Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003621

Physical Location & Seq

Genomic Coordinates Reverse (-)

27858025 .. 27859867

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1204000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCTGAAGCTACTTTCATGGCGTCCCTTACCTCACAAAACCCTAACCCTAGACCCGACCAAACCATTCCTCTCCCTCTCCCGCCTTCTCAGTCAATCCCTCATCGAAGACCCATATGAATACGACCCTCCGTTCTCTCCGGTTTCCAAACCCCCAAAGCCCAAGAAAACCAAAACCCAGGATAAAGCTCCAGACCCGAAGAACGACCCGACCCGTCCTCTCAAATCGGACCTGCCCTTCGACTTCAGCTACTCGTATTCGGAAACCAACCCGGCGGTCAAACCTATTGCGTTCCGGGAGTCGCCCAAGTTCTCTCCTTTCGGACCCGGTCGGCTTGATCGGAAGTGGACCGGGACTGTTGCCGCGGTACAACAAGAAGTGGACTTGGACCGGGTTGCGGAGGAGAAAAAACGGGTTCTCGGAGACCCGCTAACGGAGGAGGAAGTGGCGGAGCTGGTGGAACGGTACCGTCATAGTGATTGCGCCCGGCAAATCAATATGGGAAAGGGAGGAGTTACACATAACATGTTAGATGATATCCACAACCACTGGAAGCGAGCCGAAGCGGTGAGGATCAAGTGTTTGGGAGTGCCAACTCTTGACATGGACAATGTTTACTTCCACCTTGAGGACAAGTCCGGTGGGAAGATTATTTACCGGCATATTAATGTCCTCATTTTATACCGGGGTCGAAACTATGATCCGAAGAATCGACCAGTAATACCTGTAATGCTCTGGAAGCCGTATCCTCCGATATATCCAAGGCTTGTAAAGAATGTTGCTGACGGCTTGACATTTGAAGAAACGAAGGAGTTAAGAAACATAGGACTAAACTGTTTACCTCTGATGAAGCTGACGAGAAATGGTGTGTATGTGAATGTTGTGGATAGAGTTAGGGAGACCTTCAATACTGAAGAGGTAGTGAGACTAGACTGCACCCATGTTGGTACCAGCGATTGCAAAAGGATAGGCGTGAAATTAAGGGATCTAGTACCTTGCATCCCTCTTTTGTTCAAGGATGAGCAGATTATACTCTGGAGGGGGAAGAGGGATCAAAGGCAAGACTCCGAGTGCACAGATAGTAGTAAAATGTCCGCAGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

369

Amino Acids

42.27

Weight (kDa)

8.97

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	144 - 229	6.4e-17	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	264 - 347	2.3e-11	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54890
fragaria_vesca	FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500 FvH4_3g22500
malus_domestica	MD03G1204000.v1.1
prunus_persica	Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1 Prupe.4G211400_v2.0.a1
pyrus_communis	pycom11g19480
rosa_chinensis	RchiOBHm_Chr5g0039151
rosa_laevigata	RLG00000033898
rosa_multiflora	Rmu_sc0000533.1_g000007 Rmu_ssc0000410.1_g000045
rosa_roxburghii	Rroxscaffold_1G00040420
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263500 Rh5BG268400 Rh5CG301200 Rh5DG276200
rosa_wichuraiana	Rw5G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
Acc65I	GGTACC	2 cut(s)	465, 947
AccB1I	GGYRCC	2 cut(s)	465, 947
AccII	CGCG	1 cut(s)	365
AciI	CCGC	9 cut(s)	82, 275, 363, 365, 398, 428, 449, 566, 1095
AclWI	GGATC	4 cut(s)	581, 695, 993, 1059
AcuI	CTGAAG	3 cut(s)	26, 229, 933
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	4 cut(s)	369, 467, 949, 993
AfiI	CCNNNNNNNGG	3 cut(s)	397, 433, 628
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	800, 907, 1015
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	10, 188, 249, 454, 853
AluI	AGCT	5 cut(s)	10, 188, 249, 454, 853
Alw21I	GWGCWC	1 cut(s)	1076
Alw26I	GTCTC	3 cut(s)	417, 893, 919
Alw44I	GTGCAC	1 cut(s)	1072
AlwI	GGATC	4 cut(s)	581, 695, 993, 1059
ApaLI	GTGCAC	1 cut(s)	1072
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AseI	ATTAAT	1 cut(s)	666
Asp718I	GGTACC	2 cut(s)	465, 947
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	4 cut(s)	229, 323, 348, 388
AsuC2I	CCSGG	7 cut(s)	272, 296, 327, 352, 392, 487, 686
AsuHPI	GGTGA	1 cut(s)	580
AvaII	GGWCC	4 cut(s)	229, 323, 348, 388
BaeGI	GKGCMC	1 cut(s)	1076
BanI	GGYRCC	2 cut(s)	465, 947
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	1076
BceAI	ACGGC	2 cut(s)	727, 802
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	756
BcnI	CCSGG	7 cut(s)	272, 296, 327, 352, 392, 487, 686
BcoDI	GTCTC	3 cut(s)	417, 893, 919
BfaI	CTAG	3 cut(s)	50, 929, 989
BfuAI	ACCTGC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	8 cut(s)	179, 272, 296, 327, 352, 392, 487, 686
Bme18I	GGWCC	4 cut(s)	229, 323, 348, 388
BmgT120I	GGNCC	4 cut(s)	229, 323, 348, 388
BmiI	GGNNCC	3 cut(s)	325, 467, 949
BmrFI	CCNGG	8 cut(s)	179, 272, 296, 327, 352, 392, 487, 686
BmsI	GCATC	2 cut(s)	1008, 1090
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	2 cut(s)	174, 1057
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	7 cut(s)	272, 296, 327, 352, 392, 487, 686
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	2 cut(s)	417, 893
BsaJI	CCNNGG	4 cut(s)	177, 363, 685, 761
BsaWI	WCCGGW	2 cut(s)	139, 638
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 433, 628
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	2 cut(s)	554, 716
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	177, 363, 685, 761
BseGI	GGATG	2 cut(s)	999, 1024
BseLI	CCNNNNNNNGG	3 cut(s)	397, 433, 628
BseMII	CTCAG	1 cut(s)	103
BseNI	ACTGG	2 cut(s)	554, 716
BseRI	GAGGAG	3 cut(s)	416, 452, 525
BseSI	GKGCMC	1 cut(s)	1076
BsgI	GTGCAG	1 cut(s)	919
Bsh1236I	CGCG	1 cut(s)	365
Bsh1285I	CGRYCG	1 cut(s)	331
BshNI	GGYRCC	2 cut(s)	465, 947
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	1076
BslFI	GGGAC	2 cut(s)	9, 367
BslI	CCNNNNNNNGG	3 cut(s)	397, 433, 628
BsmAI	GTCTC	3 cut(s)	417, 893, 919
BsmFI	GGGAC	2 cut(s)	9, 367
Bso31I	GGTCTC	2 cut(s)	417, 893
Bsp1286I	GDGCHC	1 cut(s)	1076
Bsp143I	GATC	5 cut(s)	337, 573, 700, 985, 1051
BspACI	CCGC	9 cut(s)	82, 275, 363, 365, 398, 428, 449, 566, 1095
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	3 cut(s)	325, 467, 949
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	4 cut(s)	581, 695, 993, 1059
BspT107I	GGYRCC	2 cut(s)	465, 947
BspTNI	GGTCTC	2 cut(s)	417, 893
BsrFI	RCCGGY	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	554, 716
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	4 cut(s)	177, 363, 685, 761
BssMI	GATC	5 cut(s)	337, 573, 700, 985, 1051
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	4 cut(s)	358, 465, 470, 836
Bst6I	CTCTTC	2 cut(s)	909, 1040
BstACI	GRCGYC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	999, 1024
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	5 cut(s)	340, 576, 703, 988, 1054
BstMAI	GTCTC	3 cut(s)	417, 893, 919
BstMBI	GATC	5 cut(s)	337, 573, 700, 985, 1051
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	8 cut(s)	177, 270, 294, 325, 350, 390, 485, 684
BstSLI	GKGCMC	1 cut(s)	1076
BstUI	CGCG	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BsuI	GTATCC	1 cut(s)	756
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	999, 1024
BtsIMutI	CAGTG	1 cut(s)	547
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	657
Cfr13I	GGNCC	4 cut(s)	229, 323, 348, 388
Cfr42I	CCGCGG	1 cut(s)	366
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	368, 466, 948, 992
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	4 cut(s)	18, 526, 604, 941
CviQI	GTAC	4 cut(s)	368, 466, 948, 992
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	5 cut(s)	339, 575, 702, 987, 1053
DpnII	GATC	5 cut(s)	337, 573, 700, 985, 1051
Eam1104I	CTCTTC	2 cut(s)	909, 1040
EarI	CTCTTC	2 cut(s)	909, 1040
EciI	GGCGGA	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	761
Eco31I	GGTCTC	2 cut(s)	417, 893
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	4 cut(s)	229, 323, 348, 388
Eco57I	CTGAAG	3 cut(s)	26, 229, 933
EcoRII	CCWGG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	4 cut(s)	21, 529, 607, 944
FaqI	GGGAC	2 cut(s)	9, 367
FatI	CATG	4 cut(s)	17, 525, 603, 940
FauI	CCCGC	2 cut(s)	89, 435
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	2 cut(s)	986, 1031
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	3 cut(s)	50, 929, 989
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	174, 1057
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	4 cut(s)	21, 529, 607, 944
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HinfI	GANTC	3 cut(s)	299, 709, 1064
HphI	GGTGA	1 cut(s)	580
Hpy166II	GTNNAC	5 cut(s)	348, 382, 616, 839, 1074
Hpy188I	TCNGA	9 cut(s)	229, 262, 323, 342, 422, 705, 753, 846, 1069
Hpy188III	TCNNGA	4 cut(s)	191, 599, 736, 1036
Hpy8I	GTNNAC	5 cut(s)	348, 382, 616, 839, 1074
HpyAV	CCTTC	4 cut(s)	95, 247, 802, 913
HpyCH4III	ACNGT	4 cut(s)	358, 465, 470, 836
HpyCH4V	TGCA	4 cut(s)	936, 960, 999, 1074
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	21, 529, 607, 944
HspAI	GCGC	1 cut(s)	483
KpnI	GGTACC	2 cut(s)	469, 951
KspI	CCGCGG	1 cut(s)	366
Kzo9I	GATC	5 cut(s)	337, 573, 700, 985, 1051
LmnI	GCTCC	2 cut(s)	193, 451
LweI	GCATC	2 cut(s)	1008, 1090
MaeI	CTAG	3 cut(s)	50, 929, 989
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	339, 575, 702, 987, 1053
MboI	GATC	5 cut(s)	337, 573, 700, 985, 1051
MboII	GAAGA	7 cut(s)	119, 211, 658, 718, 812, 926, 1057
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	1 cut(s)	1076
MluCI	AATT	1 cut(s)	977
MlyI	GAGTC	2 cut(s)	308, 1058
MseI	TTAA	4 cut(s)	666, 815, 980, 1105
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	8 cut(s)	179, 272, 296, 327, 352, 392, 487, 686
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	739
NciI	CCSGG	7 cut(s)	272, 296, 327, 352, 392, 487, 686
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	5 cut(s)	337, 573, 700, 985, 1051
NlaIII	CATG	4 cut(s)	21, 529, 607, 944
NlaIV	GGNNCC	3 cut(s)	325, 467, 949
NspI	RCATGY	1 cut(s)	529
PciI	ACATGT	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	709
PflFI	GACNNNGTC	1 cut(s)	327
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	2 cut(s)	307, 1058
PpsI	GAGTC	2 cut(s)	307, 1058
PscI	ACATGT	1 cut(s)	525
PshBI	ATTAAT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	325, 467, 949
PspPI	GGNCC	4 cut(s)	229, 323, 348, 388
PsuI	RGATCY	1 cut(s)	985
PsyI	GACNNNGTC	1 cut(s)	327
RsaI	GTAC	4 cut(s)	369, 467, 949, 993
RsaNI	GTAC	4 cut(s)	368, 466, 948, 992
RseI	CAYNNNNRTG	1 cut(s)	666
SacII	CCGCGG	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	666, 815, 980, 1105
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	5 cut(s)	337, 573, 700, 985, 1051
Sau96I	GGNCC	4 cut(s)	229, 323, 348, 388
SchI	GAGTC	2 cut(s)	308, 1058
ScrFI	CCNGG	8 cut(s)	179, 272, 296, 327, 352, 392, 487, 686
SduI	GDGCHC	1 cut(s)	1076
SfaNI	GCATC	2 cut(s)	1008, 1090
Sfr303I	CCGCGG	1 cut(s)	366
SgrBI	CCGCGG	1 cut(s)	366
SinI	GGWCC	4 cut(s)	229, 323, 348, 388
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	1 cut(s)	977
SsiI	CCGC	9 cut(s)	82, 275, 363, 365, 398, 428, 449, 566, 1095
SspMI	CTAG	3 cut(s)	50, 929, 989
StyD4I	CCNGG	8 cut(s)	177, 270, 294, 325, 350, 390, 485, 684
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	4 cut(s)	358, 465, 470, 836
TaqI	TCGA	4 cut(s)	105, 240, 691, 712
TasI	AATT	1 cut(s)	977
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	4 cut(s)	666, 815, 980, 1105
Tru9I	TTAA	4 cut(s)	666, 815, 980, 1105
TscAI	CASTG	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	6, 132, 863
TspGWI	ACGGA	2 cut(s)	120, 449
TspRI	CASTG	1 cut(s)	554
Tth111I	GACNNNGTC	1 cut(s)	327
VneI	GTGCAC	1 cut(s)	1072
VpaK11BI	GGWCC	4 cut(s)	229, 323, 348, 388
VspI	ATTAAT	1 cut(s)	666
XceI	RCATGY	1 cut(s)	529
XspI	CTAG	3 cut(s)	50, 929, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.