	782
BsmFI	GGGAC	3 cut(s)	327, 352, 983
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	6 cut(s)	263, 310, 353, 383, 700, 887
Bso31I	GGTCTC	2 cut(s)	245, 402
Bsp143I	GATC	4 cut(s)	558, 685, 1036, 1082
Bsp1720I	GCTNAGC	1 cut(s)	435
BspACI	CCGC	5 cut(s)	413, 541, 670, 672, 1073
BspANI	GGCC	6 cut(s)	263, 310, 353, 383, 700, 887
BspCNI	CTCAG	3 cut(s)	32, 93, 427
BspFNI	CGCG	2 cut(s)	672, 1075
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	576, 934, 971
BspPI	GGATC	2 cut(s)	566, 680
BspT107I	GGYRCC	2 cut(s)	574, 932
BspTNI	GGTCTC	2 cut(s)	245, 402
BsrFI	RCCGGY	2 cut(s)	375, 642
BsrI	ACTGG	2 cut(s)	701, 936
BssAI	RCCGGY	2 cut(s)	375, 642
BssECI	CCNNGG	3 cut(s)	348, 384, 670
BssMI	GATC	4 cut(s)	558, 685, 1036, 1082
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	3 cut(s)	343, 450, 1020
Bst6I	CTCTTC	3 cut(s)	68, 780, 894
BstC8I	GCNNGC	2 cut(s)	381, 543
BstDEI	CTNAG	3 cut(s)	19, 80, 435
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	1 cut(s)	984
BstFNI	CGCG	2 cut(s)	672, 1075
BstKTI	GATC	4 cut(s)	561, 688, 1039, 1085
BstMAI	GTCTC	4 cut(s)	245, 402, 782, 904
BstMBI	GATC	4 cut(s)	558, 685, 1036, 1082
BstMCI	CGRYCG	3 cut(s)	264, 345, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	279, 310, 335, 348, 384
BstUI	CGCG	2 cut(s)	672, 1075
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	6 cut(s)	263, 310, 353, 383, 700, 887
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	984
BtsIMutI	CAGTG	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	381, 543
CciI	TCATGA	1 cut(s)	831
Cfr10I	RCCGGY	2 cut(s)	375, 642
Cfr13I	GGNCC	6 cut(s)	217, 308, 333, 352, 382, 970
Cfr42I	CCGCGG	1 cut(s)	673
Csp6I	GTAC	1 cut(s)	933
CspCI	CAANNNNNGTGG	2 cut(s)	515, 550
CviAII	CATG	3 cut(s)	511, 832, 926
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	3 cut(s)	19, 80, 435
DpnI	GATC	4 cut(s)	560, 687, 1038, 1084
DpnII	GATC	4 cut(s)	558, 685, 1036, 1082
EaeI	YGGCCR	2 cut(s)	261, 698
EagI	CGGCCG	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	68, 780, 894
EarI	CTCTTC	3 cut(s)	68, 780, 894
EclXI	CGGCCG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	887
Eco31I	GGTCTC	2 cut(s)	245, 402
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	3 cut(s)	217, 333, 970
Eco52I	CGGCCG	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	217, 567, 918
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	782
FaeI	CATG	3 cut(s)	514, 835, 929
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	3 cut(s)	327, 352, 983
FatI	CATG	3 cut(s)	510, 831, 925
FauI	CCCGC	2 cut(s)	420, 534
FokI	GGATG	1 cut(s)	971
FspBI	CTAG	3 cut(s)	96, 843, 914
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	114, 645
HaeIII	GGCC	6 cut(s)	263, 310, 353, 383, 700, 887
HapII	CCGG	6 cut(s)	280, 311, 336, 350, 376, 643
Hin1II	CATG	3 cut(s)	514, 835, 929
HindIII	AAGCTT	2 cut(s)	8, 749
HinfI	GANTC	3 cut(s)	284, 1049, 1069
HpaII	CCGG	6 cut(s)	280, 311, 336, 350, 376, 643
Hpy166II	GTNNAC	2 cut(s)	367, 871
Hpy188I	TCNGA	5 cut(s)	217, 250, 407, 690, 738
Hpy188III	TCNNGA	7 cut(s)	138, 584, 624, 721, 832, 892, 1040
Hpy8I	GTNNAC	2 cut(s)	367, 871
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	4 cut(s)	230, 235, 787, 898
HpyCH4III	ACNGT	3 cut(s)	343, 450, 1020
HpyCH4V	TGCA	5 cut(s)	921, 945, 959, 977, 984
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
HpyF3I	CTNAG	3 cut(s)	19, 80, 435
Hsp92II	CATG	3 cut(s)	514, 835, 929
KpnI	GGTACC	1 cut(s)	936
KspI	CCGCGG	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	558, 685, 1036, 1082
LweI	GCATC	1 cut(s)	993
MaeI	CTAG	3 cut(s)	96, 843, 914
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	560, 687, 1038, 1084
MboI	GATC	4 cut(s)	558, 685, 1036, 1082
MboII	GAAGA	4 cut(s)	55, 769, 797, 911
MluCI	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
MlyI	GAGTC	3 cut(s)	293, 1043, 1078
MmeI	TCCRAC	1 cut(s)	1046
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	672
MspI	CCGG	6 cut(s)	280, 311, 336, 350, 376, 643
MspR9I	CCNGG	5 cut(s)	281, 312, 337, 350, 386
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	2 cut(s)	672, 1075
MwoI	GCNNNNNNNGC	3 cut(s)	81, 316, 724
NciI	CCSGG	4 cut(s)	281, 312, 337, 350
NdeII	GATC	4 cut(s)	558, 685, 1036, 1082
NlaIII	CATG	3 cut(s)	514, 835, 929
NlaIV	GGNNCC	3 cut(s)	576, 934, 971
NspI	RCATGY	1 cut(s)	514
PagI	TCATGA	1 cut(s)	831
PceI	AGGCCT	1 cut(s)	887
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	279
PleI	GAGTC	3 cut(s)	292, 1043, 1077
PpsI	GAGTC	3 cut(s)	292, 1043, 1077
PpuMI	RGGWCCY	1 cut(s)	970
PscI	ACATGT	1 cut(s)	510
PshBI	ATTAAT	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	970
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	3 cut(s)	576, 934, 971
PspPI	GGNCC	6 cut(s)	217, 308, 333, 352, 382, 970
PspPPI	RGGWCCY	1 cut(s)	970
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
RseI	CAYNNNNRTG	1 cut(s)	651
SacII	CCGCGG	1 cut(s)	673
SaqAI	TTAA	1 cut(s)	651
Sau3AI	GATC	4 cut(s)	558, 685, 1036, 1082
Sau96I	GGNCC	6 cut(s)	217, 308, 333, 352, 382, 970
SchI	GAGTC	3 cut(s)	293, 1043, 1078
ScrFI	CCNGG	5 cut(s)	281, 312, 337, 350, 386
SfaNI	GCATC	1 cut(s)	993
Sfr303I	CCGCGG	1 cut(s)	673
SgrBI	CCGCGG	1 cut(s)	673
SinI	GGWCC	3 cut(s)	217, 333, 970
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	5, 611
SmoI	CTYRAG	2 cut(s)	5, 611
Sse9I	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
SseBI	AGGCCT	1 cut(s)	887
SsiI	CCGC	5 cut(s)	413, 541, 670, 672, 1073
SspMI	CTAG	3 cut(s)	96, 843, 914
StuI	AGGCCT	1 cut(s)	887
StyD4I	CCNGG	5 cut(s)	279, 310, 335, 348, 384
TaaI	ACNGT	3 cut(s)	343, 450, 1020
TaqI	TCGA	3 cut(s)	228, 676, 1061
TasI	AATT	6 cut(s)	481, 633, 679, 797, 817, 962
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	943
TspDTI	ATGAA	1 cut(s)	848
TspGWI	ACGGA	2 cut(s)	111, 434
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	256
VpaK11BI	GGWCC	3 cut(s)	217, 333, 970
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	514
XspI	CTAG	3 cut(s)	96, 843, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.