Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010665

Physical Location & Seq

Genomic Coordinates Forward (+)

22416578 .. 22418990

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCAGACCTAGACAAGCAAATAGAGCAGCTTAAACGCTGCGAGGCTTTGAAGGAATCAGAAGTGAAGGCTCTTTGTCTTAAAGCTATGGAGATTCTAGTTGAAGAGAGCAATGTTCAAAGAGTCGATGCTCCTGTCACTATATGTGGCGACATTCATGGACAGTTCTATGACATGAAAGAGCTTTTCAAAGTTGGGGGTGATTGCCCTAAGACCAATTATTTGTTTCTTGGAGATTTTGTTGACCGAGGTTTTTATTCGGTTGAGACATTTCTACTTCTTCTAGCTCTCAAGGTTAGATATCCAGACCGTATAACTCTCATTAGAGGGAACCACGAGAGCCGGCAGATTACGCAGGTATATGGATTTTATGATGAGTGTCTGCGTAAATATGGCTCTGTAAATGTTTGGAGATACTGCACAGATATCTTTGACTACTTGAGTCTTTCAGCTCTTGTCGAGAACAAGATATTTTGTGTTCATGGAGGTCTCTCTCCAGCTATTATGACTCTAGACCAGATCAGGGCTATTGATCGAAAGCAAGAAGTACCACATGATGGTGCTATGTGTGATCTTTTATGGTCTGATCCAGAAGATATTGTCGATGGTTGGGGATTGAGTCCCCGTGGTGCCGGATTCCTTTTCGGCGGCAGTGTTGTTACGTCTTTTAACCACTCAAACAACATTGATTACATATGTCGAGCTCATCAGCTAGTGATGGAAGGTTACAAATGGATGTTCAATAGCCAGATAGTCACTGTTTGGTCTGCCCCAAATTACTGTTATAGATGCGGTAATGTAGCTGCAATTCTAGAGCTCGATGAGAATCTAAACAAAGAGTTTCGTGTCTTCGATGCAGCCCCACAAGAATCGAGAGGAGCTCTAGCCAAGAAACCTGCACCTGATTATTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04922 map04922

Pfam Domains

Protein Families

Metallophos

Protein Analysis

305

Amino Acids

34.73

Weight (kDa)

5.16

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	45 - 101	1.3e-10	Calcineurin-like phosphoesterase
Metallophos	PF00149	132 - 280	9.6e-32	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55260 AT5G55260
fragaria_vesca	FvH4_3g23620
malus_domestica	MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica	Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis	pycom03g14490 pycom11g18400
rosa_chinensis	RchiOBHm_Chr5g0041641
rosa_laevigata	RLG00000034087
rosa_multiflora	Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii	Rroxscaffold_1G00038850
rosa_rugosa	Rorug05G0194400
rosa_samantha	Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana	Rw5G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	346, 904
AccB1I	GGYRCC	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	557
AciI	CCGC	2 cut(s)	648, 792
AclWI	GGATC	1 cut(s)	581
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	2 cut(s)	523, 557
AgsI	TTSAA	5 cut(s)	52, 104, 119, 190, 742
Alw21I	GWGCWC	3 cut(s)	706, 819, 883
Alw26I	GTCTC	2 cut(s)	260, 494
AlwI	GGATC	1 cut(s)	581
ApeKI	GCWGC	4 cut(s)	28, 39, 803, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AsuHPI	GGTGA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	629
BanII	GRGCYC	3 cut(s)	706, 819, 883
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	841
Bbv12I	GWGCWC	3 cut(s)	706, 819, 883
BbvI	GCAGC	4 cut(s)	26, 40, 790, 869
BccI	CCATC	3 cut(s)	551, 599, 712
BcoDI	GTCTC	2 cut(s)	260, 494
BfaI	CTAG	7 cut(s)	11, 98, 284, 512, 713, 812, 884
BfuAI	ACCTGC	2 cut(s)	346, 904
BisI	GCNGC	5 cut(s)	29, 40, 649, 804, 858
BlsI	GCNGC	5 cut(s)	30, 41, 650, 805, 859
BmiI	GGNNCC	2 cut(s)	332, 631
BmsI	GCATC	3 cut(s)	118, 779, 844
BpiI	GAAGAC	1 cut(s)	841
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	275, 460
BsaBI	GATNNNNATC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	247, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	523, 557
Bse118I	RCCGGY	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	825
BseDI	CCNNGG	2 cut(s)	247, 625
BseGI	GGATG	1 cut(s)	741
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	2 cut(s)	523, 557
BseMI	GCAATG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	891
BseXI	GCAGC	4 cut(s)	26, 40, 790, 869
BsgI	GTGCAG	2 cut(s)	403, 882
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	3 cut(s)	706, 819, 883
BsiSI	CCGG	2 cut(s)	343, 633
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	523, 557
BsmAI	GTCTC	2 cut(s)	260, 494
BsmFI	GGGAC	1 cut(s)	606
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	3 cut(s)	706, 819, 883
Bsp143I	GATC	4 cut(s)	519, 532, 571, 586
BspACI	CCGC	2 cut(s)	648, 792
BspLI	GGNNCC	2 cut(s)	332, 631
BspMI	ACCTGC	2 cut(s)	346, 904
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	247, 625
BssMI	GATC	4 cut(s)	519, 532, 571, 586
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	165, 311, 760, 782
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	1 cut(s)	741
BstKTI	GATC	4 cut(s)	522, 535, 574, 589
BstMAI	GTCTC	2 cut(s)	260, 494
BstMBI	GATC	4 cut(s)	519, 532, 571, 586
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 352
BstV1I	GCAGC	4 cut(s)	26, 40, 790, 869
BstV2I	GAAGAC	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	741
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	2 cut(s)	658, 756
BveI	ACCTGC	2 cut(s)	346, 904
Cac8I	GCNNGC	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	4 cut(s)	158, 175, 482, 554
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	4 cut(s)	521, 534, 573, 588
DpnII	GATC	4 cut(s)	519, 532, 571, 586
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	3 cut(s)	704, 817, 881
Eco24I	GRGCYC	3 cut(s)	706, 819, 883
Eco31I	GGTCTC	1 cut(s)	494
Eco32I	GATATC	2 cut(s)	302, 427
Eco53kI	GAGCTC	3 cut(s)	704, 817, 881
EcoICRI	GAGCTC	3 cut(s)	704, 817, 881
EcoRV	GATATC	2 cut(s)	302, 427
EcoT38I	GRGCYC	3 cut(s)	706, 819, 883
FaeI	CATG	4 cut(s)	161, 178, 485, 557
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	4 cut(s)	157, 174, 481, 553
FauNDI	CATATG	1 cut(s)	695
Fnu4HI	GCNGC	5 cut(s)	29, 40, 649, 804, 858
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	3 cut(s)	706, 819, 883
Fsp4HI	GCNGC	5 cut(s)	29, 40, 649, 804, 858
FspBI	CTAG	7 cut(s)	11, 98, 284, 512, 713, 812, 884
GluI	GCNGC	5 cut(s)	29, 40, 649, 804, 858
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	2 cut(s)	343, 633
Hin1II	CATG	4 cut(s)	161, 178, 485, 557
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	9 cut(s)	56, 94, 123, 442, 508, 619, 636, 826, 869
HpaII	CCGG	2 cut(s)	343, 633
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	7, 61, 586
Hpy188III	TCNNGA	6 cut(s)	305, 460, 512, 590, 812, 873
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	46, 61, 716
HpyCH4III	ACNGT	4 cut(s)	165, 311, 760, 782
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	4 cut(s)	420, 806, 857, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 352
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	4 cut(s)	161, 178, 485, 557
KroI	GCCGGC	1 cut(s)	342
KroNI	GCCGGC	1 cut(s)	344
Kzo9I	GATC	4 cut(s)	519, 532, 571, 586
LmnI	GCTCC	2 cut(s)	136, 878
Lsp1109I	GCAGC	4 cut(s)	26, 40, 790, 869
LweI	GCATC	3 cut(s)	118, 779, 844
MaeI	CTAG	7 cut(s)	11, 98, 284, 512, 713, 812, 884
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	4 cut(s)	136, 658, 725, 754
MalI	GATC	4 cut(s)	521, 534, 573, 588
MboI	GATC	4 cut(s)	519, 532, 571, 586
MboII	GAAGA	4 cut(s)	116, 272, 605, 841
MhlI	GDGCHC	3 cut(s)	706, 819, 883
MluCI	AATT	3 cut(s)	217, 775, 807
MlyI	GAGTC	4 cut(s)	132, 451, 502, 628
MnlI	CCTC	5 cut(s)	37, 242, 320, 479, 869
MroNI	GCCGGC	1 cut(s)	342
MseI	TTAA	3 cut(s)	33, 81, 669
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	2 cut(s)	343, 633
MwoI	GCNNNNNNNGC	2 cut(s)	25, 352
NaeI	GCCGGC	1 cut(s)	344
NdeI	CATATG	1 cut(s)	695
NdeII	GATC	4 cut(s)	519, 532, 571, 586
NgoMIV	GCCGGC	1 cut(s)	342
NlaIII	CATG	4 cut(s)	161, 178, 485, 557
NlaIV	GGNNCC	2 cut(s)	332, 631
NmuCI	GTSAC	2 cut(s)	136, 754
PdiI	GCCGGC	1 cut(s)	344
PfeI	GAWTC	5 cut(s)	56, 94, 636, 826, 869
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	30, 41, 650, 805, 859
PleI	GAGTC	4 cut(s)	131, 450, 502, 627
PpsI	GAGTC	4 cut(s)	131, 450, 502, 627
Psp124BI	GAGCTC	3 cut(s)	706, 819, 883
PspN4I	GGNNCC	2 cut(s)	332, 631
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	3 cut(s)	706, 819, 883
SaqAI	TTAA	3 cut(s)	33, 81, 669
SatI	GCNGC	5 cut(s)	29, 40, 649, 804, 858
Sau3AI	GATC	4 cut(s)	519, 532, 571, 586
SchI	GAGTC	4 cut(s)	132, 451, 502, 628
SduI	GDGCHC	3 cut(s)	706, 819, 883
SfaNI	GCATC	3 cut(s)	118, 779, 844
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	290, 439
SmoI	CTYRAG	2 cut(s)	290, 439
Sse9I	AATT	3 cut(s)	217, 775, 807
SsiI	CCGC	2 cut(s)	648, 792
SspMI	CTAG	7 cut(s)	11, 98, 284, 512, 713, 812, 884
SstI	GAGCTC	3 cut(s)	706, 819, 883
TaaI	ACNGT	4 cut(s)	165, 311, 760, 782
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	8 cut(s)	126, 459, 535, 603, 700, 819, 852, 872
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	217, 775, 807
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	5 cut(s)	56, 94, 636, 826, 869
Tru1I	TTAA	3 cut(s)	33, 81, 669
Tru9I	TTAA	3 cut(s)	33, 81, 669
TscAI	CASTG	2 cut(s)	658, 763
TseFI	GTSAC	2 cut(s)	136, 754
TseI	GCWGC	4 cut(s)	28, 39, 803, 857
Tsp45I	GTSAC	2 cut(s)	136, 754
TspDTI	ATGAA	3 cut(s)	146, 191, 470
TspRI	CASTG	2 cut(s)	658, 763
Van91I	CCANNNNNTGG	1 cut(s)	557
XbaI	TCTAGA	2 cut(s)	511, 811
XspI	CTAG	7 cut(s)	11, 98, 284, 512, 713, 812, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.